Wall clock time and date at job start Sat Apr 11 2020 06:55:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09008 * 109.46701 * 2 1
4 4 N 1.46496 * 109.47252 * 119.99608 * 2 1 3
5 5 C 1.36943 * 119.99952 * 275.00451 * 4 2 1
6 6 H 1.07996 * 119.99955 * 359.97438 * 5 4 2
7 7 C 1.38814 * 119.99806 * 180.02562 * 5 4 2
8 8 N 1.31614 * 120.00177 * 359.97438 * 7 5 4
9 9 Si 1.86800 * 119.99916 * 179.97438 * 7 5 4
10 10 H 1.48507 * 109.46983 * 89.99896 * 9 7 5
11 11 H 1.48499 * 109.47211 * 209.99516 * 9 7 5
12 12 H 1.48493 * 109.47072 * 330.00101 * 9 7 5
13 13 C 1.52998 * 109.47628 * 240.00163 * 2 1 3
14 14 H 1.08998 * 109.70052 * 52.69757 * 13 2 1
15 15 C 1.52770 * 109.50466 * 292.58627 * 13 2 1
16 16 C 1.53044 * 109.38015 * 185.70628 * 15 13 2
17 17 C 1.53038 * 109.54007 * 61.23748 * 16 15 13
18 18 C 1.53187 * 109.31282 * 298.63648 * 17 16 15
19 19 N 1.46923 * 109.58934 * 173.06026 * 13 2 1
20 20 C 1.34776 * 120.62882 * 353.41534 * 19 13 2
21 21 O 1.21623 * 120.00364 * 8.32718 * 20 19 13
22 22 C 1.47169 * 119.99863 * 188.33158 * 20 19 13
23 23 C 1.35750 * 125.12986 * 187.10574 * 22 20 19
24 24 C 1.46424 * 106.14021 * 180.25828 * 23 22 20
25 25 N 1.32936 * 133.88613 * 180.02562 * 24 23 22
26 26 C 1.31442 * 121.38506 * 179.97438 * 25 24 23
27 27 C 1.38862 * 121.18195 * 359.95495 * 26 25 24
28 28 C 1.38215 * 119.70924 * 0.02562 * 27 26 25
29 29 C 1.39304 * 118.33686 * 359.97438 * 28 27 26
30 30 O 1.34580 * 133.42235 * 180.02562 * 29 28 27
31 31 H 1.09008 * 109.46817 * 176.67920 * 1 2 3
32 32 H 1.08997 * 109.47511 * 296.67682 * 1 2 3
33 33 H 1.08997 * 109.47214 * 56.68249 * 1 2 3
34 34 H 0.96998 * 120.00041 * 95.00609 * 4 2 1
35 35 H 0.97008 * 120.00029 * 180.02562 * 8 7 5
36 36 H 1.08998 * 109.56186 * 65.66868 * 15 13 2
37 37 H 1.08994 * 109.35833 * 305.61626 * 15 13 2
38 38 H 1.09004 * 109.45861 * 301.21728 * 16 15 13
39 39 H 1.08994 * 109.44455 * 181.25436 * 16 15 13
40 40 H 1.08996 * 109.49464 * 178.68137 * 17 16 15
41 41 H 1.08999 * 109.51985 * 58.60072 * 17 16 15
42 42 H 1.09007 * 109.58860 * 294.84603 * 18 17 16
43 43 H 1.09000 * 109.58646 * 174.41987 * 18 17 16
44 44 H 1.08003 * 126.93142 * 0.24222 * 23 22 20
45 45 H 1.08000 * 119.40752 * 179.97438 * 26 25 24
46 46 H 1.07995 * 120.14878 * 180.02562 * 27 26 25
47 47 H 1.07997 * 120.82985 * 179.97438 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0278 0.0000
4 7 2.0183 -0.6905 1.1962
5 6 2.1490 -0.0073 2.3758
6 1 1.8925 1.0407 2.4241
7 6 2.6123 -0.6615 3.5091
8 7 2.9254 -1.9385 3.4500
9 14 2.7913 0.2707 5.1180
10 1 1.5238 0.1794 5.8865
11 1 3.8962 -0.3224 5.9134
12 1 3.0959 1.6958 4.8331
13 6 2.0401 -0.7212 -1.2492
14 1 1.5763 -0.2911 -2.1369
15 6 1.6887 -2.2053 -1.1606
16 6 2.3221 -2.9484 -2.3392
17 6 3.8445 -2.8059 -2.2756
18 6 4.2195 -1.3244 -2.3803
19 7 3.4998 -0.5795 -1.3383
20 6 4.1664 0.2143 -0.4769
21 8 3.5865 0.7013 0.4748
22 6 5.5962 0.4920 -0.6881
23 6 6.3989 1.1590 0.1801
24 6 7.7237 1.2027 -0.4420
25 7 8.8965 1.7116 -0.0777
26 6 9.9570 1.6065 -0.8472
27 6 9.8943 0.9576 -2.0732
28 6 8.6983 0.4106 -2.4983
29 6 7.5846 0.5312 -1.6702
30 8 6.3056 0.1258 -1.7750
31 1 -0.3633 -1.0260 -0.0595
32 1 -0.3634 0.4614 0.9182
33 1 -0.3633 0.5645 -0.8587
34 1 2.2491 -1.6316 1.1527
35 1 3.2488 -2.3957 4.2421
36 1 0.6060 -2.3266 -1.1934
37 1 2.0727 -2.6123 -0.2253
38 1 1.9565 -2.5244 -3.2745
39 1 2.0536 -4.0035 -2.2893
40 1 4.2960 -3.3549 -3.1019
41 1 4.2086 -3.2074 -1.3299
42 1 3.9372 -0.9444 -3.3622
43 1 5.2938 -1.2084 -2.2363
44 1 6.1172 1.5739 1.1366
45 1 10.8940 2.0323 -0.5198
46 1 10.7761 0.8806 -2.6919
47 1 8.6289 -0.0977 -3.4487
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001731291695.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:55:37
Heat of formation + Delta-G solvation = 72.774257 kcal
Electronic energy + Delta-G solvation = -31570.417026 eV
Core-core repulsion = 27529.348932 eV
Total energy + Delta-G solvation = -4041.068094 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.168 amu
Computer time = 1.07 seconds
Orbital eigenvalues (eV)
-42.70856 -40.17642 -38.90224 -37.05692 -35.21719 -33.24605 -32.62187 -32.17745
-31.52080 -29.96039 -29.63700 -28.06381 -25.81642 -24.35479 -23.89744 -23.35142
-23.01453 -21.71673 -20.82125 -20.13791 -19.23152 -17.89833 -17.35091 -16.95478
-16.59391 -16.45817 -15.59497 -15.44478 -14.79696 -14.50887 -14.35094 -14.06839
-13.92140 -13.66406 -13.61423 -13.39717 -13.11125 -13.10402 -12.87432 -12.77240
-12.63819 -12.20248 -12.13851 -11.96853 -11.38444 -11.12095 -10.77192 -10.68363
-10.64645 -10.60545 -10.54354 -10.33183 -10.10507 -9.79500 -9.55723 -9.37566
-9.09171 -8.81999 -8.65814 -8.51554 -8.04221 -6.59816 -5.50432 -2.72862
0.47692 1.00472 1.88771 2.36608 3.18397 3.55922 3.58557 3.64212
3.66135 3.69704 3.96460 4.34450 4.56575 4.70670 4.79581 4.84508
4.91753 5.02746 5.06568 5.11592 5.28827 5.35649 5.49494 5.50371
5.62475 5.64873 5.69657 5.76080 5.80109 5.84811 5.99197 6.01979
6.07360 6.13292 6.21684 6.23137 6.27740 6.30526 6.41345 6.48073
6.58449 6.80721 6.86959 6.98737 7.02026 7.31868 7.73837 7.77573
7.99312 8.61814 8.71232 9.79840 10.35430 10.71650 11.73851
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.009580 B = 0.004730 C = 0.003491
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2922.060368 B = 5918.367801 C = 8018.491869
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C 0.168 3.832
3 H 0.077 0.923
4 N -0.703 5.703
5 C -0.181 4.181
6 H 0.066 0.934
7 C -0.027 4.027
8 N -0.946 5.946
9 Si 0.897 3.103
10 H -0.296 1.296
11 H -0.296 1.296
12 H -0.285 1.285
13 C 0.148 3.852
14 H 0.067 0.933
15 C -0.135 4.135
16 C -0.117 4.117
17 C -0.135 4.135
18 C 0.102 3.898
19 N -0.600 5.600
20 C 0.567 3.433
21 O -0.408 6.408
22 C 0.014 3.986
23 C -0.118 4.118
24 C 0.072 3.928
25 N -0.441 5.441
26 C 0.097 3.903
27 C -0.152 4.152
28 C -0.061 4.061
29 C 0.001 3.999
30 O -0.174 6.174
31 H 0.045 0.955
32 H 0.057 0.943
33 H 0.033 0.967
34 H 0.379 0.621
35 H 0.248 0.752
36 H 0.074 0.926
37 H 0.082 0.918
38 H 0.058 0.942
39 H 0.061 0.939
40 H 0.068 0.932
41 H 0.070 0.930
42 H 0.063 0.937
43 H 0.098 0.902
44 H 0.178 0.822
45 H 0.164 0.836
46 H 0.148 0.852
47 H 0.144 0.856
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.988 1.497 -18.967 21.043
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.230 4.230
2 C 0.058 3.942
3 H 0.095 0.905
4 N -0.345 5.345
5 C -0.313 4.313
6 H 0.084 0.916
7 C -0.220 4.220
8 N -0.598 5.598
9 Si 0.730 3.270
10 H -0.224 1.224
11 H -0.223 1.223
12 H -0.211 1.211
13 C 0.044 3.956
14 H 0.085 0.915
15 C -0.173 4.173
16 C -0.154 4.154
17 C -0.173 4.173
18 C -0.021 4.021
19 N -0.336 5.336
20 C 0.350 3.650
21 O -0.276 6.276
22 C -0.037 4.037
23 C -0.139 4.139
24 C -0.057 4.057
25 N -0.150 5.150
26 C -0.069 4.069
27 C -0.172 4.172
28 C -0.088 4.088
29 C -0.049 4.049
30 O -0.076 6.076
31 H 0.064 0.936
32 H 0.076 0.924
33 H 0.052 0.948
34 H 0.215 0.785
35 H 0.058 0.942
36 H 0.092 0.908
37 H 0.101 0.899
38 H 0.076 0.924
39 H 0.080 0.920
40 H 0.087 0.913
41 H 0.089 0.911
42 H 0.081 0.919
43 H 0.115 0.885
44 H 0.195 0.805
45 H 0.181 0.819
46 H 0.165 0.835
47 H 0.161 0.839
Dipole moment (debyes) X Y Z Total
from point charges 8.551 2.205 -17.672 19.755
hybrid contribution 0.441 -0.441 0.183 0.650
sum 8.993 1.765 -17.488 19.744
Atomic orbital electron populations
1.22571 0.99720 1.00477 1.00242 1.20688 0.90652 0.97357 0.85472
0.90506 1.42453 1.77258 1.09756 1.05080 1.19074 1.32631 0.93250
0.86336 0.91632 1.24560 1.03858 0.95996 0.97634 1.69635 1.53325
1.08634 1.28199 0.86296 0.76937 0.78939 0.84822 1.22404 1.22325
1.21061 1.21575 0.78042 0.96293 0.99641 0.91498 1.21944 1.00836
0.95080 0.99471 1.21509 0.94971 1.00394 0.98548 1.21913 0.96870
0.95893 1.02618 1.22006 0.97769 0.91505 0.90796 1.47695 1.07502
1.45854 1.32541 1.16987 0.82093 0.82534 0.83423 1.91286 1.62490
1.48878 1.24949 1.22953 0.93879 1.00594 0.86302 1.22533 0.88348
1.01652 1.01335 1.20724 0.93436 0.98847 0.92741 1.67041 0.97736
1.16688 1.33558 1.22808 0.96575 0.96761 0.90735 1.22001 0.97633
0.99325 0.98252 1.20445 0.88806 1.00251 0.99285 1.20763 0.85826
1.00332 0.97961 1.84282 1.18057 1.64891 1.40337 0.93614 0.92405
0.94797 0.78521 0.94216 0.90784 0.89917 0.92352 0.91989 0.91329
0.91131 0.91899 0.88473 0.80463 0.81898 0.83476 0.83857
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -3.04 9.35 37.16 0.35 -2.69 16
2 C 0.17 3.36 1.88 -67.93 -0.13 3.23 16
3 H 0.08 1.68 5.94 -52.04 -0.31 1.37 16
4 N -0.70 -17.38 3.63 -53.43 -0.19 -17.57 16
5 C -0.18 -5.11 7.94 -15.06 -0.12 -5.23 16
6 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16
7 C -0.03 -0.80 5.50 -17.43 -0.10 -0.90 16
8 N -0.95 -29.38 13.06 55.49 0.72 -28.66 16
9 Si 0.90 23.75 29.55 -169.99 -5.02 18.72 16
10 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16
11 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16
12 H -0.28 -7.42 7.11 56.52 0.40 -7.02 16
13 C 0.15 2.39 2.70 -67.82 -0.18 2.21 16
14 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16
15 C -0.13 -2.06 4.87 -26.83 -0.13 -2.19 16
16 C -0.12 -1.41 5.89 -26.69 -0.16 -1.56 16
17 C -0.13 -1.64 6.08 -26.62 -0.16 -1.80 16
18 C 0.10 1.32 6.06 -3.71 -0.02 1.30 16
19 N -0.60 -9.82 2.98 -166.83 -0.50 -10.31 16
20 C 0.57 10.86 7.39 -12.63 -0.09 10.76 16
21 O -0.41 -9.35 9.51 5.26 0.05 -9.30 16
22 C 0.01 0.25 6.72 -36.85 -0.25 0.00 16
23 C -0.12 -2.08 10.81 -37.18 -0.40 -2.48 16
24 C 0.07 1.16 7.52 -83.18 -0.63 0.54 16
25 N -0.44 -6.62 10.41 -9.87 -0.10 -6.72 16
26 C 0.10 1.02 11.17 -17.49 -0.20 0.83 16
27 C -0.15 -1.28 10.09 -39.36 -0.40 -1.68 16
28 C -0.06 -0.61 10.19 -39.19 -0.40 -1.01 16
29 C 0.00 0.02 7.42 -38.27 -0.28 -0.27 16
30 O -0.17 -2.56 7.13 3.38 0.02 -2.54 16
31 H 0.04 0.79 6.64 -51.92 -0.34 0.45 16
32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16
33 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16
34 H 0.38 10.00 5.55 -40.82 -0.23 9.77 16
35 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16
36 H 0.07 1.06 6.85 -51.93 -0.36 0.71 16
37 H 0.08 1.57 5.97 -51.93 -0.31 1.26 16
38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16
39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16
41 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16
42 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16
43 H 0.10 1.29 4.29 -53.01 -0.23 1.07 16
44 H 0.18 3.24 8.06 -52.48 -0.42 2.82 16
45 H 0.16 1.15 8.06 -52.49 -0.42 0.72 16
46 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16
47 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16
LS Contribution 367.91 15.07 5.54 5.54
Total: -1.00 -34.03 367.91 -9.16 -43.19
By element:
Atomic # 1 Polarization: 14.99 SS G_CDS: -6.39 Total: 8.60 kcal
Atomic # 6 Polarization: 2.34 SS G_CDS: -3.30 Total: -0.96 kcal
Atomic # 7 Polarization: -63.19 SS G_CDS: -0.07 Total: -63.26 kcal
Atomic # 8 Polarization: -11.91 SS G_CDS: 0.07 Total: -11.84 kcal
Atomic # 14 Polarization: 23.75 SS G_CDS: -5.02 Total: 18.72 kcal
Total LS contribution 5.54 Total: 5.54 kcal
Total: -34.03 -9.16 -43.19 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001731291695.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 115.961 kcal
(2) G-P(sol) polarization free energy of solvation -34.025 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.936 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.187 kcal
(6) G-S(sol) free energy of system = (1) + (5) 72.774 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.07 seconds