Wall clock time and date at job start Sat Apr 11 2020 06:53:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52990 * 1
3 3 H 1.09008 * 109.29469 * 2 1
4 4 C 1.51658 * 109.38661 * 119.73851 * 2 1 3
5 5 N 1.46394 * 104.21605 * 220.95177 * 4 2 1
6 6 C 1.34777 * 117.29990 * 87.85808 * 5 4 2
7 7 O 1.21592 * 119.99804 * 174.20766 * 6 5 4
8 8 N 1.34773 * 120.00236 * 354.19544 * 6 5 4
9 9 C 1.46496 * 120.00105 * 184.91123 * 8 6 5
10 10 C 1.53045 * 109.46398 * 275.07400 * 9 8 6
11 11 C 1.53189 * 109.31410 * 178.61379 * 10 9 8
12 12 N 1.46922 * 108.77422 * 54.63629 * 11 10 9
13 13 C 1.36937 * 120.63034 * 126.41525 * 12 11 10
14 14 H 1.08001 * 119.99952 * 215.80502 * 13 12 11
15 15 C 1.38817 * 120.00196 * 35.79831 * 13 12 11
16 16 N 1.31614 * 119.99794 * 356.64968 * 15 13 12
17 17 Si 1.86803 * 120.00247 * 176.64746 * 15 13 12
18 18 H 1.48502 * 109.46766 * 60.00011 * 17 15 13
19 19 H 1.48496 * 109.47021 * 180.02562 * 17 15 13
20 20 H 1.48501 * 109.46888 * 300.00512 * 17 15 13
21 21 C 1.46926 * 118.74163 * 306.38935 * 12 11 10
22 22 C 1.53042 * 109.46207 * 155.00467 * 9 8 6
23 23 C 1.40464 * 125.39336 * 267.82981 * 5 4 2
24 24 C 1.55520 * 108.67781 * 61.99801 * 23 5 4
25 25 S 1.79598 * 109.61041 * 292.81138 * 24 23 5
26 26 O 1.42104 * 109.40280 * 206.65993 * 25 24 23
27 27 C 1.53317 * 109.38339 * 240.27051 * 2 1 3
28 28 H 1.09002 * 109.47274 * 300.25970 * 1 2 3
29 29 H 1.08997 * 109.47402 * 60.26279 * 1 2 3
30 30 H 1.09001 * 109.46983 * 180.26084 * 1 2 3
31 31 H 1.09001 * 110.47157 * 102.28495 * 4 2 1
32 32 H 1.08999 * 110.47203 * 339.62524 * 4 2 1
33 33 H 0.96994 * 119.99770 * 4.92286 * 8 6 5
34 34 H 1.09000 * 109.46023 * 35.03053 * 9 8 6
35 35 H 1.09000 * 109.49510 * 298.57191 * 10 9 8
36 36 H 1.09007 * 109.49517 * 58.65951 * 10 9 8
37 37 H 1.08995 * 109.58505 * 294.84523 * 11 10 9
38 38 H 1.09002 * 109.58290 * 174.42465 * 11 10 9
39 39 H 0.97001 * 120.00451 * 179.97438 * 16 15 13
40 40 H 1.09005 * 109.58056 * 293.82401 * 21 12 11
41 41 H 1.08992 * 109.58616 * 173.39821 * 21 12 11
42 42 H 1.08994 * 109.49918 * 301.33991 * 22 9 8
43 43 H 1.09003 * 109.49443 * 61.43478 * 22 9 8
44 44 H 1.09004 * 109.62854 * 181.79910 * 23 5 4
45 45 H 1.09000 * 109.63014 * 302.18723 * 23 5 4
46 46 H 1.09001 * 109.45563 * 52.66753 * 24 23 5
47 47 H 1.08995 * 109.45936 * 172.60254 * 24 23 5
48 48 H 1.08991 * 109.17617 * 320.15679 * 27 2 1
49 49 H 1.08995 * 109.17714 * 79.43828 * 27 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8901 1.0289 0.0000
4 6 2.0333 -0.7096 1.2422
5 7 3.1637 0.1062 1.6891
6 6 2.8945 1.1344 2.5179
7 8 3.8045 1.7786 3.0029
8 7 1.6166 1.4486 2.8090
9 6 1.3198 2.6304 3.6222
10 6 1.4157 2.2658 5.1056
11 6 1.1388 3.5119 5.9525
12 7 -0.1570 4.0771 5.5525
13 6 -1.1310 4.3174 6.4847
14 1 -2.1700 4.1676 6.2310
15 6 -0.7828 4.7534 7.7558
16 7 0.4856 4.8727 8.0861
17 14 -2.1145 5.1709 8.9974
18 1 -2.9525 3.9706 9.2469
19 1 -1.4856 5.6092 10.2692
20 1 -2.9641 6.2653 8.4629
21 6 -0.3879 4.3802 4.1335
22 6 -0.0939 3.1244 3.3070
23 6 4.5057 -0.0943 1.3259
24 6 4.6355 0.0755 -0.2145
25 16 3.7635 -1.2579 -1.0435
26 8 4.3493 -1.4843 -2.3183
27 6 2.0387 -0.7172 -1.2559
28 1 -0.3634 0.5179 0.8876
29 1 -0.3634 0.5097 -0.8923
30 1 -0.3633 -1.0277 0.0047
31 1 2.3648 -1.7186 0.9969
32 1 1.2569 -0.7369 2.0067
33 1 0.8934 0.8921 2.4801
34 1 2.0387 3.4175 3.3949
35 1 0.6800 1.4962 5.3392
36 1 2.4160 1.8919 5.3244
37 1 1.9253 4.2481 5.7872
38 1 1.1080 3.2375 7.0070
39 1 0.7290 5.1777 8.9741
40 1 0.2742 5.1874 3.8200
41 1 -1.4260 4.6788 3.9879
42 1 -0.1681 3.3618 2.2458
43 1 -0.8154 2.3468 3.5576
44 1 5.1349 0.6397 1.8295
45 1 4.8159 -1.0996 1.6110
46 1 4.2011 1.0298 -0.5124
47 1 5.6885 0.0531 -0.4949
48 1 1.4120 -1.5875 -1.4499
49 1 1.9796 -0.0369 -2.1054
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001668523419.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:53:59
Heat of formation + Delta-G solvation = -28.304963 kcal
Electronic energy + Delta-G solvation = -29555.259489 eV
Core-core repulsion = 25645.252222 eV
Total energy + Delta-G solvation = -3910.007267 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.172 amu
Computer time = 2.42 seconds
Orbital eigenvalues (eV)
-40.98684 -38.05387 -37.06471 -35.94341 -35.09009 -34.15806 -32.35334 -30.94353
-29.90031 -29.17569 -27.84298 -26.83701 -25.19747 -23.65040 -22.18325 -21.70791
-21.21932 -19.87381 -19.45120 -18.28620 -17.67324 -16.91923 -16.65345 -16.44330
-15.67267 -15.28981 -14.85349 -14.75033 -14.69520 -14.37205 -14.13169 -13.84413
-13.55250 -13.41310 -13.22432 -13.06373 -12.96814 -12.69408 -12.62018 -12.38353
-12.32644 -11.89426 -11.74515 -11.53306 -11.39039 -11.27797 -10.96878 -10.89163
-10.80244 -10.40490 -10.33979 -10.21485 -10.10641 -9.94556 -9.80165 -9.59107
-8.96591 -8.58288 -8.47469 -8.38779 -6.55695 -5.78308 -3.32471 1.03641
2.28683 2.66103 3.20557 3.37057 3.38396 3.42927 3.43309 3.83263
4.16559 4.28960 4.47237 4.55835 4.63634 4.69733 4.88568 4.91000
5.08044 5.13826 5.23359 5.29409 5.33373 5.40179 5.47524 5.57777
5.61115 5.65542 5.68310 5.72153 5.81953 5.86337 6.10603 6.23722
6.35831 6.46409 6.51094 6.64122 6.67495 6.76359 6.87112 6.95424
7.03574 7.47319 7.77392 7.84067 7.96930 8.53074 8.66847 9.24580
9.83069 10.43237 11.27834
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.028020 B = 0.002465 C = 0.002340
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 999.040182 B =11357.343472 C =11962.089652
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.094 4.094
3 H 0.084 0.916
4 C 0.100 3.900
5 N -0.630 5.630
6 C 0.694 3.306
7 O -0.580 6.580
8 N -0.737 5.737
9 C 0.166 3.834
10 C -0.147 4.147
11 C 0.171 3.829
12 N -0.594 5.594
13 C -0.257 4.257
14 H 0.063 0.937
15 C 0.010 3.990
16 N -0.902 5.902
17 Si 0.904 3.096
18 H -0.283 1.283
19 H -0.290 1.290
20 H -0.282 1.282
21 C 0.149 3.851
22 C -0.138 4.138
23 C 0.159 3.841
24 C -0.473 4.473
25 S 1.232 4.768
26 O -0.858 6.858
27 C -0.437 4.437
28 H 0.062 0.938
29 H 0.058 0.942
30 H 0.063 0.937
31 H 0.100 0.900
32 H 0.097 0.903
33 H 0.390 0.610
34 H 0.079 0.921
35 H 0.052 0.948
36 H 0.054 0.946
37 H 0.017 0.983
38 H 0.099 0.901
39 H 0.256 0.744
40 H 0.019 0.981
41 H 0.057 0.943
42 H 0.053 0.947
43 H 0.061 0.939
44 H 0.114 0.886
45 H 0.076 0.924
46 H 0.094 0.906
47 H 0.115 0.885
48 H 0.120 0.880
49 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.588 -15.841 -15.844 22.554
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.114 4.114
3 H 0.102 0.898
4 C -0.024 4.024
5 N -0.367 5.367
6 C 0.395 3.605
7 O -0.457 6.457
8 N -0.392 5.392
9 C 0.062 3.938
10 C -0.188 4.188
11 C 0.045 3.955
12 N -0.317 5.317
13 C -0.387 4.387
14 H 0.080 0.920
15 C -0.189 4.189
16 N -0.546 5.546
17 Si 0.733 3.267
18 H -0.209 1.209
19 H -0.216 1.216
20 H -0.209 1.209
21 C 0.022 3.978
22 C -0.179 4.179
23 C 0.032 3.968
24 C -0.612 4.612
25 S 1.432 4.568
26 O -0.853 6.853
27 C -0.574 4.574
28 H 0.081 0.919
29 H 0.077 0.923
30 H 0.082 0.918
31 H 0.118 0.882
32 H 0.115 0.885
33 H 0.226 0.774
34 H 0.097 0.903
35 H 0.070 0.930
36 H 0.073 0.927
37 H 0.035 0.965
38 H 0.117 0.883
39 H 0.066 0.934
40 H 0.037 0.963
41 H 0.076 0.924
42 H 0.071 0.929
43 H 0.080 0.920
44 H 0.132 0.868
45 H 0.094 0.906
46 H 0.113 0.887
47 H 0.133 0.867
48 H 0.139 0.861
49 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges 3.742 -16.116 -15.647 22.772
hybrid contribution -1.120 1.886 -1.025 2.421
sum 2.622 -14.231 -16.671 22.075
Atomic orbital electron populations
1.21948 0.93701 1.02498 1.02577 1.21416 0.97279 1.00185 0.92566
0.89775 1.21886 0.89054 0.95443 0.95999 1.45941 1.07588 1.31634
1.51496 1.16172 0.84013 0.80862 0.79413 1.90930 1.44523 1.54237
1.56031 1.45794 1.05529 1.31033 1.56868 1.20948 0.96712 0.85390
0.90700 1.22611 1.00232 1.01590 0.94353 1.20925 0.86050 0.89506
0.99067 1.44030 1.14038 1.72275 1.01329 1.19077 0.88059 1.38952
0.92625 0.91978 1.25348 0.95993 0.98438 0.99117 1.69891 1.14867
1.49592 1.20240 0.86370 0.81238 0.78571 0.80527 1.20936 1.21582
1.20869 1.20850 0.98807 0.92343 0.85824 1.22348 0.95304 1.00993
0.99212 1.20266 0.83339 1.03590 0.89593 1.28449 1.10647 1.15663
1.06443 1.70204 0.85669 1.00866 1.00045 1.93102 1.72998 1.76062
1.43173 1.27953 1.18568 1.07939 1.02975 0.91876 0.92285 0.91771
0.88187 0.88500 0.77416 0.90276 0.92960 0.92733 0.96472 0.88262
0.93388 0.96277 0.92415 0.92882 0.91993 0.86780 0.90582 0.88747
0.86676 0.86139 0.89738
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 47.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.79 8.79 37.15 0.33 -0.47 16
2 C -0.09 -0.57 2.10 -91.14 -0.19 -0.76 16
3 H 0.08 0.70 7.33 -51.92 -0.38 0.32 16
4 C 0.10 0.53 4.89 -4.78 -0.02 0.51 16
5 N -0.63 -5.56 2.10 -183.21 -0.38 -5.94 16
6 C 0.69 9.38 7.70 -86.92 -0.67 8.71 16
7 O -0.58 -10.49 15.01 5.28 0.08 -10.41 16
8 N -0.74 -9.45 4.84 -58.63 -0.28 -9.74 16
9 C 0.17 2.77 2.38 -67.89 -0.16 2.60 16
10 C -0.15 -2.86 5.65 -26.61 -0.15 -3.01 16
11 C 0.17 4.09 5.25 -3.71 -0.02 4.07 16
12 N -0.59 -14.51 3.00 -172.33 -0.52 -15.03 16
13 C -0.26 -6.88 9.55 -15.06 -0.14 -7.03 16
14 H 0.06 1.62 7.83 -52.49 -0.41 1.21 16
15 C 0.01 0.28 5.30 -17.43 -0.09 0.18 16
16 N -0.90 -25.84 10.68 55.49 0.59 -25.25 16
17 Si 0.90 21.25 29.56 -169.99 -5.02 16.23 16
18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
20 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16
21 C 0.15 2.98 6.52 -3.71 -0.02 2.96 16
22 C -0.14 -2.19 5.55 -26.61 -0.15 -2.33 16
23 C 0.16 1.27 6.14 -5.82 -0.04 1.23 16
24 C -0.47 -3.69 6.10 38.50 0.23 -3.46 16
25 S 1.23 8.49 11.67 -107.50 -1.25 7.24 16
26 O -0.86 -11.74 18.13 -35.23 -0.64 -12.38 16
27 C -0.44 -2.63 5.91 37.32 0.22 -2.41 16
28 H 0.06 0.36 6.93 -51.93 -0.36 0.00 16
29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16
30 H 0.06 0.24 8.13 -51.93 -0.42 -0.18 16
31 H 0.10 0.19 6.72 -51.93 -0.35 -0.16 16
32 H 0.10 0.47 5.99 -51.93 -0.31 0.16 16
33 H 0.39 3.84 4.73 -40.82 -0.19 3.65 16
34 H 0.08 1.51 7.65 -51.93 -0.40 1.12 16
35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16
36 H 0.05 1.08 8.09 -51.93 -0.42 0.66 16
37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
38 H 0.10 2.68 5.98 -51.93 -0.31 2.37 16
39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16
40 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16
41 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16
42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16
43 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16
44 H 0.11 1.22 6.51 -51.93 -0.34 0.88 16
45 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16
46 H 0.09 0.88 8.02 -51.78 -0.42 0.47 16
47 H 0.11 0.90 8.14 -51.84 -0.42 0.48 16
48 H 0.12 0.49 7.96 -51.93 -0.41 0.08 16
49 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16
LS Contribution 379.52 15.07 5.72 5.72
Total: -1.00 -36.90 379.52 -10.66 -47.56
By element:
Atomic # 1 Polarization: 9.27 SS G_CDS: -8.07 Total: 1.20 kcal
Atomic # 6 Polarization: 1.68 SS G_CDS: -0.88 Total: 0.81 kcal
Atomic # 7 Polarization: -55.36 SS G_CDS: -0.59 Total: -55.95 kcal
Atomic # 8 Polarization: -22.24 SS G_CDS: -0.56 Total: -22.80 kcal
Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal
Atomic # 16 Polarization: 8.49 SS G_CDS: -1.25 Total: 7.24 kcal
Total LS contribution 5.72 Total: 5.72 kcal
Total: -36.90 -10.66 -47.56 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001668523419.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.253 kcal
(2) G-P(sol) polarization free energy of solvation -36.898 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.645 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.659 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.558 kcal
(6) G-S(sol) free energy of system = (1) + (5) -28.305 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.42 seconds