Wall clock time and date at job start Sat Apr 11 2020 06:53:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52990 * 1
3 3 H 1.09008 * 109.29469 * 2 1
4 4 C 1.51658 * 109.38661 * 119.73851 * 2 1 3
5 5 N 1.46394 * 104.21605 * 220.95177 * 4 2 1
6 6 C 1.34777 * 117.29990 * 87.85808 * 5 4 2
7 7 O 1.21592 * 119.99804 * 174.20766 * 6 5 4
8 8 N 1.34773 * 120.00236 * 354.19544 * 6 5 4
9 9 C 1.46496 * 120.00105 * 184.91123 * 8 6 5
10 10 C 1.53045 * 109.46398 * 275.07400 * 9 8 6
11 11 C 1.53189 * 109.31410 * 178.61379 * 10 9 8
12 12 N 1.46922 * 108.77422 * 54.63629 * 11 10 9
13 13 C 1.36937 * 120.63034 * 126.41525 * 12 11 10
14 14 H 1.08001 * 119.99952 * 215.80502 * 13 12 11
15 15 C 1.38817 * 120.00196 * 35.79831 * 13 12 11
16 16 N 1.31614 * 119.99794 * 356.64968 * 15 13 12
17 17 Si 1.86803 * 120.00247 * 176.64746 * 15 13 12
18 18 H 1.48502 * 109.46766 * 60.00011 * 17 15 13
19 19 H 1.48496 * 109.47021 * 180.02562 * 17 15 13
20 20 H 1.48501 * 109.46888 * 300.00512 * 17 15 13
21 21 C 1.46926 * 118.74163 * 306.38935 * 12 11 10
22 22 C 1.53042 * 109.46207 * 155.00467 * 9 8 6
23 23 C 1.40464 * 125.39336 * 267.82981 * 5 4 2
24 24 C 1.55520 * 108.67781 * 61.99801 * 23 5 4
25 25 S 1.79598 * 109.61041 * 292.81138 * 24 23 5
26 26 O 1.42104 * 109.40280 * 206.65993 * 25 24 23
27 27 C 1.53317 * 109.38339 * 240.27051 * 2 1 3
28 28 H 1.09002 * 109.47274 * 300.25970 * 1 2 3
29 29 H 1.08997 * 109.47402 * 60.26279 * 1 2 3
30 30 H 1.09001 * 109.46983 * 180.26084 * 1 2 3
31 31 H 1.09001 * 110.47157 * 102.28495 * 4 2 1
32 32 H 1.08999 * 110.47203 * 339.62524 * 4 2 1
33 33 H 0.96994 * 119.99770 * 4.92286 * 8 6 5
34 34 H 1.09000 * 109.46023 * 35.03053 * 9 8 6
35 35 H 1.09000 * 109.49510 * 298.57191 * 10 9 8
36 36 H 1.09007 * 109.49517 * 58.65951 * 10 9 8
37 37 H 1.08995 * 109.58505 * 294.84523 * 11 10 9
38 38 H 1.09002 * 109.58290 * 174.42465 * 11 10 9
39 39 H 0.97001 * 120.00451 * 179.97438 * 16 15 13
40 40 H 1.09005 * 109.58056 * 293.82401 * 21 12 11
41 41 H 1.08992 * 109.58616 * 173.39821 * 21 12 11
42 42 H 1.08994 * 109.49918 * 301.33991 * 22 9 8
43 43 H 1.09003 * 109.49443 * 61.43478 * 22 9 8
44 44 H 1.09004 * 109.62854 * 181.79910 * 23 5 4
45 45 H 1.09000 * 109.63014 * 302.18723 * 23 5 4
46 46 H 1.09001 * 109.45563 * 52.66753 * 24 23 5
47 47 H 1.08995 * 109.45936 * 172.60254 * 24 23 5
48 48 H 1.08991 * 109.17617 * 320.15679 * 27 2 1
49 49 H 1.08995 * 109.17714 * 79.43828 * 27 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8901 1.0289 0.0000
4 6 2.0333 -0.7096 1.2422
5 7 3.1637 0.1062 1.6891
6 6 2.8945 1.1344 2.5179
7 8 3.8045 1.7786 3.0029
8 7 1.6166 1.4486 2.8090
9 6 1.3198 2.6304 3.6222
10 6 1.4157 2.2658 5.1056
11 6 1.1388 3.5119 5.9525
12 7 -0.1570 4.0771 5.5525
13 6 -1.1310 4.3174 6.4847
14 1 -2.1700 4.1676 6.2310
15 6 -0.7828 4.7534 7.7558
16 7 0.4856 4.8727 8.0861
17 14 -2.1145 5.1709 8.9974
18 1 -2.9525 3.9706 9.2469
19 1 -1.4856 5.6092 10.2692
20 1 -2.9641 6.2653 8.4629
21 6 -0.3879 4.3802 4.1335
22 6 -0.0939 3.1244 3.3070
23 6 4.5057 -0.0943 1.3259
24 6 4.6355 0.0755 -0.2145
25 16 3.7635 -1.2579 -1.0435
26 8 4.3493 -1.4843 -2.3183
27 6 2.0387 -0.7172 -1.2559
28 1 -0.3634 0.5179 0.8876
29 1 -0.3634 0.5097 -0.8923
30 1 -0.3633 -1.0277 0.0047
31 1 2.3648 -1.7186 0.9969
32 1 1.2569 -0.7369 2.0067
33 1 0.8934 0.8921 2.4801
34 1 2.0387 3.4175 3.3949
35 1 0.6800 1.4962 5.3392
36 1 2.4160 1.8919 5.3244
37 1 1.9253 4.2481 5.7872
38 1 1.1080 3.2375 7.0070
39 1 0.7290 5.1777 8.9741
40 1 0.2742 5.1874 3.8200
41 1 -1.4260 4.6788 3.9879
42 1 -0.1681 3.3618 2.2458
43 1 -0.8154 2.3468 3.5576
44 1 5.1349 0.6397 1.8295
45 1 4.8159 -1.0996 1.6110
46 1 4.2011 1.0298 -0.5124
47 1 5.6885 0.0531 -0.4949
48 1 1.4120 -1.5875 -1.4499
49 1 1.9796 -0.0369 -2.1054
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001668523419.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:53:58
Heat of formation + Delta-G solvation = -54.996588 kcal
Electronic energy + Delta-G solvation = -29556.416925 eV
Core-core repulsion = 25645.252222 eV
Total energy + Delta-G solvation = -3911.164703 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.172 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-41.91871 -39.38892 -38.12992 -36.81026 -36.28046 -35.19990 -33.96609 -32.14093
-31.51208 -30.59045 -28.31093 -27.41128 -26.92989 -24.75707 -23.80876 -23.17339
-21.78847 -21.12557 -20.66770 -19.39120 -18.59146 -18.33068 -17.67359 -17.18398
-16.86281 -16.35202 -16.17602 -15.71451 -15.64328 -15.49892 -15.26148 -15.20647
-14.74092 -14.65352 -14.43485 -14.12483 -13.96399 -13.80338 -13.59044 -13.24758
-13.20720 -13.13877 -12.74709 -12.72892 -12.57215 -12.47861 -12.26251 -12.10123
-12.04322 -11.90814 -11.81033 -11.75645 -11.51934 -11.39086 -11.14058 -10.97707
-10.52151 -10.06163 -9.48928 -9.15447 -8.54334 -7.83021 -5.40662 0.44188
1.49887 1.52309 1.58787 1.68647 1.76999 2.15542 2.52843 2.72217
2.96040 3.33560 3.66314 3.73122 3.77441 3.92816 3.94049 4.03565
4.13871 4.17091 4.38029 4.39259 4.40607 4.55075 4.56746 4.67361
4.74337 4.81361 4.84466 4.87507 4.92175 4.97312 5.03662 5.11516
5.12954 5.14325 5.21989 5.28862 5.37628 5.46838 5.56018 5.67183
5.67643 5.81346 5.85473 5.92204 6.48800 7.02115 7.20452 7.64345
7.87536 8.43015 9.21257
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.028020 B = 0.002465 C = 0.002340
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 999.040182 B =11357.343472 C =11962.089652
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.090 4.090
3 H 0.059 0.941
4 C 0.088 3.912
5 N -0.616 5.616
6 C 0.689 3.311
7 O -0.632 6.632
8 N -0.723 5.723
9 C 0.180 3.820
10 C -0.130 4.130
11 C 0.180 3.820
12 N -0.611 5.611
13 C -0.264 4.264
14 H 0.072 0.928
15 C -0.048 4.048
16 N -0.937 5.937
17 Si 0.970 3.030
18 H -0.272 1.272
19 H -0.298 1.298
20 H -0.276 1.276
21 C 0.142 3.858
22 C -0.121 4.121
23 C 0.155 3.845
24 C -0.470 4.470
25 S 1.291 4.709
26 O -0.925 6.925
27 C -0.431 4.431
28 H 0.062 0.938
29 H 0.050 0.950
30 H 0.088 0.912
31 H 0.144 0.856
32 H 0.112 0.888
33 H 0.409 0.591
34 H 0.050 0.950
35 H 0.061 0.939
36 H 0.044 0.956
37 H -0.018 1.018
38 H 0.064 0.936
39 H 0.249 0.751
40 H 0.008 0.992
41 H 0.067 0.933
42 H 0.087 0.913
43 H 0.077 0.923
44 H 0.084 0.916
45 H 0.120 0.880
46 H 0.074 0.926
47 H 0.114 0.886
48 H 0.152 0.848
49 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.230 -18.517 -17.224 25.290
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.111 4.111
3 H 0.077 0.923
4 C -0.033 4.033
5 N -0.351 5.351
6 C 0.391 3.609
7 O -0.513 6.513
8 N -0.380 5.380
9 C 0.074 3.926
10 C -0.170 4.170
11 C 0.053 3.947
12 N -0.335 5.335
13 C -0.394 4.394
14 H 0.090 0.910
15 C -0.244 4.244
16 N -0.583 5.583
17 Si 0.798 3.202
18 H -0.197 1.197
19 H -0.224 1.224
20 H -0.202 1.202
21 C 0.016 3.984
22 C -0.160 4.160
23 C 0.029 3.971
24 C -0.609 4.609
25 S 1.492 4.508
26 O -0.921 6.921
27 C -0.569 4.569
28 H 0.081 0.919
29 H 0.070 0.930
30 H 0.107 0.893
31 H 0.162 0.838
32 H 0.130 0.870
33 H 0.248 0.752
34 H 0.068 0.932
35 H 0.080 0.920
36 H 0.063 0.937
37 H 0.000 1.000
38 H 0.083 0.917
39 H 0.059 0.941
40 H 0.026 0.974
41 H 0.086 0.914
42 H 0.106 0.894
43 H 0.096 0.904
44 H 0.102 0.898
45 H 0.138 0.862
46 H 0.093 0.907
47 H 0.132 0.868
48 H 0.169 0.831
49 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges 1.361 -18.853 -17.103 25.492
hybrid contribution -0.401 2.755 -0.650 2.859
sum 0.960 -16.098 -17.753 23.984
Atomic orbital electron populations
1.21977 0.92534 1.04053 1.02232 1.21341 0.98184 0.98855 0.92695
0.92281 1.22362 0.88237 0.96838 0.95906 1.45969 1.08851 1.30421
1.49854 1.16404 0.83366 0.81403 0.79742 1.90911 1.45998 1.56246
1.58131 1.45345 1.06164 1.30198 1.56264 1.20494 0.96795 0.86062
0.89260 1.22329 0.99734 0.99172 0.95771 1.20592 0.85423 0.90542
0.98118 1.44261 1.13408 1.72831 1.02978 1.19482 0.88925 1.37863
0.93162 0.91034 1.26141 0.97892 0.98997 1.01336 1.70111 1.16854
1.51056 1.20263 0.85309 0.78618 0.78582 0.77701 1.19750 1.22429
1.20189 1.21038 0.99162 0.94281 0.83898 1.22133 0.94527 0.99098
1.00273 1.20397 0.82534 1.05100 0.89092 1.28420 1.10883 1.15086
1.06530 1.69284 0.84972 0.99208 0.97296 1.92992 1.75071 1.77920
1.46120 1.27925 1.17647 1.08872 1.02483 0.91883 0.93039 0.89305
0.83792 0.87034 0.75157 0.93199 0.92026 0.93742 0.99974 0.91733
0.94132 0.97407 0.91425 0.89448 0.90386 0.89773 0.86187 0.90655
0.86780 0.83055 0.91403
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.97 8.79 71.98 0.63 -0.34 16
2 C -0.09 -0.78 2.10 -11.13 -0.02 -0.80 16
3 H 0.06 0.86 7.33 -2.38 -0.02 0.84 16
4 C 0.09 0.56 4.89 85.96 0.42 0.99 16
5 N -0.62 -9.48 2.10 -851.82 -1.79 -11.26 16
6 C 0.69 17.96 7.70 179.06 1.38 19.33 16
7 O -0.63 -23.43 15.01 -4.01 -0.06 -23.49 16
8 N -0.72 -17.11 4.84 -457.68 -2.21 -19.33 16
9 C 0.18 5.84 2.38 45.02 0.11 5.95 16
10 C -0.13 -5.07 5.65 30.67 0.17 -4.90 16
11 C 0.18 9.00 5.25 86.36 0.45 9.45 16
12 N -0.61 -30.21 3.00 -699.12 -2.09 -32.30 16
13 C -0.26 -14.15 9.55 84.03 0.80 -13.34 16
14 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16
15 C -0.05 -2.67 5.30 84.86 0.45 -2.22 16
16 N -0.94 -55.79 10.68 21.65 0.23 -55.56 16
17 Si 0.97 44.05 29.56 68.60 2.03 46.08 16
18 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16
19 H -0.30 -13.78 7.11 99.48 0.71 -13.08 16
20 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16
21 C 0.14 5.58 6.52 86.36 0.56 6.14 16
22 C -0.12 -3.51 5.55 30.67 0.17 -3.34 16
23 C 0.16 2.23 6.14 88.34 0.54 2.77 16
24 C -0.47 -6.89 6.10 72.85 0.44 -6.44 16
25 S 1.29 14.81 11.67 -56.49 -0.66 14.16 16
26 O -0.93 -24.41 18.13 -148.98 -2.70 -27.11 16
27 C -0.43 -3.80 5.91 72.09 0.43 -3.38 16
28 H 0.06 0.44 6.93 -2.39 -0.02 0.42 16
29 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16
30 H 0.09 0.18 8.13 -2.39 -0.02 0.16 16
31 H 0.14 -0.30 6.72 -2.39 -0.02 -0.31 16
32 H 0.11 0.50 5.99 -2.39 -0.01 0.49 16
33 H 0.41 6.55 4.73 -92.71 -0.44 6.12 16
34 H 0.05 1.95 7.65 -2.39 -0.02 1.93 16
35 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16
36 H 0.04 1.81 8.09 -2.38 -0.02 1.79 16
37 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16
38 H 0.06 3.68 5.98 -2.39 -0.01 3.66 16
39 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16
40 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16
41 H 0.07 2.50 7.93 -2.39 -0.02 2.48 16
42 H 0.09 2.01 8.14 -2.39 -0.02 2.00 16
43 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16
44 H 0.08 1.82 6.51 -2.38 -0.02 1.80 16
45 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16
46 H 0.07 1.41 8.02 -2.48 -0.02 1.39 16
47 H 0.11 1.74 8.14 -2.45 -0.02 1.72 16
48 H 0.15 0.50 7.96 -2.39 -0.02 0.48 16
49 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16
Total: -1.00 -86.37 379.52 -0.21 -86.58
By element:
Atomic # 1 Polarization: 11.87 SS G_CDS: 0.50 Total: 12.38 kcal
Atomic # 6 Polarization: 3.32 SS G_CDS: 6.54 Total: 9.86 kcal
Atomic # 7 Polarization: -112.59 SS G_CDS: -5.86 Total: -118.45 kcal
Atomic # 8 Polarization: -47.84 SS G_CDS: -2.76 Total: -50.60 kcal
Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal
Atomic # 16 Polarization: 14.81 SS G_CDS: -0.66 Total: 14.16 kcal
Total: -86.37 -0.21 -86.58 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001668523419.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.584 kcal
(2) G-P(sol) polarization free energy of solvation -86.369 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.785 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.211 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.580 kcal
(6) G-S(sol) free energy of system = (1) + (5) -54.997 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds