Wall clock time and date at job start Sat Apr 11 2020 06:55:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08999 * 109.47143 * 2 1
4 4 N 1.46499 * 109.47288 * 119.99576 * 2 1 3
5 5 C 1.36936 * 119.99990 * 275.00337 * 4 2 1
6 6 H 1.07991 * 120.00390 * 359.97438 * 5 4 2
7 7 C 1.38818 * 119.99772 * 179.97438 * 5 4 2
8 8 N 1.31620 * 119.99992 * 0.02562 * 7 5 4
9 9 Si 1.86793 * 120.00066 * 179.97438 * 7 5 4
10 10 H 1.48499 * 109.47009 * 0.02562 * 9 7 5
11 11 H 1.48506 * 109.47096 * 120.00136 * 9 7 5
12 12 H 1.48498 * 109.47521 * 240.00012 * 9 7 5
13 13 C 1.52997 * 109.47137 * 240.00120 * 2 1 3
14 14 C 1.53041 * 109.46015 * 180.02562 * 13 2 1
15 15 C 1.53193 * 109.31420 * 178.61181 * 14 13 2
16 16 N 1.46921 * 108.77704 * 54.63429 * 15 14 13
17 17 C 1.34776 * 120.63490 * 126.37022 * 16 15 14
18 18 O 1.21633 * 119.99659 * 352.42445 * 17 16 15
19 19 C 1.47172 * 120.00227 * 172.42497 * 17 16 15
20 20 C 1.35748 * 125.12834 * 172.23773 * 19 17 16
21 21 C 1.46418 * 106.13810 * 179.86359 * 20 19 17
22 22 N 1.32948 * 133.88880 * 180.14291 * 21 20 19
23 23 C 1.31435 * 121.38336 * 180.27434 * 22 21 20
24 24 C 1.38864 * 121.18395 * 359.97438 * 23 22 21
25 25 C 1.38204 * 119.71299 * 0.02562 * 24 23 22
26 26 C 1.39304 * 118.33339 * 359.97438 * 25 24 23
27 27 O 1.34589 * 133.42060 * 180.02562 * 26 25 24
28 28 C 1.46932 * 118.73477 * 306.39372 * 16 15 14
29 29 C 1.53039 * 109.46576 * 59.99796 * 13 2 1
30 30 H 1.08999 * 109.47143 * 179.97438 * 1 2 3
31 31 H 1.08998 * 109.46970 * 300.00642 * 1 2 3
32 32 H 1.09003 * 109.46928 * 60.00104 * 1 2 3
33 33 H 0.97001 * 119.99878 * 94.99811 * 4 2 1
34 34 H 0.96995 * 120.00253 * 179.97438 * 8 7 5
35 35 H 1.09005 * 109.44947 * 300.02592 * 13 2 1
36 36 H 1.08999 * 109.49581 * 298.56001 * 14 13 2
37 37 H 1.09006 * 109.50310 * 58.66013 * 14 13 2
38 38 H 1.09003 * 109.58704 * 294.84481 * 15 14 13
39 39 H 1.09002 * 109.70200 * 174.49038 * 15 14 13
40 40 H 1.07998 * 126.93375 * 359.97438 * 20 19 17
41 41 H 1.07999 * 119.40693 * 179.97438 * 23 22 21
42 42 H 1.08008 * 120.14282 * 179.97438 * 24 23 22
43 43 H 1.08000 * 120.83680 * 179.97438 * 25 24 23
44 44 H 1.09000 * 109.58294 * 293.81648 * 28 16 15
45 45 H 1.09000 * 109.70224 * 173.46634 * 28 16 15
46 46 H 1.08996 * 109.49357 * 301.34092 * 29 13 2
47 47 H 1.08999 * 109.49297 * 61.40335 * 29 13 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0184 -0.6905 1.1962
5 6 2.1491 -0.0073 2.3757
6 1 1.8926 1.0406 2.4241
7 6 2.6114 -0.6618 3.5093
8 7 2.9245 -1.9388 3.4502
9 14 2.7904 0.2702 5.1182
10 1 2.3764 1.6826 4.9207
11 1 1.9293 -0.3576 6.1524
12 1 4.2073 0.2265 5.5606
13 6 2.0400 -0.7212 -1.2492
14 6 3.5704 -0.7216 -1.2486
15 6 4.0774 -1.4745 -2.4827
16 7 3.4746 -0.8770 -3.6820
17 6 4.2479 -0.4573 -4.7029
18 8 5.4582 -0.4433 -4.5832
19 6 3.6279 -0.0161 -5.9626
20 6 4.2884 0.5634 -6.9973
21 6 3.2811 0.8273 -8.0266
22 7 3.3235 1.3671 -9.2408
23 6 2.2388 1.4922 -9.9725
24 6 1.0031 1.0641 -9.5055
25 6 0.9048 0.4959 -8.2495
26 6 2.0645 0.3711 -7.4877
27 8 2.3169 -0.1215 -6.2609
28 6 2.0126 -0.7450 -3.7468
29 6 1.5298 0.0003 -2.4987
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3633 0.5139 0.8899
32 1 -0.3633 0.5138 -0.8900
33 1 2.2490 -1.6317 1.1527
34 1 3.2478 -2.3961 4.2422
35 1 1.6761 -1.7487 -1.2491
36 1 3.9345 0.3055 -1.2742
37 1 3.9339 -1.2147 -0.3470
38 1 3.7907 -2.5239 -2.4139
39 1 5.1629 -1.3953 -2.5413
40 1 5.3443 0.7837 -7.0513
41 1 2.3099 1.9359 -10.9546
42 1 0.1224 1.1754 -10.1208
43 1 -0.0471 0.1571 -7.8680
44 1 1.5577 -1.7349 -3.7811
45 1 1.7335 -0.1836 -4.6384
46 1 0.4401 0.0214 -2.4870
47 1 1.9133 1.0205 -2.5117
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001731997749.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:55:57
Heat of formation + Delta-G solvation = 6.198254 kcal
Electronic energy + Delta-G solvation = -29660.712511 eV
Core-core repulsion = 25616.757464 eV
Total energy + Delta-G solvation = -4043.955047 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.168 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-43.89745 -41.32342 -39.87734 -39.29046 -37.01465 -34.68078 -34.30103 -32.82124
-32.57403 -32.29161 -30.93943 -29.92154 -27.25636 -25.93827 -25.42500 -24.37212
-23.97576 -23.04370 -22.27747 -21.31661 -20.78140 -19.54222 -19.00324 -18.62260
-17.84717 -17.44767 -17.34048 -16.79218 -16.55259 -16.22749 -15.70122 -15.49199
-15.32919 -15.11225 -14.79404 -14.74838 -14.50927 -14.40943 -14.13687 -14.07640
-13.94770 -13.62155 -13.59782 -13.31915 -12.98142 -12.87085 -12.78399 -12.31478
-12.19572 -12.09873 -11.89004 -11.67118 -11.61808 -11.47361 -11.29952 -11.15896
-10.89059 -10.51559 -10.16357 -9.97901 -9.65842 -8.94662 -7.91655 -5.17509
-0.69039 0.07206 0.60946 1.08301 1.46178 1.47023 1.56028 1.72341
1.87300 2.57172 2.68152 2.78064 3.30419 3.42125 3.43631 3.70279
3.76333 3.80142 3.86066 3.94901 4.07190 4.12456 4.23395 4.27252
4.33327 4.45548 4.51946 4.55185 4.56631 4.66448 4.75245 4.82819
4.90531 4.92404 4.97094 4.98067 5.05764 5.08164 5.14672 5.19113
5.29041 5.31615 5.46826 5.51080 5.59950 5.68881 5.73549 6.11717
6.31772 6.71311 6.79770 7.38011 8.16781 8.38989 9.31800
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.023490 B = 0.002206 C = 0.002096
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1191.694959 B =12687.464754 C =13355.462866
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.172 3.828
3 H 0.032 0.968
4 N -0.732 5.732
5 C -0.228 4.228
6 H 0.070 0.930
7 C -0.077 4.077
8 N -0.967 5.967
9 Si 0.964 3.036
10 H -0.269 1.269
11 H -0.295 1.295
12 H -0.297 1.297
13 C -0.080 4.080
14 C -0.114 4.114
15 C 0.118 3.882
16 N -0.591 5.591
17 C 0.594 3.406
18 O -0.551 6.551
19 C -0.011 4.011
20 C -0.112 4.112
21 C 0.033 3.967
22 N -0.477 5.477
23 C 0.099 3.901
24 C -0.123 4.123
25 C -0.060 4.060
26 C -0.004 4.004
27 O -0.165 6.165
28 C 0.097 3.903
29 C -0.119 4.119
30 H 0.045 0.955
31 H 0.029 0.971
32 H 0.077 0.923
33 H 0.373 0.627
34 H 0.248 0.752
35 H 0.074 0.926
36 H 0.048 0.952
37 H 0.063 0.937
38 H 0.089 0.911
39 H 0.081 0.919
40 H 0.174 0.826
41 H 0.199 0.801
42 H 0.198 0.802
43 H 0.180 0.820
44 H 0.093 0.907
45 H 0.114 0.886
46 H 0.105 0.895
47 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.618 4.448 -30.298 31.812
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C 0.064 3.936
3 H 0.050 0.950
4 N -0.373 5.373
5 C -0.360 4.360
6 H 0.088 0.912
7 C -0.269 4.269
8 N -0.619 5.619
9 Si 0.794 3.206
10 H -0.194 1.194
11 H -0.223 1.223
12 H -0.224 1.224
13 C -0.100 4.100
14 C -0.152 4.152
15 C -0.004 4.004
16 N -0.322 5.322
17 C 0.382 3.618
18 O -0.431 6.431
19 C -0.063 4.063
20 C -0.133 4.133
21 C -0.095 4.095
22 N -0.187 5.187
23 C -0.067 4.067
24 C -0.142 4.142
25 C -0.087 4.087
26 C -0.054 4.054
27 O -0.067 6.067
28 C -0.023 4.023
29 C -0.157 4.157
30 H 0.064 0.936
31 H 0.048 0.952
32 H 0.096 0.904
33 H 0.205 0.795
34 H 0.057 0.943
35 H 0.092 0.908
36 H 0.067 0.933
37 H 0.082 0.918
38 H 0.107 0.893
39 H 0.100 0.900
40 H 0.192 0.808
41 H 0.216 0.784
42 H 0.215 0.785
43 H 0.197 0.803
44 H 0.111 0.889
45 H 0.131 0.869
46 H 0.123 0.877
47 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -7.358 4.753 -30.152 31.399
hybrid contribution 0.082 -0.248 1.860 1.878
sum -7.276 4.505 -28.292 29.558
Atomic orbital electron populations
1.22345 0.97535 1.01006 1.00690 1.20455 0.92838 0.94597 0.85755
0.94961 1.42588 1.78322 1.10270 1.06085 1.19571 1.34123 0.93884
0.88453 0.91228 1.25432 1.03525 0.96875 1.01085 1.69796 1.53015
1.09978 1.29092 0.85202 0.76634 0.78205 0.80543 1.19365 1.22262
1.22432 1.21286 0.94243 1.00150 0.94289 1.21740 0.96547 1.00097
0.96848 1.21723 0.98930 0.97260 0.82442 1.48158 1.08645 1.58759
1.16600 1.16969 0.85689 0.77650 0.81520 1.90862 1.14095 1.56482
1.81634 1.21704 0.81885 1.05902 0.96774 1.22639 1.00736 0.99549
0.90379 1.20668 0.92497 1.02477 0.93842 1.67040 1.34206 1.13418
1.04033 1.23613 0.87089 0.95816 1.00133 1.22649 1.00857 0.95928
0.94782 1.21091 0.96035 0.98607 0.92929 1.21206 0.98055 1.00360
0.85795 1.84209 1.24330 1.68394 1.29742 1.22423 0.77146 1.02888
0.99879 1.21971 1.02621 0.98897 0.92242 0.93566 0.95215 0.90404
0.79459 0.94260 0.90757 0.93349 0.91798 0.89314 0.90045 0.80816
0.78394 0.78503 0.80308 0.88894 0.86912 0.87683 0.92117
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -5.00 9.14 71.98 0.66 -4.35 16
2 C 0.17 6.29 2.47 44.99 0.11 6.40 16
3 H 0.03 1.27 8.08 -2.39 -0.02 1.25 16
4 N -0.73 -35.30 4.41 -322.95 -1.42 -36.72 16
5 C -0.23 -12.46 9.93 84.04 0.83 -11.62 16
6 H 0.07 3.72 7.83 -2.92 -0.02 3.70 16
7 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16
8 N -0.97 -58.67 13.06 21.65 0.28 -58.39 16
9 Si 0.96 46.48 29.55 68.60 2.03 48.51 16
10 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16
11 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16
12 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16
13 C -0.08 -2.32 1.79 -10.77 -0.02 -2.34 16
14 C -0.11 -3.63 5.22 30.67 0.16 -3.47 16
15 C 0.12 3.23 6.44 86.36 0.56 3.79 16
16 N -0.59 -14.82 2.97 -823.07 -2.45 -17.27 16
17 C 0.59 16.66 7.66 86.59 0.66 17.32 16
18 O -0.55 -18.92 16.27 -4.14 -0.07 -18.98 16
19 C -0.01 -0.27 6.73 24.04 0.16 -0.11 16
20 C -0.11 -2.69 10.82 23.82 0.26 -2.43 16
21 C 0.03 0.74 7.52 41.70 0.31 1.05 16
22 N -0.48 -9.56 10.41 -185.14 -1.93 -11.49 16
23 C 0.10 1.04 11.17 84.90 0.95 1.99 16
24 C -0.12 -0.69 10.09 22.41 0.23 -0.46 16
25 C -0.06 -0.57 10.19 22.52 0.23 -0.34 16
26 C 0.00 -0.08 7.42 23.12 0.17 0.09 16
27 O -0.17 -3.30 7.10 -10.85 -0.08 -3.37 16
28 C 0.10 1.88 6.08 86.36 0.53 2.40 16
29 C -0.12 -2.54 5.04 30.67 0.15 -2.39 16
30 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16
31 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16
32 H 0.08 1.87 6.40 -2.39 -0.02 1.85 16
33 H 0.37 19.31 7.58 -92.71 -0.70 18.61 16
34 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16
35 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16
36 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16
37 H 0.06 2.44 7.41 -2.38 -0.02 2.42 16
38 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16
39 H 0.08 2.45 7.00 -2.39 -0.02 2.43 16
40 H 0.17 4.04 8.06 -2.91 -0.02 4.02 16
41 H 0.20 0.59 8.06 -2.91 -0.02 0.57 16
42 H 0.20 -0.69 8.06 -2.91 -0.02 -0.71 16
43 H 0.18 0.54 8.06 -2.91 -0.02 0.52 16
44 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16
45 H 0.11 1.98 4.23 -24.37 -0.10 1.88 16
46 H 0.10 1.79 6.36 -2.39 -0.02 1.78 16
47 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16
Total: -1.00 -74.44 380.72 3.00 -71.44
By element:
Atomic # 1 Polarization: 24.48 SS G_CDS: 0.21 Total: 24.69 kcal
Atomic # 6 Polarization: -4.83 SS G_CDS: 6.42 Total: 1.59 kcal
Atomic # 7 Polarization: -118.36 SS G_CDS: -5.51 Total: -123.88 kcal
Atomic # 8 Polarization: -22.21 SS G_CDS: -0.14 Total: -22.36 kcal
Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal
Total: -74.44 3.00 -71.44 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001731997749.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.638 kcal
(2) G-P(sol) polarization free energy of solvation -74.435 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.202 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.996 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.440 kcal
(6) G-S(sol) free energy of system = (1) + (5) 6.198 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds