Wall clock time and date at job start Sat Apr 11 2020 06:55:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09008 * 109.46701 * 2 1
4 4 N 1.46496 * 109.47252 * 119.99608 * 2 1 3
5 5 C 1.36943 * 119.99952 * 275.00451 * 4 2 1
6 6 H 1.07996 * 119.99955 * 359.97438 * 5 4 2
7 7 C 1.38814 * 119.99806 * 180.02562 * 5 4 2
8 8 N 1.31614 * 120.00177 * 359.97438 * 7 5 4
9 9 Si 1.86800 * 119.99916 * 179.97438 * 7 5 4
10 10 H 1.48507 * 109.46983 * 89.99896 * 9 7 5
11 11 H 1.48499 * 109.47211 * 209.99516 * 9 7 5
12 12 H 1.48493 * 109.47072 * 330.00101 * 9 7 5
13 13 C 1.52998 * 109.47628 * 240.00163 * 2 1 3
14 14 H 1.08998 * 109.70052 * 52.69757 * 13 2 1
15 15 C 1.52770 * 109.50466 * 292.58627 * 13 2 1
16 16 C 1.53044 * 109.38015 * 185.70628 * 15 13 2
17 17 C 1.53038 * 109.54007 * 61.23748 * 16 15 13
18 18 C 1.53187 * 109.31282 * 298.63648 * 17 16 15
19 19 N 1.46923 * 109.58934 * 173.06026 * 13 2 1
20 20 C 1.34776 * 120.62882 * 353.41534 * 19 13 2
21 21 O 1.21623 * 120.00364 * 8.32718 * 20 19 13
22 22 C 1.47169 * 119.99863 * 188.33158 * 20 19 13
23 23 C 1.35750 * 125.12986 * 187.10574 * 22 20 19
24 24 C 1.46424 * 106.14021 * 180.25828 * 23 22 20
25 25 N 1.32936 * 133.88613 * 180.02562 * 24 23 22
26 26 C 1.31442 * 121.38506 * 179.97438 * 25 24 23
27 27 C 1.38862 * 121.18195 * 359.95495 * 26 25 24
28 28 C 1.38215 * 119.70924 * 0.02562 * 27 26 25
29 29 C 1.39304 * 118.33686 * 359.97438 * 28 27 26
30 30 O 1.34580 * 133.42235 * 180.02562 * 29 28 27
31 31 H 1.09008 * 109.46817 * 176.67920 * 1 2 3
32 32 H 1.08997 * 109.47511 * 296.67682 * 1 2 3
33 33 H 1.08997 * 109.47214 * 56.68249 * 1 2 3
34 34 H 0.96998 * 120.00041 * 95.00609 * 4 2 1
35 35 H 0.97008 * 120.00029 * 180.02562 * 8 7 5
36 36 H 1.08998 * 109.56186 * 65.66868 * 15 13 2
37 37 H 1.08994 * 109.35833 * 305.61626 * 15 13 2
38 38 H 1.09004 * 109.45861 * 301.21728 * 16 15 13
39 39 H 1.08994 * 109.44455 * 181.25436 * 16 15 13
40 40 H 1.08996 * 109.49464 * 178.68137 * 17 16 15
41 41 H 1.08999 * 109.51985 * 58.60072 * 17 16 15
42 42 H 1.09007 * 109.58860 * 294.84603 * 18 17 16
43 43 H 1.09000 * 109.58646 * 174.41987 * 18 17 16
44 44 H 1.08003 * 126.93142 * 0.24222 * 23 22 20
45 45 H 1.08000 * 119.40752 * 179.97438 * 26 25 24
46 46 H 1.07995 * 120.14878 * 180.02562 * 27 26 25
47 47 H 1.07997 * 120.82985 * 179.97438 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0278 0.0000
4 7 2.0183 -0.6905 1.1962
5 6 2.1490 -0.0073 2.3758
6 1 1.8925 1.0407 2.4241
7 6 2.6123 -0.6615 3.5091
8 7 2.9254 -1.9385 3.4500
9 14 2.7913 0.2707 5.1180
10 1 1.5238 0.1794 5.8865
11 1 3.8962 -0.3224 5.9134
12 1 3.0959 1.6958 4.8331
13 6 2.0401 -0.7212 -1.2492
14 1 1.5763 -0.2911 -2.1369
15 6 1.6887 -2.2053 -1.1606
16 6 2.3221 -2.9484 -2.3392
17 6 3.8445 -2.8059 -2.2756
18 6 4.2195 -1.3244 -2.3803
19 7 3.4998 -0.5795 -1.3383
20 6 4.1664 0.2143 -0.4769
21 8 3.5865 0.7013 0.4748
22 6 5.5962 0.4920 -0.6881
23 6 6.3989 1.1590 0.1801
24 6 7.7237 1.2027 -0.4420
25 7 8.8965 1.7116 -0.0777
26 6 9.9570 1.6065 -0.8472
27 6 9.8943 0.9576 -2.0732
28 6 8.6983 0.4106 -2.4983
29 6 7.5846 0.5312 -1.6702
30 8 6.3056 0.1258 -1.7750
31 1 -0.3633 -1.0260 -0.0595
32 1 -0.3634 0.4614 0.9182
33 1 -0.3633 0.5645 -0.8587
34 1 2.2491 -1.6316 1.1527
35 1 3.2488 -2.3957 4.2421
36 1 0.6060 -2.3266 -1.1934
37 1 2.0727 -2.6123 -0.2253
38 1 1.9565 -2.5244 -3.2745
39 1 2.0536 -4.0035 -2.2893
40 1 4.2960 -3.3549 -3.1019
41 1 4.2086 -3.2074 -1.3299
42 1 3.9372 -0.9444 -3.3622
43 1 5.2938 -1.2084 -2.2363
44 1 6.1172 1.5739 1.1366
45 1 10.8940 2.0323 -0.5198
46 1 10.7761 0.8806 -2.6919
47 1 8.6289 -0.0977 -3.4487
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001731291695.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:55:36
Heat of formation + Delta-G solvation = 50.038724 kcal
Electronic energy + Delta-G solvation = -31571.402913 eV
Core-core repulsion = 27529.348932 eV
Total energy + Delta-G solvation = -4042.053981 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.168 amu
Computer time = 1.29 seconds
Orbital eigenvalues (eV)
-43.82127 -41.52638 -39.88895 -38.41968 -36.86959 -34.26237 -34.14545 -33.80579
-32.58797 -31.34450 -30.95316 -29.71979 -27.03368 -25.81252 -25.41433 -24.52236
-24.27274 -22.88408 -22.01142 -21.54582 -20.49751 -19.14678 -18.96364 -18.43871
-17.74810 -17.36579 -17.05206 -16.59568 -16.37427 -16.04181 -15.73696 -15.49178
-15.29767 -15.03342 -14.72226 -14.55667 -14.41550 -14.21382 -14.11213 -13.97750
-13.86018 -13.64202 -13.49068 -13.31949 -13.02514 -12.80859 -12.63856 -12.36960
-12.14920 -11.93177 -11.73598 -11.64916 -11.55036 -11.36042 -11.27938 -10.83001
-10.49828 -10.21308 -10.12957 -9.73445 -9.42809 -8.64663 -7.78194 -4.96364
-0.57213 0.09002 0.73151 1.20153 1.41719 1.43706 1.51343 1.92843
2.24338 2.65088 2.69153 2.90238 3.34027 3.54544 3.56276 3.76776
3.87830 3.93212 3.96511 4.03445 4.09023 4.19451 4.25855 4.31922
4.37297 4.41238 4.53457 4.60285 4.64243 4.77540 4.84860 4.93679
4.94543 4.98173 5.00766 5.04751 5.09422 5.13760 5.27063 5.29033
5.32877 5.44858 5.51719 5.58785 5.66937 5.78773 5.86521 6.42536
6.45240 6.82563 7.22497 7.52596 8.30609 8.54131 9.46950
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.009580 B = 0.004730 C = 0.003491
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2922.060368 B = 5918.367801 C = 8018.491869
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.159 4.159
2 C 0.162 3.838
3 H 0.056 0.944
4 N -0.706 5.706
5 C -0.157 4.157
6 H 0.055 0.945
7 C -0.093 4.093
8 N -0.980 5.980
9 Si 0.950 3.050
10 H -0.290 1.290
11 H -0.304 1.304
12 H -0.283 1.283
13 C 0.150 3.850
14 H 0.105 0.895
15 C -0.130 4.130
16 C -0.109 4.109
17 C -0.131 4.131
18 C 0.097 3.903
19 N -0.596 5.596
20 C 0.561 3.439
21 O -0.466 6.466
22 C 0.004 3.996
23 C -0.142 4.142
24 C 0.036 3.964
25 N -0.485 5.485
26 C 0.097 3.903
27 C -0.125 4.125
28 C -0.056 4.056
29 C -0.011 4.011
30 O -0.162 6.162
31 H 0.052 0.948
32 H 0.030 0.970
33 H 0.071 0.929
34 H 0.369 0.631
35 H 0.239 0.761
36 H 0.085 0.915
37 H 0.036 0.964
38 H 0.089 0.911
39 H 0.072 0.928
40 H 0.105 0.895
41 H 0.036 0.964
42 H 0.097 0.903
43 H 0.094 0.906
44 H 0.151 0.849
45 H 0.199 0.801
46 H 0.203 0.797
47 H 0.185 0.815
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.699 1.102 -23.717 26.042
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C 0.053 3.947
3 H 0.073 0.927
4 N -0.347 5.347
5 C -0.291 4.291
6 H 0.073 0.927
7 C -0.282 4.282
8 N -0.636 5.636
9 Si 0.783 3.217
10 H -0.218 1.218
11 H -0.231 1.231
12 H -0.209 1.209
13 C 0.047 3.953
14 H 0.123 0.877
15 C -0.168 4.168
16 C -0.146 4.146
17 C -0.169 4.169
18 C -0.024 4.024
19 N -0.330 5.330
20 C 0.345 3.655
21 O -0.339 6.339
22 C -0.047 4.047
23 C -0.164 4.164
24 C -0.092 4.092
25 N -0.196 5.196
26 C -0.069 4.069
27 C -0.144 4.144
28 C -0.082 4.082
29 C -0.060 4.060
30 O -0.063 6.063
31 H 0.071 0.929
32 H 0.049 0.951
33 H 0.090 0.910
34 H 0.204 0.796
35 H 0.048 0.952
36 H 0.104 0.896
37 H 0.055 0.945
38 H 0.108 0.892
39 H 0.091 0.909
40 H 0.123 0.877
41 H 0.055 0.945
42 H 0.116 0.884
43 H 0.111 0.889
44 H 0.169 0.831
45 H 0.216 0.784
46 H 0.220 0.780
47 H 0.202 0.798
Dipole moment (debyes) X Y Z Total
from point charges 10.225 1.818 -22.497 24.779
hybrid contribution 0.131 -0.217 1.469 1.490
sum 10.356 1.601 -21.029 23.495
Atomic orbital electron populations
1.22401 0.97713 1.01263 1.00579 1.20823 0.91826 0.96407 0.85596
0.92682 1.42544 1.77147 1.09247 1.05716 1.19228 1.29605 0.92663
0.87565 0.92664 1.25135 1.05780 0.96890 1.00404 1.69778 1.55789
1.09814 1.28192 0.85423 0.76616 0.77825 0.81874 1.21807 1.23127
1.20868 1.21598 0.78152 0.96780 0.98756 0.87747 1.21880 1.01634
0.94362 0.98971 1.21493 0.94355 1.00752 0.98041 1.21912 0.97334
0.95373 1.02291 1.22297 0.97357 0.91723 0.90975 1.47861 1.07791
1.44977 1.32418 1.17279 0.82754 0.82257 0.83186 1.91233 1.64001
1.51349 1.27316 1.22421 0.93360 1.01547 0.87417 1.22491 0.90624
1.02383 1.00904 1.20597 0.93240 1.01309 0.94023 1.67006 0.98432
1.18368 1.35749 1.23640 0.96382 0.95736 0.91156 1.22644 0.98676
0.95873 0.97246 1.21098 0.87437 0.99652 1.00017 1.21269 0.86166
1.00461 0.98144 1.84239 1.18563 1.64659 1.38839 0.92940 0.95071
0.91008 0.79642 0.95180 0.89639 0.94513 0.89211 0.90927 0.87692
0.94550 0.88446 0.88865 0.83146 0.78403 0.78019 0.79781
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -5.65 9.35 71.98 0.67 -4.98 16
2 C 0.16 6.62 1.88 44.99 0.08 6.71 16
3 H 0.06 2.54 5.94 -4.23 -0.03 2.51 16
4 N -0.71 -36.83 3.63 -322.94 -1.17 -38.01 16
5 C -0.16 -9.40 7.94 84.03 0.67 -8.73 16
6 H 0.06 3.35 7.83 -2.91 -0.02 3.33 16
7 C -0.09 -5.78 5.50 84.86 0.47 -5.31 16
8 N -0.98 -64.32 13.06 21.65 0.28 -64.04 16
9 Si 0.95 51.56 29.55 68.60 2.03 53.59 16
10 H -0.29 -15.29 7.11 99.48 0.71 -14.59 16
11 H -0.30 -16.71 7.11 99.48 0.71 -16.01 16
12 H -0.28 -15.02 7.11 99.48 0.71 -14.31 16
13 C 0.15 4.71 2.70 44.83 0.12 4.83 16
14 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16
15 C -0.13 -3.82 4.87 30.53 0.15 -3.68 16
16 C -0.11 -2.28 5.89 30.62 0.18 -2.10 16
17 C -0.13 -2.88 6.08 30.67 0.19 -2.69 16
18 C 0.10 2.31 6.06 86.36 0.52 2.84 16
19 N -0.60 -19.47 2.98 -799.97 -2.38 -21.85 16
20 C 0.56 22.82 7.39 86.59 0.64 23.46 16
21 O -0.47 -23.17 9.51 -4.10 -0.04 -23.21 16
22 C 0.00 0.16 6.72 24.04 0.16 0.33 16
23 C -0.14 -5.58 10.81 23.83 0.26 -5.32 16
24 C 0.04 1.21 7.52 41.70 0.31 1.52 16
25 N -0.49 -14.61 10.41 -185.13 -1.93 -16.54 16
26 C 0.10 1.75 11.17 84.90 0.95 2.70 16
27 C -0.13 -1.47 10.09 22.41 0.23 -1.24 16
28 C -0.06 -0.88 10.19 22.52 0.23 -0.65 16
29 C -0.01 -0.28 7.42 23.12 0.17 -0.11 16
30 O -0.16 -4.74 7.13 -10.83 -0.08 -4.82 16
31 H 0.05 1.77 6.64 -2.38 -0.02 1.76 16
32 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16
33 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16
34 H 0.37 20.69 5.55 -92.71 -0.51 20.17 16
35 H 0.24 15.49 8.31 -92.70 -0.77 14.72 16
36 H 0.09 2.29 6.85 -2.39 -0.02 2.27 16
37 H 0.04 1.44 5.97 -2.39 -0.01 1.42 16
38 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16
39 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16
40 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16
41 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16
42 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16
43 H 0.09 2.34 4.29 -19.57 -0.08 2.26 16
44 H 0.15 6.43 8.06 -2.91 -0.02 6.41 16
45 H 0.20 1.98 8.06 -2.91 -0.02 1.96 16
46 H 0.20 0.24 8.06 -2.91 -0.02 0.21 16
47 H 0.18 1.40 8.06 -2.91 -0.02 1.37 16
Total: -1.00 -84.11 367.91 3.12 -80.99
By element:
Atomic # 1 Polarization: 25.91 SS G_CDS: 0.41 Total: 26.32 kcal
Atomic # 6 Polarization: 1.56 SS G_CDS: 6.00 Total: 7.56 kcal
Atomic # 7 Polarization: -135.24 SS G_CDS: -5.20 Total: -140.43 kcal
Atomic # 8 Polarization: -27.91 SS G_CDS: -0.12 Total: -28.03 kcal
Atomic # 14 Polarization: 51.56 SS G_CDS: 2.03 Total: 53.59 kcal
Total: -84.11 3.12 -80.99 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001731291695.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 131.030 kcal
(2) G-P(sol) polarization free energy of solvation -84.112 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.919 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.120 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.992 kcal
(6) G-S(sol) free energy of system = (1) + (5) 50.039 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.29 seconds