Wall clock time and date at job start Sat Apr 11 2020 06:53:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81407 * 1
3 3 C 1.81397 * 102.99717 * 2 1
4 4 H 1.09000 * 109.47438 * 55.00570 * 3 2 1
5 5 C 1.52996 * 109.47490 * 295.00002 * 3 2 1
6 6 C 1.53004 * 109.47153 * 174.99952 * 3 2 1
7 7 C 1.50700 * 109.47067 * 295.00450 * 6 3 2
8 8 O 1.21287 * 119.99909 * 359.97438 * 7 6 3
9 9 N 1.34779 * 120.00090 * 179.97438 * 7 6 3
10 10 C 1.46504 * 119.99582 * 359.97438 * 9 7 6
11 11 C 1.46504 * 120.00031 * 179.97438 * 9 7 6
12 12 H 1.09000 * 110.27419 * 2.08714 * 11 9 7
13 13 C 1.54591 * 110.30625 * 124.28041 * 11 9 7
14 14 C 1.54940 * 102.91912 * 140.87135 * 13 11 9
15 15 N 1.48527 * 103.22612 * 322.58612 * 14 13 11
16 16 C 1.46902 * 110.99964 * 159.71987 * 15 14 13
17 17 C 1.50702 * 109.47027 * 52.60122 * 16 15 14
18 18 O 1.21293 * 120.00255 * 0.02562 * 17 16 15
19 19 N 1.34777 * 119.99928 * 179.72353 * 17 16 15
20 20 C 1.37101 * 120.00327 * 180.27606 * 19 17 16
21 21 H 1.08001 * 119.99426 * 0.02562 * 20 19 17
22 22 C 1.38942 * 120.00412 * 180.02562 * 20 19 17
23 23 N 1.31411 * 120.00042 * 180.02562 * 22 20 19
24 24 Si 1.86800 * 120.00013 * 0.02562 * 22 20 19
25 25 H 1.48498 * 109.47118 * 89.99593 * 24 22 20
26 26 H 1.48494 * 109.47201 * 209.99761 * 24 22 20
27 27 H 1.48498 * 109.47011 * 329.99735 * 24 22 20
28 28 C 1.47895 * 105.82449 * 39.20715 * 15 14 13
29 29 H 1.08998 * 109.47046 * 300.00027 * 1 2 3
30 30 H 1.08998 * 109.47311 * 59.99767 * 1 2 3
31 31 H 1.08997 * 109.47133 * 179.97438 * 1 2 3
32 32 H 1.09007 * 109.47590 * 179.97438 * 5 3 2
33 33 H 1.09002 * 109.47064 * 299.99928 * 5 3 2
34 34 H 1.09002 * 109.46869 * 60.00155 * 5 3 2
35 35 H 1.08995 * 109.47614 * 175.00141 * 6 3 2
36 36 H 1.09002 * 109.46931 * 54.99647 * 6 3 2
37 37 H 1.08999 * 109.46689 * 269.99789 * 10 9 7
38 38 H 1.08998 * 109.47267 * 30.00525 * 10 9 7
39 39 H 1.08997 * 109.46381 * 150.00501 * 10 9 7
40 40 H 1.09001 * 110.72628 * 259.22892 * 13 11 9
41 41 H 1.09001 * 110.72432 * 22.34093 * 13 11 9
42 42 H 1.09004 * 110.66630 * 204.15153 * 14 13 11
43 43 H 1.09002 * 110.66469 * 81.02363 * 14 13 11
44 44 H 1.09004 * 109.47131 * 292.60366 * 16 15 14
45 45 H 1.09000 * 109.47732 * 172.60477 * 16 15 14
46 46 H 0.97000 * 120.00317 * 0.28382 * 19 17 16
47 47 H 0.97005 * 120.00014 * 180.02562 * 23 22 20
48 48 H 1.09003 * 109.92105 * 94.01940 * 28 15 14
49 49 H 1.08999 * 109.92304 * 215.11970 * 28 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8141 0.0000 0.0000
3 6 2.2220 1.7675 0.0000
4 1 1.7295 2.2541 0.8419
5 6 1.7428 2.4016 -1.3073
6 6 3.7370 1.9413 0.1257
7 6 4.1919 1.4270 1.4672
8 8 3.3840 0.9672 2.2462
9 7 5.4967 1.4780 1.8013
10 6 6.4726 2.0328 0.8600
11 6 5.9389 0.9785 3.1057
12 1 5.0939 0.5702 3.6600
13 6 7.0348 -0.0967 2.9250
14 6 8.0199 0.2152 4.0795
15 7 8.0141 1.6993 4.1395
16 6 8.4938 2.1753 5.4439
17 6 9.8264 1.5419 5.7507
18 8 10.3275 0.7703 4.9603
19 7 10.4643 1.8376 6.9005
20 6 11.6793 1.2658 7.1771
21 1 12.1254 0.5788 6.4732
22 6 12.3366 1.5702 8.3627
23 7 13.5015 1.0225 8.6275
24 14 11.5646 2.7579 9.5804
25 1 10.7137 2.0040 10.5357
26 1 12.6349 3.4686 10.3251
27 1 10.7316 3.7455 8.8483
28 6 6.6110 2.1067 3.9100
29 1 -0.3633 0.5138 0.8900
30 1 -0.3634 0.5138 -0.8899
31 1 -0.3633 -1.0276 -0.0005
32 1 1.9875 3.4638 -1.3071
33 1 2.2354 1.9151 -2.1491
34 1 0.6635 2.2779 -1.3968
35 1 3.9902 2.9976 0.0367
36 1 4.2339 1.3804 -0.6659
37 1 6.8549 1.2364 0.2215
38 1 5.9921 2.7932 0.2444
39 1 7.2971 2.4816 1.4141
40 1 6.6158 -1.0969 3.0351
41 1 7.5245 0.0104 1.9571
42 1 9.0174 -0.1564 3.8451
43 1 7.6605 -0.2092 5.0170
44 1 7.7753 1.9024 6.2169
45 1 8.6043 3.2593 5.4170
46 1 10.0637 2.4548 7.5325
47 1 13.9602 1.2347 9.4554
48 1 6.1011 2.2366 4.8646
49 1 6.5824 3.0379 3.3443
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001715010639.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:53:59
Heat of formation + Delta-G solvation = -48.222873 kcal
Electronic energy + Delta-G solvation = -28000.093834 eV
Core-core repulsion = 24089.222861 eV
Total energy + Delta-G solvation = -3910.870972 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.172 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-40.45090 -39.08689 -37.67576 -35.25476 -34.93733 -33.94890 -31.82103 -31.36574
-29.61474 -28.76865 -27.91504 -27.25084 -26.22193 -24.04873 -22.79006 -21.16874
-20.86959 -19.43386 -19.09441 -18.30232 -17.42849 -16.98398 -16.55793 -16.06189
-15.75196 -15.44819 -14.95152 -14.81461 -14.70610 -14.49041 -14.06524 -13.92738
-13.59622 -13.41319 -13.32553 -13.10192 -13.04988 -12.65054 -12.60788 -12.54528
-12.37048 -12.29002 -11.96425 -11.87057 -11.81197 -11.67870 -11.54289 -11.51228
-11.16220 -11.05040 -10.64262 -10.51914 -10.09687 -9.99489 -9.85859 -9.57016
-8.81555 -8.48083 -8.22066 -8.04438 -7.72932 -6.33184 -3.84679 1.41914
2.30892 2.49568 2.78991 3.01474 3.05667 3.14058 3.70237 4.03952
4.09097 4.16186 4.20311 4.55938 4.66778 4.73564 4.80113 4.82357
4.86277 4.87561 4.91515 5.03568 5.10405 5.13891 5.19611 5.24573
5.33158 5.37107 5.39992 5.41549 5.47556 5.61322 5.63082 5.64890
5.75357 5.76983 5.86464 5.92651 5.99907 6.23267 6.44549 6.60347
7.10264 7.14344 7.26709 7.55884 8.04101 8.12475 8.57300 8.92845
9.39944 9.79977 10.79729
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.031821 B = 0.001853 C = 0.001845
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 879.702471 B =15104.098889 C =15175.782353
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 S -0.238 6.238
3 C -0.046 4.046
4 H 0.093 0.907
5 C -0.148 4.148
6 C -0.122 4.122
7 C 0.508 3.492
8 O -0.521 6.521
9 N -0.606 5.606
10 C 0.073 3.927
11 C 0.132 3.868
12 H 0.105 0.895
13 C -0.134 4.134
14 C 0.038 3.962
15 N -0.493 5.493
16 C 0.033 3.967
17 C 0.451 3.549
18 O -0.562 6.562
19 N -0.588 5.588
20 C -0.305 4.305
21 H 0.120 0.880
22 C 0.042 3.958
23 N -0.880 5.880
24 Si 0.879 3.121
25 H -0.271 1.271
26 H -0.276 1.276
27 H -0.269 1.269
28 C 0.024 3.976
29 H 0.075 0.925
30 H 0.073 0.927
31 H 0.098 0.902
32 H 0.066 0.934
33 H 0.069 0.931
34 H 0.059 0.941
35 H 0.106 0.894
36 H 0.101 0.899
37 H 0.057 0.943
38 H 0.068 0.932
39 H 0.087 0.913
40 H 0.072 0.928
41 H 0.079 0.921
42 H 0.122 0.878
43 H 0.039 0.961
44 H 0.051 0.949
45 H 0.091 0.909
46 H 0.370 0.630
47 H 0.274 0.726
48 H 0.049 0.951
49 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.628 5.278 -18.094 31.013
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.292 4.292
2 S -0.012 6.012
3 C -0.175 4.175
4 H 0.111 0.889
5 C -0.207 4.207
6 C -0.163 4.163
7 C 0.295 3.705
8 O -0.397 6.397
9 N -0.340 5.340
10 C -0.070 4.070
11 C 0.028 3.972
12 H 0.123 0.877
13 C -0.173 4.173
14 C -0.089 4.089
15 N -0.218 5.218
16 C -0.099 4.099
17 C 0.237 3.763
18 O -0.445 6.445
19 N -0.227 5.227
20 C -0.434 4.434
21 H 0.138 0.862
22 C -0.161 4.161
23 N -0.520 5.520
24 Si 0.706 3.294
25 H -0.196 1.196
26 H -0.201 1.201
27 H -0.195 1.195
28 C -0.106 4.106
29 H 0.094 0.906
30 H 0.092 0.908
31 H 0.117 0.883
32 H 0.085 0.915
33 H 0.088 0.912
34 H 0.078 0.922
35 H 0.124 0.876
36 H 0.120 0.880
37 H 0.076 0.924
38 H 0.086 0.914
39 H 0.106 0.894
40 H 0.091 0.909
41 H 0.097 0.903
42 H 0.140 0.860
43 H 0.057 0.943
44 H 0.068 0.932
45 H 0.109 0.891
46 H 0.203 0.797
47 H 0.084 0.916
48 H 0.067 0.933
49 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -23.504 3.837 -18.432 30.115
hybrid contribution -1.740 1.806 1.826 3.102
sum -25.245 5.643 -16.607 30.739
Atomic orbital electron populations
1.23378 0.95043 1.06264 1.04564 1.86997 1.06492 1.09990 1.97716
1.22888 0.97836 0.95317 1.01434 0.88875 1.22110 1.01573 1.00915
0.96095 1.21559 0.94476 1.03568 0.96659 1.20502 0.82023 0.78994
0.88941 1.90745 1.52313 1.44772 1.51841 1.47879 1.06928 1.61990
1.17156 1.21838 0.93516 0.98513 0.93165 1.21970 0.97782 0.93883
0.83526 0.87725 1.22935 0.95786 0.97963 1.00620 1.23490 1.01986
0.87333 0.96118 1.64630 1.17283 1.10857 1.29037 1.22142 0.96171
1.00984 0.90568 1.19598 0.87229 0.86218 0.83244 1.90477 1.67859
1.38351 1.47803 1.42201 1.20153 1.42185 1.18195 1.19426 0.93855
1.24780 1.05293 0.86218 1.25038 0.95859 0.97847 0.97380 1.69621
1.13962 1.42973 1.25434 0.86678 0.79602 0.81255 0.81909 1.19646
1.20139 1.19475 1.23298 0.89260 0.98719 0.99284 0.90586 0.90845
0.88312 0.91544 0.91159 0.92230 0.87562 0.88037 0.92434 0.91381
0.89445 0.90906 0.90253 0.86036 0.94283 0.93151 0.89121 0.79680
0.91590 0.93301 0.90026
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.86 10.45 101.05 1.06 0.20 16
2 S -0.24 -2.38 20.24 -107.50 -2.18 -4.55 16
3 C -0.05 -0.35 2.44 -26.73 -0.07 -0.42 16
4 H 0.09 0.82 7.95 -51.92 -0.41 0.41 16
5 C -0.15 -0.76 9.10 37.16 0.34 -0.42 16
6 C -0.12 -0.89 3.73 -27.88 -0.10 -0.99 16
7 C 0.51 5.59 7.39 -10.98 -0.08 5.51 16
8 O -0.52 -7.56 14.15 5.55 0.08 -7.48 16
9 N -0.61 -6.32 2.77 -172.37 -0.48 -6.80 16
10 C 0.07 0.57 8.84 59.85 0.53 1.10 16
11 C 0.13 1.62 3.39 -66.57 -0.23 1.39 16
12 H 0.10 1.43 6.97 -51.93 -0.36 1.07 16
13 C -0.13 -1.73 6.65 -24.87 -0.17 -1.90 16
14 C 0.04 0.61 5.30 -1.90 -0.01 0.60 16
15 N -0.49 -7.70 5.26 -231.89 -1.22 -8.92 16
16 C 0.03 0.55 5.52 -4.97 -0.03 0.53 16
17 C 0.45 10.03 7.49 -10.98 -0.08 9.94 16
18 O -0.56 -14.39 13.10 5.55 0.07 -14.32 16
19 N -0.59 -13.85 5.09 -10.96 -0.06 -13.90 16
20 C -0.30 -8.52 10.16 -14.93 -0.15 -8.67 16
21 H 0.12 3.81 7.39 -52.49 -0.39 3.43 16
22 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16
23 N -0.88 -25.53 13.96 55.50 0.77 -24.76 16
24 Si 0.88 19.27 27.74 -169.99 -4.71 14.55 16
25 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16
26 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16
27 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16
28 C 0.02 0.30 5.85 -2.76 -0.02 0.28 16
29 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16
30 H 0.07 0.39 7.14 -51.93 -0.37 0.02 16
31 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16
32 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16
33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16
34 H 0.06 0.29 6.92 -51.93 -0.36 -0.07 16
35 H 0.11 0.52 7.40 -51.93 -0.38 0.13 16
36 H 0.10 0.66 8.11 -51.93 -0.42 0.24 16
37 H 0.06 0.43 7.87 -51.93 -0.41 0.02 16
38 H 0.07 0.36 6.44 -51.93 -0.33 0.02 16
39 H 0.09 0.80 6.97 -51.93 -0.36 0.43 16
40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16
41 H 0.08 0.99 6.84 -51.93 -0.36 0.64 16
42 H 0.12 2.36 5.97 -51.93 -0.31 2.05 16
43 H 0.04 0.64 8.02 -51.93 -0.42 0.23 16
44 H 0.05 0.76 7.81 -51.93 -0.41 0.35 16
45 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16
46 H 0.37 7.70 5.76 -40.82 -0.24 7.46 16
47 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16
48 H 0.05 0.60 7.57 -51.93 -0.39 0.21 16
49 H 0.08 0.95 7.12 -51.93 -0.37 0.58 16
LS Contribution 394.27 15.07 5.94 5.94
Total: -1.00 -33.64 394.27 -8.87 -42.51
By element:
Atomic # 1 Polarization: 17.54 SS G_CDS: -7.99 Total: 9.54 kcal
Atomic # 6 Polarization: 7.30 SS G_CDS: 0.90 Total: 8.19 kcal
Atomic # 7 Polarization: -53.40 SS G_CDS: -0.98 Total: -54.38 kcal
Atomic # 8 Polarization: -21.95 SS G_CDS: 0.15 Total: -21.80 kcal
Atomic # 14 Polarization: 19.27 SS G_CDS: -4.71 Total: 14.55 kcal
Atomic # 16 Polarization: -2.38 SS G_CDS: -2.18 Total: -4.55 kcal
Total LS contribution 5.94 Total: 5.94 kcal
Total: -33.64 -8.87 -42.51 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001715010639.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.715 kcal
(2) G-P(sol) polarization free energy of solvation -33.635 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.350 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.508 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.223 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds