Wall clock time and date at job start Sat Apr 11 2020 06:53:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81407 * 1
3 3 C 1.81397 * 102.99717 * 2 1
4 4 H 1.09000 * 109.47438 * 55.00570 * 3 2 1
5 5 C 1.52996 * 109.47490 * 295.00002 * 3 2 1
6 6 C 1.53004 * 109.47153 * 174.99952 * 3 2 1
7 7 C 1.50700 * 109.47067 * 295.00450 * 6 3 2
8 8 O 1.21287 * 119.99909 * 359.97438 * 7 6 3
9 9 N 1.34779 * 120.00090 * 179.97438 * 7 6 3
10 10 C 1.46504 * 119.99582 * 359.97438 * 9 7 6
11 11 C 1.46504 * 120.00031 * 179.97438 * 9 7 6
12 12 H 1.09000 * 110.27419 * 2.08714 * 11 9 7
13 13 C 1.54591 * 110.30625 * 124.28041 * 11 9 7
14 14 C 1.54940 * 102.91912 * 140.87135 * 13 11 9
15 15 N 1.48527 * 103.22612 * 322.58612 * 14 13 11
16 16 C 1.46902 * 110.99964 * 159.71987 * 15 14 13
17 17 C 1.50702 * 109.47027 * 52.60122 * 16 15 14
18 18 O 1.21293 * 120.00255 * 0.02562 * 17 16 15
19 19 N 1.34777 * 119.99928 * 179.72353 * 17 16 15
20 20 C 1.37101 * 120.00327 * 180.27606 * 19 17 16
21 21 H 1.08001 * 119.99426 * 0.02562 * 20 19 17
22 22 C 1.38942 * 120.00412 * 180.02562 * 20 19 17
23 23 N 1.31411 * 120.00042 * 180.02562 * 22 20 19
24 24 Si 1.86800 * 120.00013 * 0.02562 * 22 20 19
25 25 H 1.48498 * 109.47118 * 89.99593 * 24 22 20
26 26 H 1.48494 * 109.47201 * 209.99761 * 24 22 20
27 27 H 1.48498 * 109.47011 * 329.99735 * 24 22 20
28 28 C 1.47895 * 105.82449 * 39.20715 * 15 14 13
29 29 H 1.08998 * 109.47046 * 300.00027 * 1 2 3
30 30 H 1.08998 * 109.47311 * 59.99767 * 1 2 3
31 31 H 1.08997 * 109.47133 * 179.97438 * 1 2 3
32 32 H 1.09007 * 109.47590 * 179.97438 * 5 3 2
33 33 H 1.09002 * 109.47064 * 299.99928 * 5 3 2
34 34 H 1.09002 * 109.46869 * 60.00155 * 5 3 2
35 35 H 1.08995 * 109.47614 * 175.00141 * 6 3 2
36 36 H 1.09002 * 109.46931 * 54.99647 * 6 3 2
37 37 H 1.08999 * 109.46689 * 269.99789 * 10 9 7
38 38 H 1.08998 * 109.47267 * 30.00525 * 10 9 7
39 39 H 1.08997 * 109.46381 * 150.00501 * 10 9 7
40 40 H 1.09001 * 110.72628 * 259.22892 * 13 11 9
41 41 H 1.09001 * 110.72432 * 22.34093 * 13 11 9
42 42 H 1.09004 * 110.66630 * 204.15153 * 14 13 11
43 43 H 1.09002 * 110.66469 * 81.02363 * 14 13 11
44 44 H 1.09004 * 109.47131 * 292.60366 * 16 15 14
45 45 H 1.09000 * 109.47732 * 172.60477 * 16 15 14
46 46 H 0.97000 * 120.00317 * 0.28382 * 19 17 16
47 47 H 0.97005 * 120.00014 * 180.02562 * 23 22 20
48 48 H 1.09003 * 109.92105 * 94.01940 * 28 15 14
49 49 H 1.08999 * 109.92304 * 215.11970 * 28 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8141 0.0000 0.0000
3 6 2.2220 1.7675 0.0000
4 1 1.7295 2.2541 0.8419
5 6 1.7428 2.4016 -1.3073
6 6 3.7370 1.9413 0.1257
7 6 4.1919 1.4270 1.4672
8 8 3.3840 0.9672 2.2462
9 7 5.4967 1.4780 1.8013
10 6 6.4726 2.0328 0.8600
11 6 5.9389 0.9785 3.1057
12 1 5.0939 0.5702 3.6600
13 6 7.0348 -0.0967 2.9250
14 6 8.0199 0.2152 4.0795
15 7 8.0141 1.6993 4.1395
16 6 8.4938 2.1753 5.4439
17 6 9.8264 1.5419 5.7507
18 8 10.3275 0.7703 4.9603
19 7 10.4643 1.8376 6.9005
20 6 11.6793 1.2658 7.1771
21 1 12.1254 0.5788 6.4732
22 6 12.3366 1.5702 8.3627
23 7 13.5015 1.0225 8.6275
24 14 11.5646 2.7579 9.5804
25 1 10.7137 2.0040 10.5357
26 1 12.6349 3.4686 10.3251
27 1 10.7316 3.7455 8.8483
28 6 6.6110 2.1067 3.9100
29 1 -0.3633 0.5138 0.8900
30 1 -0.3634 0.5138 -0.8899
31 1 -0.3633 -1.0276 -0.0005
32 1 1.9875 3.4638 -1.3071
33 1 2.2354 1.9151 -2.1491
34 1 0.6635 2.2779 -1.3968
35 1 3.9902 2.9976 0.0367
36 1 4.2339 1.3804 -0.6659
37 1 6.8549 1.2364 0.2215
38 1 5.9921 2.7932 0.2444
39 1 7.2971 2.4816 1.4141
40 1 6.6158 -1.0969 3.0351
41 1 7.5245 0.0104 1.9571
42 1 9.0174 -0.1564 3.8451
43 1 7.6605 -0.2092 5.0170
44 1 7.7753 1.9024 6.2169
45 1 8.6043 3.2593 5.4170
46 1 10.0637 2.4548 7.5325
47 1 13.9602 1.2347 9.4554
48 1 6.1011 2.2366 4.8646
49 1 6.5824 3.0379 3.3443
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001715010639.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:53:59
Heat of formation + Delta-G solvation = -73.106017 kcal
Electronic energy + Delta-G solvation = -28001.172848 eV
Core-core repulsion = 24089.222861 eV
Total energy + Delta-G solvation = -3911.949986 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.172 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.41376 -40.52347 -39.06396 -36.35863 -35.80500 -35.52966 -33.79165 -32.61235
-30.30006 -29.66087 -28.82017 -28.23472 -27.31275 -25.75158 -23.43970 -22.46902
-21.73637 -21.30720 -20.19205 -19.94318 -18.32078 -17.68493 -17.64076 -17.39138
-16.98259 -16.60123 -16.43869 -16.12091 -15.69107 -15.38995 -15.14108 -15.02172
-14.71121 -14.49818 -14.42244 -14.21614 -14.03124 -13.91287 -13.63247 -13.39276
-13.18301 -13.11380 -13.05116 -12.98911 -12.87941 -12.68382 -12.59089 -12.41084
-12.32151 -12.27463 -12.06372 -11.98447 -11.74484 -11.47137 -10.79547 -10.64747
-10.30631 -10.22733 -9.60001 -9.37895 -8.46475 -8.41455 -6.02037 0.82727
1.29875 1.34704 1.43749 1.68987 1.72315 1.93585 2.00395 2.22399
2.66462 3.14591 3.18312 3.47875 3.63398 3.68817 3.76722 4.04879
4.14735 4.19030 4.22418 4.30036 4.31789 4.33537 4.34760 4.38648
4.42559 4.51440 4.56049 4.65281 4.67646 4.75557 4.78488 4.81071
4.88331 4.95031 5.01744 5.06002 5.10162 5.23181 5.28280 5.52528
5.58356 5.83576 5.89176 6.02703 6.46552 6.58764 6.88232 7.23728
7.38708 7.95461 8.75910
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.031821 B = 0.001853 C = 0.001845
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 879.702471 B =15104.098889 C =15175.782353
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.108 4.108
2 S -0.314 6.314
3 C -0.031 4.031
4 H 0.080 0.920
5 C -0.141 4.141
6 C -0.116 4.116
7 C 0.503 3.497
8 O -0.563 6.563
9 N -0.605 5.605
10 C 0.069 3.931
11 C 0.139 3.861
12 H 0.090 0.910
13 C -0.123 4.123
14 C 0.040 3.960
15 N -0.504 5.504
16 C 0.043 3.957
17 C 0.450 3.550
18 O -0.602 6.602
19 N -0.591 5.591
20 C -0.326 4.326
21 H 0.057 0.943
22 C -0.015 4.015
23 N -0.933 5.933
24 Si 0.963 3.037
25 H -0.259 1.259
26 H -0.275 1.275
27 H -0.231 1.231
28 C 0.032 3.968
29 H 0.074 0.926
30 H 0.092 0.908
31 H 0.102 0.898
32 H 0.086 0.914
33 H 0.073 0.927
34 H 0.061 0.939
35 H 0.141 0.859
36 H 0.113 0.887
37 H 0.061 0.939
38 H 0.102 0.898
39 H 0.076 0.924
40 H 0.074 0.926
41 H 0.083 0.917
42 H 0.082 0.918
43 H 0.030 0.970
44 H 0.077 0.923
45 H 0.122 0.878
46 H 0.389 0.611
47 H 0.279 0.721
48 H 0.058 0.942
49 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -27.577 8.694 -18.732 34.452
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.277 4.277
2 S -0.089 6.089
3 C -0.160 4.160
4 H 0.098 0.902
5 C -0.200 4.200
6 C -0.156 4.156
7 C 0.292 3.708
8 O -0.441 6.441
9 N -0.338 5.338
10 C -0.072 4.072
11 C 0.034 3.966
12 H 0.108 0.892
13 C -0.161 4.161
14 C -0.088 4.088
15 N -0.229 5.229
16 C -0.088 4.088
17 C 0.238 3.762
18 O -0.487 6.487
19 N -0.232 5.232
20 C -0.455 4.455
21 H 0.075 0.925
22 C -0.213 4.213
23 N -0.574 5.574
24 Si 0.783 3.217
25 H -0.184 1.184
26 H -0.200 1.200
27 H -0.154 1.154
28 C -0.097 4.097
29 H 0.093 0.907
30 H 0.110 0.890
31 H 0.121 0.879
32 H 0.105 0.895
33 H 0.092 0.908
34 H 0.080 0.920
35 H 0.158 0.842
36 H 0.131 0.869
37 H 0.079 0.921
38 H 0.120 0.880
39 H 0.095 0.905
40 H 0.092 0.908
41 H 0.102 0.898
42 H 0.100 0.900
43 H 0.048 0.952
44 H 0.095 0.905
45 H 0.140 0.860
46 H 0.224 0.776
47 H 0.088 0.912
48 H 0.077 0.923
49 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges -26.469 7.272 -19.112 33.448
hybrid contribution -0.799 0.631 1.902 2.157
sum -27.268 7.902 -17.210 33.199
Atomic orbital electron populations
1.23361 0.92089 1.06855 1.05378 1.87210 1.10044 1.13749 1.97877
1.22911 0.98066 0.92672 1.02400 0.90196 1.22071 1.01724 1.01770
0.94449 1.21650 0.94139 1.05459 0.94401 1.21172 0.81590 0.78183
0.89840 1.90731 1.53372 1.46593 1.53388 1.47945 1.07437 1.61676
1.16736 1.22014 0.92983 0.99411 0.92828 1.21718 0.96690 0.93508
0.84701 0.89194 1.22806 0.95334 0.98546 0.99461 1.23251 1.00540
0.88085 0.96877 1.64617 1.19592 1.10139 1.28525 1.22116 0.92791
1.02033 0.91887 1.20771 0.88642 0.84842 0.81937 1.90492 1.69397
1.39823 1.48951 1.42029 1.19006 1.42851 1.19333 1.18995 0.96095
1.25309 1.05109 0.92454 1.26088 0.96080 0.99846 0.99333 1.69802
1.16052 1.44996 1.26554 0.85391 0.79058 0.78766 0.78492 1.18386
1.19998 1.15431 1.23300 0.87148 0.99205 1.00032 0.90730 0.88955
0.87912 0.89519 0.90832 0.91983 0.84182 0.86857 0.92072 0.87994
0.90481 0.90766 0.89826 0.89996 0.95195 0.90542 0.86012 0.77580
0.91176 0.92340 0.88274
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.40 10.45 113.37 1.19 -0.21 16
2 S -0.31 -6.11 20.24 -56.49 -1.14 -7.25 16
3 C -0.03 -0.42 2.44 30.59 0.07 -0.35 16
4 H 0.08 1.28 7.95 -2.39 -0.02 1.27 16
5 C -0.14 -1.01 9.10 71.98 0.66 -0.35 16
6 C -0.12 -1.34 3.73 29.85 0.11 -1.23 16
7 C 0.50 10.14 7.39 87.66 0.65 10.79 16
8 O -0.56 -16.01 14.15 -3.05 -0.04 -16.06 16
9 N -0.61 -11.34 2.77 -817.66 -2.27 -13.61 16
10 C 0.07 0.89 8.84 127.77 1.13 2.02 16
11 C 0.14 3.22 3.39 45.87 0.16 3.37 16
12 H 0.09 2.40 6.97 -2.39 -0.02 2.39 16
13 C -0.12 -3.15 6.65 31.80 0.21 -2.94 16
14 C 0.04 1.32 5.30 86.65 0.46 1.78 16
15 N -0.50 -15.00 5.26 -887.57 -4.67 -19.67 16
16 C 0.04 1.33 5.52 85.56 0.47 1.80 16
17 C 0.45 20.08 7.49 87.66 0.66 20.74 16
18 O -0.60 -32.30 13.10 -3.07 -0.04 -32.34 16
19 N -0.59 -27.69 5.09 -306.98 -1.56 -29.25 16
20 C -0.33 -18.98 10.16 84.04 0.85 -18.12 16
21 H 0.06 3.97 7.39 -2.91 -0.02 3.95 16
22 C -0.01 -0.82 5.50 84.92 0.47 -0.35 16
23 N -0.93 -56.19 13.96 21.66 0.30 -55.89 16
24 Si 0.96 38.77 27.74 68.60 1.90 40.68 16
25 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16
26 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16
27 H -0.23 -7.82 6.52 99.48 0.65 -7.17 16
28 C 0.03 0.71 5.85 86.45 0.51 1.22 16
29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16
30 H 0.09 0.81 7.14 -2.39 -0.02 0.79 16
31 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16
32 H 0.09 0.31 8.14 -2.38 -0.02 0.29 16
33 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16
34 H 0.06 0.43 6.92 -2.39 -0.02 0.41 16
35 H 0.14 0.69 7.40 -2.39 -0.02 0.67 16
36 H 0.11 1.11 8.11 -2.39 -0.02 1.09 16
37 H 0.06 0.76 7.87 -2.39 -0.02 0.74 16
38 H 0.10 0.61 6.44 -2.39 -0.02 0.60 16
39 H 0.08 1.20 6.97 -2.39 -0.02 1.18 16
40 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16
41 H 0.08 2.07 6.84 -2.39 -0.02 2.05 16
42 H 0.08 3.37 5.97 -2.38 -0.01 3.36 16
43 H 0.03 1.01 8.02 -2.39 -0.02 0.99 16
44 H 0.08 2.03 7.81 -2.38 -0.02 2.01 16
45 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16
46 H 0.39 15.16 5.76 -92.71 -0.53 14.62 16
47 H 0.28 15.35 8.31 -92.70 -0.77 14.58 16
48 H 0.06 1.24 7.57 -2.39 -0.02 1.22 16
49 H 0.10 1.93 7.12 -2.39 -0.02 1.92 16
Total: -1.00 -80.70 394.27 0.42 -80.28
By element:
Atomic # 1 Polarization: 34.59 SS G_CDS: 0.36 Total: 34.95 kcal
Atomic # 6 Polarization: 10.58 SS G_CDS: 7.58 Total: 18.16 kcal
Atomic # 7 Polarization: -110.22 SS G_CDS: -8.20 Total: -118.42 kcal
Atomic # 8 Polarization: -48.31 SS G_CDS: -0.08 Total: -48.39 kcal
Atomic # 14 Polarization: 38.77 SS G_CDS: 1.90 Total: 40.68 kcal
Atomic # 16 Polarization: -6.11 SS G_CDS: -1.14 Total: -7.25 kcal
Total: -80.70 0.42 -80.28 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001715010639.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.173 kcal
(2) G-P(sol) polarization free energy of solvation -80.701 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.528 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.422 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.279 kcal
(6) G-S(sol) free energy of system = (1) + (5) -73.106 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds