Wall clock time and date at job start Sat Apr 11 2020 06:55:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08999 * 109.47143 * 2 1
4 4 N 1.46499 * 109.47288 * 119.99576 * 2 1 3
5 5 C 1.36936 * 119.99990 * 275.00337 * 4 2 1
6 6 H 1.07991 * 120.00390 * 359.97438 * 5 4 2
7 7 C 1.38818 * 119.99772 * 179.97438 * 5 4 2
8 8 N 1.31620 * 119.99992 * 0.02562 * 7 5 4
9 9 Si 1.86793 * 120.00066 * 179.97438 * 7 5 4
10 10 H 1.48499 * 109.47009 * 0.02562 * 9 7 5
11 11 H 1.48506 * 109.47096 * 120.00136 * 9 7 5
12 12 H 1.48498 * 109.47521 * 240.00012 * 9 7 5
13 13 C 1.52997 * 109.47137 * 240.00120 * 2 1 3
14 14 C 1.53041 * 109.46015 * 180.02562 * 13 2 1
15 15 C 1.53193 * 109.31420 * 178.61181 * 14 13 2
16 16 N 1.46921 * 108.77704 * 54.63429 * 15 14 13
17 17 C 1.34776 * 120.63490 * 126.37022 * 16 15 14
18 18 O 1.21633 * 119.99659 * 352.42445 * 17 16 15
19 19 C 1.47172 * 120.00227 * 172.42497 * 17 16 15
20 20 C 1.35748 * 125.12834 * 172.23773 * 19 17 16
21 21 C 1.46418 * 106.13810 * 179.86359 * 20 19 17
22 22 N 1.32948 * 133.88880 * 180.14291 * 21 20 19
23 23 C 1.31435 * 121.38336 * 180.27434 * 22 21 20
24 24 C 1.38864 * 121.18395 * 359.97438 * 23 22 21
25 25 C 1.38204 * 119.71299 * 0.02562 * 24 23 22
26 26 C 1.39304 * 118.33339 * 359.97438 * 25 24 23
27 27 O 1.34589 * 133.42060 * 180.02562 * 26 25 24
28 28 C 1.46932 * 118.73477 * 306.39372 * 16 15 14
29 29 C 1.53039 * 109.46576 * 59.99796 * 13 2 1
30 30 H 1.08999 * 109.47143 * 179.97438 * 1 2 3
31 31 H 1.08998 * 109.46970 * 300.00642 * 1 2 3
32 32 H 1.09003 * 109.46928 * 60.00104 * 1 2 3
33 33 H 0.97001 * 119.99878 * 94.99811 * 4 2 1
34 34 H 0.96995 * 120.00253 * 179.97438 * 8 7 5
35 35 H 1.09005 * 109.44947 * 300.02592 * 13 2 1
36 36 H 1.08999 * 109.49581 * 298.56001 * 14 13 2
37 37 H 1.09006 * 109.50310 * 58.66013 * 14 13 2
38 38 H 1.09003 * 109.58704 * 294.84481 * 15 14 13
39 39 H 1.09002 * 109.70200 * 174.49038 * 15 14 13
40 40 H 1.07998 * 126.93375 * 359.97438 * 20 19 17
41 41 H 1.07999 * 119.40693 * 179.97438 * 23 22 21
42 42 H 1.08008 * 120.14282 * 179.97438 * 24 23 22
43 43 H 1.08000 * 120.83680 * 179.97438 * 25 24 23
44 44 H 1.09000 * 109.58294 * 293.81648 * 28 16 15
45 45 H 1.09000 * 109.70224 * 173.46634 * 28 16 15
46 46 H 1.08996 * 109.49357 * 301.34092 * 29 13 2
47 47 H 1.08999 * 109.49297 * 61.40335 * 29 13 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0184 -0.6905 1.1962
5 6 2.1491 -0.0073 2.3757
6 1 1.8926 1.0406 2.4241
7 6 2.6114 -0.6618 3.5093
8 7 2.9245 -1.9388 3.4502
9 14 2.7904 0.2702 5.1182
10 1 2.3764 1.6826 4.9207
11 1 1.9293 -0.3576 6.1524
12 1 4.2073 0.2265 5.5606
13 6 2.0400 -0.7212 -1.2492
14 6 3.5704 -0.7216 -1.2486
15 6 4.0774 -1.4745 -2.4827
16 7 3.4746 -0.8770 -3.6820
17 6 4.2479 -0.4573 -4.7029
18 8 5.4582 -0.4433 -4.5832
19 6 3.6279 -0.0161 -5.9626
20 6 4.2884 0.5634 -6.9973
21 6 3.2811 0.8273 -8.0266
22 7 3.3235 1.3671 -9.2408
23 6 2.2388 1.4922 -9.9725
24 6 1.0031 1.0641 -9.5055
25 6 0.9048 0.4959 -8.2495
26 6 2.0645 0.3711 -7.4877
27 8 2.3169 -0.1215 -6.2609
28 6 2.0126 -0.7450 -3.7468
29 6 1.5298 0.0003 -2.4987
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3633 0.5139 0.8899
32 1 -0.3633 0.5138 -0.8900
33 1 2.2490 -1.6317 1.1527
34 1 3.2478 -2.3961 4.2422
35 1 1.6761 -1.7487 -1.2491
36 1 3.9345 0.3055 -1.2742
37 1 3.9339 -1.2147 -0.3470
38 1 3.7907 -2.5239 -2.4139
39 1 5.1629 -1.3953 -2.5413
40 1 5.3443 0.7837 -7.0513
41 1 2.3099 1.9359 -10.9546
42 1 0.1224 1.1754 -10.1208
43 1 -0.0471 0.1571 -7.8680
44 1 1.5577 -1.7349 -3.7811
45 1 1.7335 -0.1836 -4.6384
46 1 0.4401 0.0214 -2.4870
47 1 1.9133 1.0205 -2.5117
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001731997749.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:55:57
Heat of formation + Delta-G solvation = 26.508834 kcal
Electronic energy + Delta-G solvation = -29659.831778 eV
Core-core repulsion = 25616.757464 eV
Total energy + Delta-G solvation = -4043.074314 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.168 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-43.15914 -40.29900 -39.20266 -38.06037 -35.56530 -33.64482 -32.96754 -31.98629
-31.52693 -30.83086 -30.14253 -28.28441 -26.19977 -24.74041 -24.02228 -23.60442
-22.83835 -22.13815 -21.24453 -20.06430 -19.58790 -18.58325 -17.90543 -17.14887
-17.00485 -16.82419 -16.29322 -15.79264 -15.28265 -14.88730 -14.53280 -14.16649
-14.09872 -13.96242 -13.81941 -13.78816 -13.50185 -13.49562 -13.28405 -13.07826
-12.76623 -12.55062 -12.23399 -12.05159 -11.65721 -11.18342 -11.04678 -11.02178
-10.89426 -10.78816 -10.52185 -10.25230 -10.18838 -10.15972 -9.92465 -9.79819
-9.60631 -9.45836 -9.15193 -8.92028 -8.70781 -6.95490 -5.77358 -3.05269
0.02803 0.65475 1.35487 1.89391 2.67421 2.83854 3.27481 3.42514
3.48631 3.50442 3.52551 3.95757 4.18476 4.36884 4.41202 4.57237
4.61468 4.83019 4.90228 4.96523 5.03908 5.10451 5.21010 5.26620
5.36330 5.46025 5.52486 5.59036 5.61048 5.69901 5.76180 5.82591
5.87889 5.93576 6.00789 6.06948 6.10967 6.29048 6.30252 6.41586
6.45476 6.53893 6.64095 6.78513 6.92042 7.09209 7.13606 7.37936
7.70688 7.75661 8.41566 9.52934 10.10757 10.45427 11.45354
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.023490 B = 0.002206 C = 0.002096
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1191.694959 B =12687.464754 C =13355.462866
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C 0.178 3.822
3 H 0.045 0.955
4 N -0.723 5.723
5 C -0.234 4.234
6 H 0.069 0.931
7 C -0.015 4.015
8 N -0.933 5.933
9 Si 0.904 3.096
10 H -0.281 1.281
11 H -0.293 1.293
12 H -0.292 1.292
13 C -0.091 4.091
14 C -0.122 4.122
15 C 0.110 3.890
16 N -0.592 5.592
17 C 0.594 3.406
18 O -0.513 6.513
19 C 0.002 3.998
20 C -0.107 4.107
21 C 0.065 3.935
22 N -0.440 5.440
23 C 0.101 3.899
24 C -0.144 4.144
25 C -0.059 4.059
26 C 0.008 3.992
27 O -0.168 6.168
28 C 0.095 3.905
29 C -0.128 4.128
30 H 0.045 0.955
31 H 0.051 0.949
32 H 0.037 0.963
33 H 0.383 0.617
34 H 0.254 0.746
35 H 0.069 0.931
36 H 0.063 0.937
37 H 0.095 0.905
38 H 0.073 0.927
39 H 0.093 0.907
40 H 0.178 0.822
41 H 0.167 0.833
42 H 0.152 0.848
43 H 0.148 0.852
44 H 0.074 0.926
45 H 0.100 0.900
46 H 0.081 0.919
47 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.522 3.577 -27.385 28.164
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C 0.068 3.932
3 H 0.063 0.937
4 N -0.364 5.364
5 C -0.365 4.365
6 H 0.087 0.913
7 C -0.211 4.211
8 N -0.582 5.582
9 Si 0.736 3.264
10 H -0.206 1.206
11 H -0.220 1.220
12 H -0.219 1.219
13 C -0.110 4.110
14 C -0.160 4.160
15 C -0.011 4.011
16 N -0.324 5.324
17 C 0.380 3.620
18 O -0.391 6.391
19 C -0.050 4.050
20 C -0.128 4.128
21 C -0.064 4.064
22 N -0.150 5.150
23 C -0.065 4.065
24 C -0.164 4.164
25 C -0.086 4.086
26 C -0.042 4.042
27 O -0.070 6.070
28 C -0.027 4.027
29 C -0.166 4.166
30 H 0.064 0.936
31 H 0.070 0.930
32 H 0.056 0.944
33 H 0.217 0.783
34 H 0.064 0.936
35 H 0.088 0.912
36 H 0.082 0.918
37 H 0.114 0.886
38 H 0.091 0.909
39 H 0.112 0.888
40 H 0.195 0.805
41 H 0.184 0.816
42 H 0.169 0.831
43 H 0.166 0.834
44 H 0.092 0.908
45 H 0.118 0.882
46 H 0.099 0.901
47 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges -4.218 3.848 -27.215 27.807
hybrid contribution -0.791 -0.081 1.196 1.436
sum -5.009 3.767 -26.019 26.763
Atomic orbital electron populations
1.22498 0.99543 1.00742 0.99827 1.20207 0.91573 0.95347 0.86064
0.93712 1.42413 1.78074 1.10628 1.05277 1.19257 1.36142 0.93796
0.87329 0.91293 1.24716 1.02367 0.95975 0.97996 1.69658 1.51159
1.08619 1.28734 0.86158 0.77297 0.78794 0.84197 1.20650 1.21988
1.21917 1.21407 0.95125 0.99957 0.94530 1.21903 0.95732 1.01216
0.97164 1.21902 0.99523 0.96757 0.82904 1.48112 1.07714 1.59256
1.17276 1.16786 0.86036 0.78250 0.80907 1.90892 1.12518 1.54871
1.80794 1.22223 0.81010 1.04372 0.97384 1.22506 1.00460 1.00023
0.89807 1.20645 0.92085 1.00571 0.93113 1.67046 1.32015 1.12089
1.03807 1.22870 0.87189 0.96984 0.99416 1.22095 1.00086 0.98885
0.95347 1.20538 0.95990 0.99165 0.92872 1.20777 0.97245 1.00108
0.86095 1.84303 1.25415 1.68169 1.29080 1.22280 0.78627 1.01729
1.00035 1.22027 1.01341 0.99635 0.93641 0.93575 0.92995 0.94377
0.78321 0.93625 0.91243 0.91795 0.88644 0.90867 0.88827 0.80452
0.81563 0.83075 0.83411 0.90810 0.88221 0.90078 0.91537
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.82 9.14 37.16 0.34 -2.48 16
2 C 0.18 3.30 2.47 -67.93 -0.17 3.13 16
3 H 0.04 0.88 8.08 -51.93 -0.42 0.46 16
4 N -0.72 -17.12 4.41 -53.43 -0.24 -17.35 16
5 C -0.23 -6.30 9.93 -15.06 -0.15 -6.45 16
6 H 0.07 1.84 7.83 -52.49 -0.41 1.42 16
7 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16
8 N -0.93 -27.58 13.06 55.49 0.72 -26.85 16
9 Si 0.90 22.24 29.55 -169.99 -5.02 17.22 16
10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
11 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16
12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16
13 C -0.09 -1.35 1.79 -90.58 -0.16 -1.51 16
14 C -0.12 -1.89 5.22 -26.61 -0.14 -2.02 16
15 C 0.11 1.48 6.44 -3.71 -0.02 1.46 16
16 N -0.59 -7.55 2.97 -174.13 -0.52 -8.07 16
17 C 0.59 8.16 7.66 -12.63 -0.10 8.06 16
18 O -0.51 -8.38 16.27 5.25 0.09 -8.30 16
19 C 0.00 0.02 6.73 -36.85 -0.25 -0.23 16
20 C -0.11 -1.24 10.82 -37.18 -0.40 -1.64 16
21 C 0.07 0.74 7.52 -83.18 -0.63 0.12 16
22 N -0.44 -4.68 10.41 -9.87 -0.10 -4.78 16
23 C 0.10 0.70 11.17 -17.49 -0.20 0.50 16
24 C -0.14 -0.75 10.09 -39.36 -0.40 -1.15 16
25 C -0.06 -0.40 10.19 -39.20 -0.40 -0.80 16
26 C 0.01 0.08 7.42 -38.27 -0.28 -0.21 16
27 O -0.17 -1.80 7.10 3.37 0.02 -1.78 16
28 C 0.10 1.03 6.08 -3.71 -0.02 1.00 16
29 C -0.13 -1.52 5.04 -26.62 -0.13 -1.66 16
30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16
31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16
32 H 0.04 0.52 6.40 -51.93 -0.33 0.19 16
33 H 0.38 9.64 7.58 -40.82 -0.31 9.33 16
34 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16
35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16
36 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16
37 H 0.10 1.72 7.41 -51.93 -0.38 1.34 16
38 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16
39 H 0.09 1.33 7.00 -51.93 -0.36 0.97 16
40 H 0.18 1.88 8.06 -52.49 -0.42 1.46 16
41 H 0.17 0.59 8.06 -52.49 -0.42 0.17 16
42 H 0.15 0.25 8.06 -52.48 -0.42 -0.17 16
43 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16
44 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16
45 H 0.10 1.01 4.23 -53.32 -0.23 0.78 16
46 H 0.08 0.87 6.36 -51.93 -0.33 0.54 16
47 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
LS Contribution 380.72 15.07 5.74 5.74
Total: -1.00 -32.54 380.72 -9.07 -41.61
By element:
Atomic # 1 Polarization: 13.52 SS G_CDS: -6.56 Total: 6.95 kcal
Atomic # 6 Polarization: -1.18 SS G_CDS: -3.20 Total: -4.39 kcal
Atomic # 7 Polarization: -56.93 SS G_CDS: -0.13 Total: -57.06 kcal
Atomic # 8 Polarization: -10.18 SS G_CDS: 0.11 Total: -10.08 kcal
Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal
Total LS contribution 5.74 Total: 5.74 kcal
Total: -32.54 -9.07 -41.61 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001731997749.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.120 kcal
(2) G-P(sol) polarization free energy of solvation -32.538 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.582 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.611 kcal
(6) G-S(sol) free energy of system = (1) + (5) 26.509 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds