Wall clock time and date at job start Sat Apr 11 2020 06:55:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09001 * 109.47166 * 2 1
4 4 C 1.52992 * 109.47448 * 120.00767 * 2 1 3
5 5 C 1.52997 * 109.47482 * 184.99813 * 4 2 1
6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2
7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4
8 8 O 1.21280 * 120.00597 * 0.02562 * 7 6 5
9 9 C 1.50701 * 119.99622 * 179.97438 * 7 6 5
10 10 S 1.81002 * 109.47156 * 180.02562 * 9 7 6
11 11 C 1.76204 * 100.00151 * 180.02562 * 10 9 7
12 12 H 1.08000 * 119.99845 * 359.97438 * 11 10 9
13 13 C 1.38796 * 120.00054 * 180.02562 * 11 10 9
14 14 N 1.31627 * 120.00190 * 179.97438 * 13 11 10
15 15 Si 1.86796 * 119.99981 * 0.02562 * 13 11 10
16 16 H 1.48499 * 109.47522 * 90.00063 * 15 13 11
17 17 H 1.48504 * 109.47097 * 210.00185 * 15 13 11
18 18 H 1.48507 * 109.47328 * 329.99912 * 15 13 11
19 19 N 1.46502 * 109.46969 * 240.00729 * 2 1 3
20 20 C 1.34773 * 120.00306 * 84.99801 * 19 2 1
21 21 O 1.21292 * 119.99815 * 0.02562 * 20 19 2
22 22 C 1.50694 * 120.00409 * 179.97438 * 20 19 2
23 23 H 1.09004 * 110.28818 * 57.87787 * 22 20 19
24 24 C 1.54265 * 110.32886 * 180.02562 * 22 20 19
25 25 C 1.54371 * 105.06217 * 118.89686 * 24 22 20
26 26 N 1.48557 * 104.59493 * 23.85456 * 25 24 22
27 27 C 1.46902 * 111.00418 * 200.96090 * 26 25 24
28 28 C 1.48563 * 104.22414 * 320.51589 * 26 25 24
29 29 H 1.09004 * 109.47224 * 59.99257 * 1 2 3
30 30 H 1.09000 * 109.47346 * 179.97438 * 1 2 3
31 31 H 1.09007 * 109.46964 * 299.99762 * 1 2 3
32 32 H 1.09002 * 109.47103 * 64.99566 * 4 2 1
33 33 H 1.08998 * 109.46862 * 305.00378 * 4 2 1
34 34 H 1.09002 * 109.47153 * 59.99783 * 5 4 2
35 35 H 1.09001 * 109.46832 * 299.99974 * 5 4 2
36 36 H 0.96996 * 119.99606 * 0.02562 * 6 5 4
37 37 H 1.09001 * 109.47380 * 300.00190 * 9 7 6
38 38 H 1.09002 * 109.47060 * 60.00278 * 9 7 6
39 39 H 0.96997 * 120.00635 * 179.97438 * 14 13 11
40 40 H 0.97003 * 120.00235 * 265.00555 * 19 2 1
41 41 H 1.08997 * 110.32314 * 237.79710 * 24 22 20
42 42 H 1.08996 * 110.32080 * 359.97438 * 24 22 20
43 43 H 1.09001 * 110.41623 * 142.63318 * 25 24 22
44 44 H 1.09005 * 110.41141 * 264.95683 * 25 24 22
45 45 H 1.08995 * 109.47044 * 59.86902 * 27 26 25
46 46 H 1.08993 * 109.47567 * 179.87901 * 27 26 25
47 47 H 1.09010 * 109.46799 * 299.87685 * 27 26 25
48 48 H 1.08989 * 110.41085 * 280.70411 * 28 26 25
49 49 H 1.09004 * 110.41349 * 158.25963 * 28 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7214 1.2491
5 6 3.5648 -0.6135 1.3135
6 7 4.0531 -1.3037 2.5099
7 6 5.3740 -1.3399 2.7750
8 8 6.1584 -0.8006 2.0235
9 6 5.8763 -2.0494 4.0060
10 16 7.6802 -1.9219 4.0822
11 6 7.9872 -2.8108 5.5723
12 1 7.1634 -3.2330 6.1287
13 6 9.2876 -2.9675 6.0315
14 7 9.5169 -3.6311 7.1449
15 14 10.7121 -2.2354 5.0703
16 1 10.9740 -0.8541 5.5483
17 1 11.9254 -3.0676 5.2726
18 1 10.3697 -2.2027 3.6256
19 7 2.0183 -0.6905 -1.1963
20 6 2.1470 -0.0181 -2.3572
21 8 1.8589 1.1589 -2.4114
22 6 2.6498 -0.7281 -3.5876
23 1 2.0076 -1.5768 -3.8232
24 6 2.7100 0.2465 -4.7818
25 6 4.1972 0.2845 -5.1940
26 7 4.7554 -1.0005 -4.7002
27 6 6.2158 -0.9218 -4.5622
28 6 4.1057 -1.1970 -3.3787
29 1 -0.3634 0.5140 -0.8899
30 1 -0.3634 -1.0276 -0.0005
31 1 -0.3633 0.5138 0.8901
32 1 1.7516 -1.7716 1.2053
33 1 1.6054 -0.2620 2.1368
34 1 3.8532 0.4368 1.3572
35 1 3.9994 -1.0729 0.4257
36 1 3.4258 -1.7353 3.1108
37 1 5.4421 -1.5889 4.8935
38 1 5.5874 -3.0996 3.9633
39 1 10.4257 -3.7409 7.4657
40 1 2.2489 -1.6317 -1.1529
41 1 2.0985 -0.1244 -5.6043
42 1 2.3754 1.2384 -4.4781
43 1 4.2897 0.3476 -6.2782
44 1 4.7014 1.1271 -4.7206
45 1 6.4719 -0.1327 -3.8552
46 1 6.5983 -1.8749 -4.1972
47 1 6.6609 -0.6991 -5.5321
48 1 4.5961 -0.5877 -2.6197
49 1 4.1293 -2.2495 -3.0962
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001075677915.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:55:45
Heat of formation + Delta-G solvation = -110.252485 kcal
Electronic energy + Delta-G solvation = -27463.943160 eV
Core-core repulsion = 23550.382382 eV
Total energy + Delta-G solvation = -3913.560778 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.172 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-41.44417 -40.65176 -39.27016 -37.64468 -35.62910 -34.67533 -33.58509 -32.61035
-31.40650 -29.86945 -29.21718 -27.84666 -26.89826 -24.68719 -23.55422 -22.28426
-22.06571 -21.54391 -20.86775 -19.88615 -18.53099 -17.86952 -17.45030 -17.28257
-17.06840 -16.99827 -16.66859 -16.14888 -15.85665 -15.68358 -15.23828 -15.20482
-14.98354 -14.85102 -14.71854 -14.44511 -14.17724 -13.79325 -13.64492 -13.55488
-13.35139 -13.06622 -13.02695 -12.72749 -12.66881 -12.50859 -12.47267 -12.37696
-12.27956 -12.18631 -11.94943 -11.86089 -11.73727 -11.17873 -11.03572 -10.89277
-10.53509 -10.23004 -10.08198 -9.62275 -9.00154 -8.52025 -6.22684 0.98833
1.30621 1.46094 1.55072 1.55526 1.56464 2.13761 2.20910 2.25453
2.71571 2.86282 3.01010 3.48497 3.57402 3.69326 3.76386 3.86096
3.99093 4.05302 4.16956 4.24258 4.26104 4.37201 4.41621 4.45498
4.46118 4.47674 4.50957 4.59500 4.63469 4.79185 4.82431 4.88084
4.91294 4.95982 5.01794 5.08896 5.10337 5.13436 5.31413 5.39360
5.52967 5.70464 5.71613 5.88052 6.11314 6.46958 6.51106 6.93418
7.19749 7.21320 8.60232
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.012292 B = 0.002244 C = 0.001945
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2277.346292 B =12473.022495 C =14394.158008
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C 0.144 3.856
3 H 0.065 0.935
4 C -0.123 4.123
5 C 0.121 3.879
6 N -0.709 5.709
7 C 0.533 3.467
8 O -0.566 6.566
9 C -0.111 4.111
10 S -0.181 6.181
11 C -0.527 4.527
12 H 0.064 0.936
13 C 0.045 3.955
14 N -0.916 5.916
15 Si 0.913 3.087
16 H -0.264 1.264
17 H -0.259 1.259
18 H -0.237 1.237
19 N -0.713 5.713
20 C 0.519 3.481
21 O -0.578 6.578
22 C -0.108 4.108
23 H 0.133 0.867
24 C -0.115 4.115
25 C 0.029 3.971
26 N -0.518 5.518
27 C 0.010 3.990
28 C 0.042 3.958
29 H 0.041 0.959
30 H 0.076 0.924
31 H 0.079 0.921
32 H 0.105 0.895
33 H 0.106 0.894
34 H 0.045 0.955
35 H 0.059 0.941
36 H 0.420 0.580
37 H 0.114 0.886
38 H 0.117 0.883
39 H 0.277 0.723
40 H 0.414 0.586
41 H 0.093 0.907
42 H 0.074 0.926
43 H 0.096 0.904
44 H 0.032 0.968
45 H 0.019 0.981
46 H 0.076 0.924
47 H 0.081 0.919
48 H 0.031 0.969
49 H 0.106 0.894
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.543 3.347 -22.088 31.035
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C 0.039 3.961
3 H 0.083 0.917
4 C -0.161 4.161
5 C -0.003 4.003
6 N -0.363 5.363
7 C 0.318 3.682
8 O -0.445 6.445
9 C -0.261 4.261
10 S 0.046 5.954
11 C -0.675 4.675
12 H 0.082 0.918
13 C -0.160 4.160
14 N -0.554 5.554
15 Si 0.735 3.265
16 H -0.189 1.189
17 H -0.184 1.184
18 H -0.161 1.161
19 N -0.365 5.365
20 C 0.306 3.694
21 O -0.458 6.458
22 C -0.130 4.130
23 H 0.151 0.849
24 C -0.154 4.154
25 C -0.099 4.099
26 N -0.241 5.241
27 C -0.139 4.139
28 C -0.086 4.086
29 H 0.060 0.940
30 H 0.095 0.905
31 H 0.098 0.902
32 H 0.123 0.877
33 H 0.124 0.876
34 H 0.064 0.936
35 H 0.077 0.923
36 H 0.257 0.743
37 H 0.132 0.868
38 H 0.135 0.865
39 H 0.086 0.914
40 H 0.251 0.749
41 H 0.112 0.888
42 H 0.093 0.907
43 H 0.115 0.885
44 H 0.050 0.950
45 H 0.038 0.962
46 H 0.095 0.905
47 H 0.100 0.900
48 H 0.049 0.951
49 H 0.125 0.875
Dipole moment (debyes) X Y Z Total
from point charges -20.444 4.553 -23.583 31.541
hybrid contribution 0.236 -0.216 1.980 2.006
sum -20.208 4.337 -21.603 29.897
Atomic orbital electron populations
1.22088 0.93490 1.03275 1.02423 1.20883 0.95058 0.96585 0.83537
0.91656 1.22048 0.91909 1.03807 0.98373 1.21372 0.95463 0.96368
0.87078 1.45687 1.05996 1.57087 1.27561 1.19998 0.83120 0.79309
0.85751 1.90700 1.56615 1.46712 1.50442 1.23274 0.98004 1.05120
0.99750 1.84766 1.04486 1.73388 1.32768 1.22452 0.96787 1.39404
1.08810 0.91776 1.25551 1.00818 0.94342 0.95308 1.70008 1.22727
1.40774 1.21917 0.85881 0.79612 0.79390 0.81569 1.18881 1.18353
1.16088 1.46080 1.66632 1.14720 1.09111 1.20815 0.76346 0.86768
0.85465 1.90673 1.51931 1.17814 1.85394 1.22089 0.97888 1.00322
0.92693 0.84895 1.22309 0.96253 0.99957 0.96832 1.23201 0.94780
0.90214 1.01702 1.65458 1.05805 1.31258 1.21624 1.22566 0.87824
1.01521 1.01960 1.23118 0.91993 1.02533 0.90978 0.93963 0.90537
0.90229 0.87651 0.87578 0.93645 0.92254 0.74266 0.86809 0.86497
0.91378 0.74874 0.88824 0.90732 0.88545 0.94969 0.96206 0.90537
0.89998 0.95056 0.87537
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.52 9.48 71.98 0.68 -0.84 16
2 C 0.14 1.74 2.57 44.99 0.12 1.86 16
3 H 0.07 1.18 7.58 -2.39 -0.02 1.16 16
4 C -0.12 -1.05 4.87 30.59 0.15 -0.90 16
5 C 0.12 2.13 5.56 86.38 0.48 2.61 16
6 N -0.71 -14.23 5.56 -463.06 -2.57 -16.80 16
7 C 0.53 17.23 7.85 87.66 0.69 17.91 16
8 O -0.57 -23.66 15.86 -3.03 -0.05 -23.71 16
9 C -0.11 -3.94 6.16 71.24 0.44 -3.51 16
10 S -0.18 -8.97 18.55 -56.49 -1.05 -10.02 16
11 C -0.53 -30.21 10.04 67.95 0.68 -29.52 16
12 H 0.06 3.86 8.03 -2.91 -0.02 3.83 16
13 C 0.05 2.63 5.50 84.86 0.47 3.10 16
14 N -0.92 -55.28 13.97 21.65 0.30 -54.98 16
15 Si 0.91 44.74 27.74 68.60 1.90 46.64 16
16 H -0.26 -12.68 7.11 99.48 0.71 -11.98 16
17 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16
18 H -0.24 -11.58 6.74 99.48 0.67 -10.91 16
19 N -0.71 -8.54 4.50 -442.55 -1.99 -10.53 16
20 C 0.52 9.10 6.97 87.66 0.61 9.71 16
21 O -0.58 -15.06 14.92 -3.07 -0.05 -15.10 16
22 C -0.11 -1.45 3.45 -10.64 -0.04 -1.49 16
23 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16
24 C -0.12 -1.74 6.59 31.49 0.21 -1.53 16
25 C 0.03 0.46 6.49 86.45 0.56 1.02 16
26 N -0.52 -8.57 5.66 -907.65 -5.14 -13.70 16
27 C 0.01 0.16 9.53 127.69 1.22 1.38 16
28 C 0.04 0.64 6.01 86.45 0.52 1.16 16
29 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16
30 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16
31 H 0.08 0.61 8.14 -2.38 -0.02 0.60 16
32 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16
33 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16
34 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16
35 H 0.06 1.16 7.75 -2.39 -0.02 1.14 16
36 H 0.42 5.27 8.47 -92.71 -0.79 4.48 16
37 H 0.11 3.70 8.14 -2.40 -0.02 3.68 16
38 H 0.12 3.74 8.14 -2.39 -0.02 3.72 16
39 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16
40 H 0.41 2.85 8.60 -92.71 -0.80 2.05 16
41 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16
42 H 0.07 1.46 6.46 -2.39 -0.02 1.45 16
43 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16
44 H 0.03 0.60 7.97 -2.38 -0.02 0.58 16
45 H 0.02 0.36 7.98 -2.39 -0.02 0.35 16
46 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16
47 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16
48 H 0.03 0.61 7.62 -2.39 -0.02 0.59 16
49 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16
Total: -1.00 -80.48 411.52 -2.53 -83.01
By element:
Atomic # 1 Polarization: 14.90 SS G_CDS: -0.67 Total: 14.23 kcal
Atomic # 6 Polarization: -5.82 SS G_CDS: 6.78 Total: 0.96 kcal
Atomic # 7 Polarization: -86.62 SS G_CDS: -9.40 Total: -96.02 kcal
Atomic # 8 Polarization: -38.72 SS G_CDS: -0.09 Total: -38.81 kcal
Atomic # 14 Polarization: 44.74 SS G_CDS: 1.90 Total: 46.64 kcal
Atomic # 16 Polarization: -8.97 SS G_CDS: -1.05 Total: -10.02 kcal
Total: -80.48 -2.53 -83.01 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001075677915.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -27.239 kcal
(2) G-P(sol) polarization free energy of solvation -80.483 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.722 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.530 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.014 kcal
(6) G-S(sol) free energy of system = (1) + (5) -110.252 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds