Wall clock time and date at job start Sat Apr 11 2020 06:54:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08990 * 109.47197 * 2 1
4 4 N 1.46504 * 109.46496 * 120.00076 * 2 1 3
5 5 C 1.34781 * 119.99787 * 274.99427 * 4 2 1
6 6 O 1.21284 * 119.99583 * 0.02562 * 5 4 2
7 7 C 1.50693 * 120.00068 * 180.02562 * 5 4 2
8 8 F 1.39904 * 110.43334 * 310.70132 * 7 5 4
9 9 C 1.54810 * 110.48874 * 188.15963 * 7 5 4
10 10 C 1.55228 * 101.98525 * 220.51806 * 9 7 5
11 11 O 1.44384 * 103.56803 * 36.88130 * 10 9 7
12 12 C 1.43743 * 106.96970 * 320.00984 * 11 10 9
13 13 C 1.53004 * 109.46896 * 239.99327 * 2 1 3
14 14 C 1.53513 * 114.16692 * 174.87802 * 13 2 1
15 15 N 1.47481 * 87.92943 * 220.33181 * 14 13 2
16 16 C 1.46901 * 110.99743 * 138.70711 * 15 14 13
17 17 C 1.50703 * 109.47229 * 170.00087 * 16 15 14
18 18 O 1.21299 * 119.99657 * 359.97438 * 17 16 15
19 19 N 1.34770 * 120.00381 * 179.72176 * 17 16 15
20 20 C 1.37096 * 120.00017 * 180.26823 * 19 17 16
21 21 H 1.07998 * 120.00210 * 0.02562 * 20 19 17
22 22 C 1.38958 * 119.99804 * 179.97438 * 20 19 17
23 23 N 1.31410 * 119.99937 * 0.02562 * 22 20 19
24 24 Si 1.86794 * 119.99897 * 180.02562 * 22 20 19
25 25 H 1.48496 * 109.47377 * 89.99957 * 24 22 20
26 26 H 1.48501 * 109.47328 * 210.00181 * 24 22 20
27 27 H 1.48505 * 109.47234 * 330.00049 * 24 22 20
28 28 C 1.47473 * 87.83454 * 27.01163 * 15 14 13
29 29 H 1.08995 * 109.47447 * 184.93908 * 1 2 3
30 30 H 1.09002 * 109.47153 * 304.94731 * 1 2 3
31 31 H 1.09001 * 109.46685 * 64.94144 * 1 2 3
32 32 H 0.97000 * 120.00605 * 94.99909 * 4 2 1
33 33 H 1.09003 * 110.90571 * 338.63235 * 9 7 5
34 34 H 1.08997 * 110.90997 * 102.24703 * 9 7 5
35 35 H 1.08996 * 110.52145 * 278.37829 * 10 9 7
36 36 H 1.09002 * 110.77996 * 155.49615 * 10 9 7
37 37 H 1.09000 * 109.88300 * 267.08795 * 12 11 10
38 38 H 1.09002 * 110.00304 * 146.01333 * 12 11 10
39 39 H 1.09000 * 113.38427 * 307.95377 * 13 2 1
40 40 H 1.09004 * 113.47530 * 105.56361 * 14 13 2
41 41 H 1.09001 * 113.53012 * 335.10428 * 14 13 2
42 42 H 1.09002 * 109.47475 * 49.99504 * 16 15 14
43 43 H 1.09005 * 109.46616 * 289.99373 * 16 15 14
44 44 H 0.96997 * 119.99990 * 0.27716 * 19 17 16
45 45 H 0.97000 * 119.99680 * 180.02562 * 23 22 20
46 46 H 1.08996 * 113.47737 * 87.76121 * 28 15 14
47 47 H 1.09006 * 113.47387 * 218.22293 * 28 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 7 2.0182 -0.6907 1.1962
5 6 2.1469 -0.0182 2.3572
6 8 1.8582 1.1585 2.4116
7 6 2.6496 -0.7285 3.5876
8 9 1.9496 -1.9241 3.7817
9 6 2.5190 0.1840 4.8313
10 6 3.8448 -0.1062 5.5847
11 8 4.8102 -0.2643 4.5228
12 6 4.1619 -1.0014 3.4728
13 6 2.0400 -0.7214 -1.2492
14 6 3.5647 -0.6770 -1.4222
15 7 3.3412 -0.4652 -2.8645
16 6 4.2689 0.5407 -3.3989
17 6 4.1830 0.5544 -4.9034
18 8 3.4239 -0.2000 -5.4744
19 7 4.9457 1.4084 -5.6142
20 6 4.8635 1.4246 -6.9826
21 1 4.1872 0.7533 -7.4910
22 6 5.6496 2.3055 -7.7154
23 7 6.4721 3.1226 -7.0968
24 14 5.5371 2.3281 -9.5798
25 1 4.4948 3.2982 -10.0012
26 1 6.8478 2.7310 -10.1500
27 1 5.1794 0.9729 -10.0707
28 6 2.0438 0.1439 -2.5171
29 1 -0.3634 -1.0238 0.0885
30 1 -0.3633 0.5887 0.8424
31 1 -0.3633 0.4353 -0.9310
32 1 2.2489 -1.6318 1.1528
33 1 2.4591 1.2326 4.5399
34 1 1.6565 -0.1009 5.4339
35 1 3.7606 -1.0239 6.1667
36 1 4.1154 0.7313 6.2278
37 1 4.3564 -2.0672 3.5934
38 1 4.5264 -0.6660 2.5018
39 1 1.6040 -1.7111 -1.3855
40 1 4.0554 -1.6229 -1.1931
41 1 4.0343 0.1725 -0.9263
42 1 5.2863 0.2944 -3.0952
43 1 4.0017 1.5237 -3.0108
44 1 5.5530 2.0114 -5.1576
45 1 7.0206 3.7377 -7.6084
46 1 2.1066 1.2128 -2.3132
47 1 1.2456 -0.1063 -3.2160
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001717557246.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:54:49
Heat of formation + Delta-G solvation = -149.749814 kcal
Electronic energy + Delta-G solvation = -30222.511376 eV
Core-core repulsion = 25741.024690 eV
Total energy + Delta-G solvation = -4481.486687 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.174 amu
Computer time = 1.37 seconds
Orbital eigenvalues (eV)
-49.14260 -41.79875 -40.97875 -39.80193 -39.42776 -36.59670 -35.91612 -33.36786
-33.15277 -32.45419 -30.92080 -30.04536 -27.50326 -26.92643 -25.86711 -24.98931
-23.82026 -22.51369 -21.53616 -21.02394 -20.71993 -19.92003 -19.15417 -18.09448
-17.84369 -17.69422 -17.12212 -16.75177 -16.60903 -16.43722 -16.24780 -16.01309
-15.77304 -15.72759 -15.56775 -15.24796 -14.93777 -14.79397 -14.26046 -14.16363
-14.09473 -13.67467 -13.53450 -13.46980 -13.32696 -13.04207 -12.93379 -12.73643
-12.63484 -12.48165 -12.42752 -12.15364 -12.01329 -11.97851 -11.88872 -11.54060
-11.49089 -11.14480 -10.76567 -10.41295 -10.30597 -10.02375 -9.72800 -8.47681
-5.96585 1.18373 1.36966 1.40441 1.53498 1.71996 2.04431 2.27777
2.68366 2.78403 2.80062 3.11736 3.17922 3.24616 3.36628 3.49097
3.64975 3.71061 3.89776 4.04689 4.12696 4.14166 4.16665 4.28816
4.36435 4.42595 4.44981 4.47431 4.51586 4.56956 4.67403 4.71476
4.74201 4.75060 4.80930 4.91830 4.94089 5.13650 5.25703 5.35622
5.37839 5.40243 5.62186 5.89009 6.07588 6.26972 6.59506 6.91238
7.11976 7.55338 8.11692 8.69848
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.020902 B = 0.001954 C = 0.001867
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1339.235820 B =14324.172386 C =14994.564110
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.159 4.159
2 C 0.159 3.841
3 H 0.077 0.923
4 N -0.698 5.698
5 C 0.509 3.491
6 O -0.551 6.551
7 C 0.072 3.928
8 F -0.182 7.182
9 C -0.167 4.167
10 C 0.045 3.955
11 O -0.386 6.386
12 C 0.036 3.964
13 C -0.100 4.100
14 C 0.006 3.994
15 N -0.473 5.473
16 C 0.022 3.978
17 C 0.442 3.558
18 O -0.618 6.618
19 N -0.577 5.577
20 C -0.333 4.333
21 H 0.078 0.922
22 C -0.015 4.015
23 N -0.921 5.921
24 Si 0.994 3.006
25 H -0.270 1.270
26 H -0.270 1.270
27 H -0.273 1.273
28 C 0.009 3.991
29 H 0.073 0.927
30 H 0.048 0.952
31 H 0.073 0.927
32 H 0.418 0.582
33 H 0.099 0.901
34 H 0.113 0.887
35 H 0.085 0.915
36 H 0.118 0.882
37 H 0.105 0.895
38 H 0.105 0.895
39 H 0.123 0.877
40 H 0.102 0.898
41 H 0.077 0.923
42 H 0.107 0.893
43 H 0.079 0.921
44 H 0.395 0.605
45 H 0.278 0.722
46 H 0.074 0.926
47 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.983 -7.821 27.755 29.669
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.217 4.217
2 C 0.055 3.945
3 H 0.095 0.905
4 N -0.349 5.349
5 C 0.293 3.707
6 O -0.429 6.429
7 C 0.050 3.950
8 F -0.163 7.163
9 C -0.205 4.205
10 C -0.031 4.031
11 O -0.305 6.305
12 C -0.042 4.042
13 C -0.119 4.119
14 C -0.122 4.122
15 N -0.195 5.195
16 C -0.110 4.110
17 C 0.229 3.771
18 O -0.504 6.504
19 N -0.214 5.214
20 C -0.463 4.463
21 H 0.096 0.904
22 C -0.214 4.214
23 N -0.562 5.562
24 Si 0.817 3.183
25 H -0.196 1.196
26 H -0.195 1.195
27 H -0.198 1.198
28 C -0.121 4.121
29 H 0.092 0.908
30 H 0.067 0.933
31 H 0.092 0.908
32 H 0.255 0.745
33 H 0.118 0.882
34 H 0.132 0.868
35 H 0.104 0.896
36 H 0.136 0.864
37 H 0.123 0.877
38 H 0.123 0.877
39 H 0.141 0.859
40 H 0.121 0.879
41 H 0.095 0.905
42 H 0.125 0.875
43 H 0.097 0.903
44 H 0.229 0.771
45 H 0.087 0.913
46 H 0.092 0.908
47 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -7.287 -7.847 26.816 28.875
hybrid contribution 0.171 0.749 -0.565 0.954
sum -7.115 -7.099 26.250 28.109
Atomic orbital electron populations
1.22105 0.94004 1.03090 1.02504 1.20920 0.94911 0.96283 0.82425
0.90518 1.45922 1.65523 1.14858 1.08623 1.20614 0.77763 0.87266
0.85103 1.90741 1.50209 1.16956 1.84994 1.22508 0.94127 0.82670
0.95675 1.92953 1.80488 1.46764 1.96047 1.23766 1.01476 1.01331
0.93965 1.23884 0.85361 1.03707 0.90125 1.88944 1.36955 1.76157
1.28446 1.23841 0.86916 0.99560 0.93867 1.22892 0.95997 1.00803
0.92226 1.23947 0.96608 1.03490 0.88167 1.68779 1.02815 1.33109
1.14822 1.22382 1.00178 0.96656 0.91783 1.20785 0.83206 0.82720
0.90355 1.90484 1.42671 1.44170 1.73067 1.41964 1.37990 1.34824
1.06654 1.19652 1.23353 1.20502 0.82755 0.90423 1.26057 0.95212
0.95115 1.05024 1.69673 1.25455 1.22845 1.38258 0.84921 0.78063
0.78582 0.76734 1.19593 1.19462 1.19785 1.23881 0.94063 0.97919
0.96201 0.90844 0.93264 0.90777 0.74511 0.88238 0.86849 0.89642
0.86362 0.87672 0.87672 0.85920 0.87936 0.90494 0.87508 0.90335
0.77082 0.91297 0.90834 0.90826
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.52 9.47 71.98 0.68 -1.84 16
2 C 0.16 2.61 2.34 44.99 0.11 2.71 16
3 H 0.08 1.57 7.44 -2.39 -0.02 1.55 16
4 N -0.70 -9.56 4.94 -442.53 -2.19 -11.75 16
5 C 0.51 8.99 6.62 87.65 0.58 9.57 16
6 O -0.55 -13.82 15.09 -3.04 -0.05 -13.87 16
7 C 0.07 0.98 1.55 -10.55 -0.02 0.96 16
8 F -0.18 -2.42 16.82 44.97 0.76 -1.66 16
9 C -0.17 -2.09 6.40 31.98 0.20 -1.89 16
10 C 0.04 0.46 7.72 72.75 0.56 1.03 16
11 O -0.39 -6.14 11.52 -148.98 -1.72 -7.86 16
12 C 0.04 0.43 7.22 72.35 0.52 0.96 16
13 C -0.10 -1.76 3.49 -10.45 -0.04 -1.79 16
14 C 0.01 0.13 7.14 83.57 0.60 0.72 16
15 N -0.47 -14.60 5.82 -932.57 -5.43 -20.03 16
16 C 0.02 0.75 5.30 85.56 0.45 1.21 16
17 C 0.44 21.56 7.85 87.66 0.69 22.25 16
18 O -0.62 -35.29 16.01 -3.09 -0.05 -35.34 16
19 N -0.58 -30.22 5.29 -306.98 -1.62 -31.84 16
20 C -0.33 -19.25 9.68 84.04 0.81 -18.44 16
21 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16
22 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16
23 N -0.92 -50.34 13.05 21.67 0.28 -50.05 16
24 Si 0.99 43.46 29.55 68.60 2.03 45.49 16
25 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16
26 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16
27 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16
28 C 0.01 0.23 7.26 83.57 0.61 0.84 16
29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16
30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16
31 H 0.07 1.17 8.13 -2.39 -0.02 1.15 16
32 H 0.42 3.71 8.59 -92.71 -0.80 2.91 16
33 H 0.10 1.61 6.80 -2.39 -0.02 1.60 16
34 H 0.11 1.08 8.12 -2.39 -0.02 1.06 16
35 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16
36 H 0.12 0.87 8.14 -2.39 -0.02 0.86 16
37 H 0.11 0.88 8.03 -2.39 -0.02 0.86 16
38 H 0.11 1.21 7.69 -2.39 -0.02 1.19 16
39 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16
40 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16
41 H 0.08 1.43 7.87 -2.39 -0.02 1.41 16
42 H 0.11 3.27 8.08 -2.39 -0.02 3.25 16
43 H 0.08 2.41 7.30 -2.38 -0.02 2.39 16
44 H 0.40 19.64 7.90 -92.71 -0.73 18.91 16
45 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16
46 H 0.07 1.84 7.28 -2.39 -0.02 1.82 16
47 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16
Total: -1.00 -75.84 392.63 -2.27 -78.11
By element:
Atomic # 1 Polarization: 33.35 SS G_CDS: -0.52 Total: 32.83 kcal
Atomic # 6 Polarization: 9.75 SS G_CDS: 6.23 Total: 15.97 kcal
Atomic # 7 Polarization: -104.72 SS G_CDS: -8.95 Total: -113.67 kcal
Atomic # 8 Polarization: -55.26 SS G_CDS: -1.81 Total: -57.07 kcal
Atomic # 9 Polarization: -2.42 SS G_CDS: 0.76 Total: -1.66 kcal
Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal
Total: -75.84 -2.27 -78.11 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001717557246.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -71.641 kcal
(2) G-P(sol) polarization free energy of solvation -75.838 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.479 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.270 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.109 kcal
(6) G-S(sol) free energy of system = (1) + (5) -149.750 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.37 seconds