Wall clock time and date at job start Sat Apr 11 2020 06:55:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08994 * 109.47081 * 2 1
4 4 N 1.46898 * 109.47140 * 239.99594 * 2 1 3
5 5 C 1.46906 * 110.99888 * 84.99977 * 4 2 1
6 6 C 1.52999 * 109.46897 * 179.97438 * 5 4 2
7 7 C 1.53003 * 110.30387 * 57.82970 * 6 5 4
8 8 C 1.54385 * 110.34641 * 295.53499 * 6 5 4
9 9 N 1.48150 * 104.62060 * 217.26340 * 8 6 5
10 10 C 1.34775 * 127.83793 * 219.60552 * 9 8 6
11 11 O 1.21281 * 120.00334 * 359.95501 * 10 9 8
12 12 C 1.50695 * 119.99760 * 179.97438 * 10 9 8
13 13 S 1.80997 * 109.47319 * 180.02562 * 12 10 9
14 14 C 1.76194 * 100.00336 * 180.02562 * 13 12 10
15 15 H 1.08000 * 120.00284 * 359.97438 * 14 13 12
16 16 C 1.38804 * 120.00277 * 180.02562 * 14 13 12
17 17 N 1.31630 * 119.99747 * 359.97438 * 16 14 13
18 18 Si 1.86793 * 120.00079 * 179.97438 * 16 14 13
19 19 H 1.48498 * 109.47412 * 359.97438 * 18 16 14
20 20 H 1.48502 * 109.47220 * 119.99783 * 18 16 14
21 21 H 1.48501 * 109.46832 * 239.99373 * 18 16 14
22 22 C 1.48144 * 104.32127 * 39.58934 * 9 8 6
23 23 C 1.54293 * 110.34171 * 179.97438 * 6 5 4
24 24 H 1.09004 * 110.33722 * 0.02562 * 23 6 5
25 25 C 1.52998 * 110.34394 * 237.74429 * 23 6 5
26 26 C 1.50700 * 109.47410 * 120.00071 * 2 1 3
27 27 N 1.34783 * 119.99522 * 300.00316 * 26 2 1
28 28 O 1.21276 * 120.00506 * 119.99873 * 26 2 1
29 29 H 1.08997 * 109.47119 * 299.99707 * 1 2 3
30 30 H 1.08994 * 109.46950 * 60.00641 * 1 2 3
31 31 H 1.09006 * 109.46704 * 180.02562 * 1 2 3
32 32 H 1.00902 * 111.00533 * 321.04383 * 4 2 1
33 33 H 1.09000 * 109.47033 * 300.00113 * 5 4 2
34 34 H 1.09001 * 109.46544 * 60.00058 * 5 4 2
35 35 H 1.09000 * 109.47304 * 60.70146 * 7 6 5
36 36 H 1.09003 * 109.46637 * 180.69688 * 7 6 5
37 37 H 1.08999 * 109.46994 * 300.69289 * 7 6 5
38 38 H 1.09001 * 110.40675 * 336.05121 * 8 6 5
39 39 H 1.09006 * 110.40702 * 98.48057 * 8 6 5
40 40 H 1.09000 * 109.47441 * 300.00491 * 12 10 9
41 41 H 1.09009 * 109.46773 * 60.00590 * 12 10 9
42 42 H 0.96999 * 120.00349 * 180.02562 * 17 16 14
43 43 H 1.08993 * 110.40769 * 201.62991 * 22 9 8
44 44 H 1.08997 * 110.40885 * 79.19469 * 22 9 8
45 45 H 1.08996 * 109.47040 * 60.00069 * 25 23 6
46 46 H 1.09005 * 109.46967 * 179.97438 * 25 23 6
47 47 H 1.08999 * 109.47278 * 299.99796 * 25 23 6
48 48 H 0.96995 * 120.00206 * 359.97438 * 27 26 2
49 49 H 0.97003 * 119.99612 * 179.97438 * 27 26 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 7 2.0197 -0.6926 -1.1994
5 6 2.0824 0.2225 -2.3469
6 6 2.5962 -0.5331 -3.5741
7 6 1.6899 -1.7272 -3.8802
8 6 4.0488 -1.0034 -3.3456
9 7 4.7051 -0.8447 -4.6643
10 6 5.5949 -1.6705 -5.2497
11 8 5.9454 -2.6841 -4.6833
12 6 6.1547 -1.3343 -6.6078
13 16 7.3132 -2.6272 -7.1199
14 6 7.8006 -1.9965 -8.6912
15 1 7.3874 -1.0660 -9.0515
16 6 8.7148 -2.6961 -9.4667
17 7 9.2181 -3.8305 -9.0280
18 14 9.2309 -2.0278 -11.1329
19 1 8.5258 -0.7470 -11.3926
20 1 10.6978 -1.7963 -11.1406
21 1 8.8792 -3.0093 -12.1904
22 6 4.1610 0.4275 -5.1937
23 6 2.6696 0.4102 -4.7929
24 1 2.3399 1.4120 -4.5170
25 6 1.8164 -0.1352 -5.9398
26 6 2.0324 -0.7104 1.2304
27 7 1.7067 -0.2499 2.4546
28 8 2.7296 -1.6964 1.1192
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5137 -0.8900
31 1 -0.3633 -1.0277 0.0005
32 1 1.4496 -1.4981 -1.4100
33 1 1.0870 0.6162 -2.5525
34 1 2.7589 1.0461 -2.1182
35 1 0.6807 -1.3730 -4.0900
36 1 2.0750 -2.2623 -4.7483
37 1 1.6687 -2.3970 -3.0206
38 1 4.5382 -0.3772 -2.5997
39 1 4.0657 -2.0485 -3.0360
40 1 5.3410 -1.2691 -7.3302
41 1 6.6753 -0.3778 -6.5595
42 1 9.8573 -4.3193 -9.5696
43 1 4.2624 0.4621 -6.2783
44 1 4.6678 1.2772 -4.7363
45 1 0.7792 -0.2158 -5.6145
46 1 1.8780 0.5415 -6.7921
47 1 2.1838 -1.1196 -6.2296
48 1 1.1493 0.5389 2.5436
49 1 2.0298 -0.7074 3.2466
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001180662050.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:55:30
Heat of formation + Delta-G solvation = -71.912390 kcal
Electronic energy + Delta-G solvation = -28251.684929 eV
Core-core repulsion = 24339.786702 eV
Total energy + Delta-G solvation = -3911.898227 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.172 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-40.51860 -39.80648 -38.03987 -36.30988 -34.11408 -33.34166 -32.38862 -31.69903
-29.82067 -29.14112 -27.26356 -25.75059 -25.63356 -25.26043 -24.17932 -21.81387
-20.62852 -19.28539 -18.88786 -17.97880 -17.52215 -17.13364 -16.46037 -16.21834
-15.66974 -15.31202 -15.03508 -14.77431 -14.70341 -14.50546 -14.20280 -14.10446
-13.91578 -13.74758 -13.29644 -13.11943 -12.88343 -12.73080 -12.60082 -12.49531
-12.19026 -12.06904 -11.81021 -11.73697 -11.60764 -11.44162 -11.04368 -10.97233
-10.78872 -10.71619 -10.63675 -10.60933 -10.10931 -9.99571 -9.75703 -9.26922
-9.03622 -8.74644 -8.40769 -8.16445 -6.44813 -6.17579 -3.87549 2.38608
2.99923 3.01871 3.18788 3.24060 3.29532 3.34174 3.69952 3.79012
4.23973 4.33719 4.35079 4.41520 4.47113 4.53537 4.61561 4.91052
4.96661 4.99187 5.10493 5.10758 5.12531 5.17339 5.24785 5.30416
5.44608 5.47011 5.48582 5.59954 5.64561 5.66721 5.72801 5.87678
5.92958 5.94995 6.01472 6.03994 6.14773 6.19925 6.29961 6.38443
6.50739 6.59097 6.93514 7.05175 7.63642 7.87892 8.00830 8.39428
8.70091 9.27528 10.89904
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.022398 B = 0.002144 C = 0.002022
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1249.818348 B =13054.997972 C =13843.517618
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C 0.067 3.933
3 H 0.104 0.896
4 N -0.666 5.666
5 C 0.077 3.923
6 C -0.068 4.068
7 C -0.142 4.142
8 C 0.128 3.872
9 N -0.630 5.630
10 C 0.553 3.447
11 O -0.515 6.515
12 C -0.145 4.145
13 S -0.061 6.061
14 C -0.533 4.533
15 H 0.072 0.928
16 C 0.072 3.928
17 N -0.867 5.867
18 Si 0.919 3.081
19 H -0.272 1.272
20 H -0.280 1.280
21 H -0.280 1.280
22 C 0.104 3.896
23 C -0.096 4.096
24 H 0.083 0.917
25 C -0.145 4.145
26 C 0.517 3.483
27 N -0.862 5.862
28 O -0.515 6.515
29 H 0.066 0.934
30 H 0.068 0.932
31 H 0.064 0.936
32 H 0.351 0.649
33 H 0.036 0.964
34 H 0.076 0.924
35 H 0.056 0.944
36 H 0.066 0.934
37 H 0.058 0.942
38 H 0.070 0.930
39 H 0.085 0.915
40 H 0.087 0.913
41 H 0.087 0.913
42 H 0.267 0.733
43 H 0.082 0.918
44 H 0.069 0.931
45 H 0.057 0.943
46 H 0.055 0.945
47 H 0.063 0.937
48 H 0.398 0.602
49 H 0.401 0.599
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.721 15.349 18.273 33.647
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.240 4.240
2 C -0.047 4.047
3 H 0.122 0.878
4 N -0.299 5.299
5 C -0.052 4.052
6 C -0.070 4.070
7 C -0.199 4.199
8 C 0.006 3.994
9 N -0.367 5.367
10 C 0.341 3.659
11 O -0.389 6.389
12 C -0.296 4.296
13 S 0.166 5.834
14 C -0.682 4.682
15 H 0.091 0.909
16 C -0.137 4.137
17 N -0.503 5.503
18 Si 0.745 3.255
19 H -0.196 1.196
20 H -0.206 1.206
21 H -0.206 1.206
22 C -0.019 4.019
23 C -0.116 4.116
24 H 0.102 0.898
25 C -0.202 4.202
26 C 0.300 3.700
27 N -0.427 5.427
28 O -0.388 6.388
29 H 0.085 0.915
30 H 0.087 0.913
31 H 0.083 0.917
32 H 0.172 0.828
33 H 0.054 0.946
34 H 0.095 0.905
35 H 0.075 0.925
36 H 0.085 0.915
37 H 0.077 0.923
38 H 0.088 0.912
39 H 0.103 0.897
40 H 0.105 0.895
41 H 0.105 0.895
42 H 0.077 0.923
43 H 0.100 0.900
44 H 0.087 0.913
45 H 0.076 0.924
46 H 0.074 0.926
47 H 0.082 0.918
48 H 0.226 0.774
49 H 0.232 0.768
Dipole moment (debyes) X Y Z Total
from point charges -21.854 13.023 18.885 31.683
hybrid contribution -1.199 2.089 -1.481 2.828
sum -23.053 15.112 17.404 32.599
Atomic orbital electron populations
1.22471 0.95060 1.03219 1.03208 1.21441 0.93898 0.98800 0.90521
0.87784 1.60113 1.58021 1.09358 1.02363 1.22075 0.99350 0.94738
0.89048 1.21520 0.96196 0.95735 0.93540 1.21974 0.98478 0.97132
1.02359 1.22190 0.89557 1.02919 0.84777 1.49002 1.44359 1.23275
1.20026 1.19934 0.77240 0.82047 0.86643 1.90719 1.58117 1.25264
1.64819 1.23493 1.04085 1.06569 0.95460 1.85430 1.49914 1.26391
1.21682 1.22901 1.30450 1.11062 1.03752 0.90941 1.24998 0.95297
0.94718 0.98658 1.70033 1.28626 1.14032 1.37561 0.86120 0.78405
0.78833 0.82147 1.19641 1.20584 1.20599 1.22425 0.92465 0.86829
1.00228 1.22149 0.95402 0.98998 0.95039 0.89845 1.21935 0.99246
1.01823 0.97241 1.20612 0.79949 0.84673 0.84769 1.43918 1.56607
1.34020 1.08191 1.90797 1.36006 1.25543 1.86424 0.91490 0.91282
0.91670 0.82757 0.94616 0.90532 0.92548 0.91485 0.92293 0.91224
0.89695 0.89480 0.89465 0.92267 0.89999 0.91313 0.92379 0.92606
0.91806 0.77443 0.76843
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -0.64 9.06 37.16 0.34 -0.30 16
2 C 0.07 0.40 3.00 -68.87 -0.21 0.19 16
3 H 0.10 0.47 7.80 -51.93 -0.40 0.06 16
4 N -0.67 -5.42 5.45 -107.95 -0.59 -6.00 16
5 C 0.08 0.53 4.16 -3.82 -0.02 0.52 16
6 C -0.07 -0.62 0.82 -153.11 -0.13 -0.75 16
7 C -0.14 -1.31 6.89 37.16 0.26 -1.06 16
8 C 0.13 1.71 5.90 -2.41 -0.01 1.70 16
9 N -0.63 -9.64 3.32 -169.28 -0.56 -10.20 16
10 C 0.55 11.32 7.93 -10.99 -0.09 11.23 16
11 O -0.52 -12.75 16.13 5.56 0.09 -12.66 16
12 C -0.15 -3.11 5.13 36.00 0.18 -2.93 16
13 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16
14 C -0.53 -15.50 9.50 30.94 0.29 -15.20 16
15 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16
16 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16
17 N -0.87 -26.63 13.22 55.49 0.73 -25.90 16
18 Si 0.92 21.74 29.55 -169.99 -5.02 16.72 16
19 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16
20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16
21 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16
22 C 0.10 1.15 6.47 -2.38 -0.02 1.14 16
23 C -0.10 -0.81 3.31 -89.19 -0.30 -1.10 16
24 H 0.08 0.53 7.71 -51.93 -0.40 0.13 16
25 C -0.15 -1.23 7.92 37.16 0.29 -0.94 16
26 C 0.52 4.36 7.50 -10.98 -0.08 4.28 16
27 N -0.86 -3.70 8.77 31.22 0.27 -3.43 16
28 O -0.51 -7.24 17.27 5.56 0.10 -7.14 16
29 H 0.07 0.12 7.56 -51.93 -0.39 -0.28 16
30 H 0.07 0.21 7.45 -51.93 -0.39 -0.17 16
31 H 0.06 0.29 8.13 -51.93 -0.42 -0.13 16
32 H 0.35 2.92 6.50 -39.29 -0.26 2.67 16
33 H 0.04 0.19 7.44 -51.93 -0.39 -0.20 16
34 H 0.08 0.52 8.01 -51.93 -0.42 0.10 16
35 H 0.06 0.41 6.89 -51.93 -0.36 0.05 16
36 H 0.07 0.77 6.71 -51.93 -0.35 0.42 16
37 H 0.06 0.56 6.58 -51.93 -0.34 0.22 16
38 H 0.07 0.93 7.83 -51.93 -0.41 0.52 16
39 H 0.08 1.37 7.60 -51.93 -0.39 0.97 16
40 H 0.09 1.72 7.95 -51.92 -0.41 1.31 16
41 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16
42 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16
43 H 0.08 0.92 7.02 -51.93 -0.36 0.55 16
44 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
45 H 0.06 0.41 6.84 -51.93 -0.36 0.06 16
46 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16
47 H 0.06 0.68 6.76 -51.93 -0.35 0.33 16
48 H 0.40 0.41 8.25 -40.82 -0.34 0.07 16
49 H 0.40 1.61 8.93 -40.82 -0.36 1.24 16
LS Contribution 401.19 15.07 6.05 6.05
Total: -1.00 -38.76 401.19 -8.63 -47.39
By element:
Atomic # 1 Polarization: 8.24 SS G_CDS: -7.91 Total: 0.32 kcal
Atomic # 6 Polarization: -1.64 SS G_CDS: 0.43 Total: -1.21 kcal
Atomic # 7 Polarization: -45.39 SS G_CDS: -0.14 Total: -45.54 kcal
Atomic # 8 Polarization: -19.99 SS G_CDS: 0.19 Total: -19.80 kcal
Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal
Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal
Total LS contribution 6.05 Total: 6.05 kcal
Total: -38.76 -8.63 -47.39 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001180662050.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -24.524 kcal
(2) G-P(sol) polarization free energy of solvation -38.759 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.283 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.388 kcal
(6) G-S(sol) free energy of system = (1) + (5) -71.912 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds