Wall clock time and date at job start Sat Apr 11 2020 06:54:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09001 * 109.47678 * 2 1
4 4 N 1.46898 * 109.47339 * 120.00808 * 2 1 3
5 5 C 1.46905 * 110.99738 * 273.65429 * 4 2 1
6 6 H 1.09002 * 109.49810 * 33.66017 * 5 4 2
7 7 C 1.53044 * 109.49651 * 273.56177 * 5 4 2
8 8 C 1.53043 * 109.53647 * 178.68120 * 7 5 4
9 9 C 1.53191 * 109.30927 * 61.37055 * 8 7 5
10 10 N 1.46927 * 108.77540 * 305.36123 * 9 8 7
11 11 C 1.34783 * 120.63220 * 233.63412 * 10 9 8
12 12 O 1.21276 * 120.00213 * 179.97438 * 11 10 9
13 13 C 1.50700 * 120.00010 * 359.97438 * 11 10 9
14 14 S 1.80993 * 109.47320 * 179.97438 * 13 11 10
15 15 C 1.76198 * 100.00224 * 179.97438 * 14 13 11
16 16 H 1.08004 * 119.99989 * 359.97438 * 15 14 13
17 17 C 1.38794 * 120.00340 * 180.02562 * 15 14 13
18 18 N 1.31636 * 119.99702 * 359.97438 * 17 15 14
19 19 Si 1.86802 * 120.00484 * 180.02562 * 17 15 14
20 20 H 1.48506 * 109.46920 * 59.99450 * 19 17 15
21 21 H 1.48495 * 109.47268 * 179.97438 * 19 17 15
22 22 H 1.48505 * 109.46648 * 300.00209 * 19 17 15
23 23 C 1.46927 * 118.74190 * 53.61032 * 10 9 8
24 24 C 1.50703 * 109.46910 * 240.00313 * 2 1 3
25 25 O 1.21284 * 120.00103 * 253.72825 * 24 2 1
26 26 N 1.34780 * 119.99974 * 73.72641 * 24 2 1
27 27 C 1.46501 * 120.00027 * 174.77675 * 26 24 2
28 28 C 1.46499 * 119.99949 * 354.78102 * 26 24 2
29 29 H 1.08996 * 109.46907 * 53.03334 * 1 2 3
30 30 H 1.08993 * 109.47241 * 173.03898 * 1 2 3
31 31 H 1.09003 * 109.46751 * 293.03978 * 1 2 3
32 32 H 1.00897 * 111.00449 * 37.60367 * 4 2 1
33 33 H 1.08999 * 109.45817 * 298.70375 * 7 5 4
34 34 H 1.09006 * 109.45852 * 58.66350 * 7 5 4
35 35 H 1.08998 * 109.49797 * 301.41421 * 8 7 5
36 36 H 1.08998 * 109.52277 * 181.33336 * 8 7 5
37 37 H 1.09007 * 109.58335 * 185.57835 * 9 8 7
38 38 H 1.08991 * 109.70747 * 65.22029 * 9 8 7
39 39 H 1.09000 * 109.46978 * 300.00178 * 13 11 10
40 40 H 1.09007 * 109.47198 * 59.99829 * 13 11 10
41 41 H 0.97006 * 119.99757 * 180.02562 * 18 17 15
42 42 H 1.08997 * 109.59177 * 186.60704 * 23 10 9
43 43 H 1.09000 * 109.58427 * 66.17498 * 23 10 9
44 44 H 1.09006 * 109.46917 * 89.99890 * 27 26 24
45 45 H 1.08994 * 109.47192 * 210.00235 * 27 26 24
46 46 H 1.08997 * 109.46850 * 330.00439 * 27 26 24
47 47 H 1.09004 * 109.47076 * 354.88395 * 28 26 24
48 48 H 1.08994 * 109.47266 * 114.89133 * 28 26 24
49 49 H 1.09004 * 109.46828 * 234.89238 * 28 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 7 2.0197 -0.6926 1.1993
5 6 2.1128 0.2298 2.3388
6 1 1.3154 0.9701 2.2737
7 6 3.4701 0.9365 2.3144
8 6 3.5551 1.9218 3.4823
9 6 3.4334 1.1543 4.8025
10 7 2.1994 0.3574 4.7741
11 6 1.2905 0.4632 5.7638
12 8 0.2756 -0.1997 5.7286
13 6 1.5355 1.4054 6.9141
14 16 0.1445 1.3220 8.0691
15 6 0.6804 2.4862 9.2782
16 1 1.6249 2.9955 9.1561
17 6 -0.1108 2.7481 10.3881
18 7 -1.2618 2.1270 10.5372
19 14 0.4570 3.9830 11.6696
20 1 0.6323 5.3127 11.0321
21 1 -0.5601 4.0813 12.7471
22 1 1.7500 3.5370 12.2479
23 6 1.9746 -0.5568 3.6461
24 6 2.0323 -0.7104 -1.2305
25 8 2.5119 -1.8204 -1.1367
26 7 1.9485 -0.1121 -2.4354
27 6 2.5391 -0.7520 -3.6136
28 6 1.2669 1.1780 -2.5668
29 1 -0.3633 0.6180 -0.8211
30 1 -0.3633 -1.0200 -0.1245
31 1 -0.3633 0.4022 0.9457
32 1 1.4367 -1.4853 1.4225
33 1 4.2660 0.1972 2.4042
34 1 3.5812 1.4771 1.3744
35 1 2.7446 2.6466 3.4066
36 1 4.5124 2.4421 3.4510
37 1 3.3939 1.8595 5.6328
38 1 4.2920 0.4941 4.9244
39 1 2.4530 1.1198 7.4286
40 1 1.6327 2.4231 6.5359
41 1 -1.8149 2.3103 11.3127
42 1 0.9726 -0.9807 3.7132
43 1 2.7145 -1.3568 3.6711
44 1 1.7987 -1.3976 -4.0859
45 1 2.8580 0.0133 -4.3211
46 1 3.3999 -1.3477 -3.3102
47 1 0.8173 1.4503 -1.6119
48 1 1.9875 1.9414 -2.8601
49 1 0.4887 1.1020 -3.3262
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001207431640.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:54:35
Heat of formation + Delta-G solvation = -57.706539 kcal
Electronic energy + Delta-G solvation = -28067.611019 eV
Core-core repulsion = 24156.328804 eV
Total energy + Delta-G solvation = -3911.282215 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.172 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-40.54871 -39.86800 -37.76926 -35.91093 -35.79276 -32.70039 -32.43652 -31.76594
-29.72268 -28.45293 -27.59041 -26.82799 -25.60082 -25.16635 -23.54539 -22.70330
-20.67537 -19.68567 -18.96300 -17.79471 -17.49919 -16.77410 -16.70912 -16.03577
-15.65633 -15.61015 -15.15093 -14.81736 -14.79606 -14.43853 -14.29396 -14.05808
-13.82433 -13.78506 -13.30767 -13.20059 -13.07433 -12.92082 -12.79273 -12.63869
-12.58388 -12.36670 -12.13762 -11.95236 -11.87242 -11.56887 -11.10454 -11.07375
-11.04784 -11.03783 -10.83003 -10.75728 -10.00322 -9.82336 -9.39384 -9.09580
-9.06921 -8.76482 -8.51177 -8.24093 -6.51377 -6.22409 -3.93284 2.34406
2.52235 2.89684 3.02742 3.22560 3.24264 3.28148 3.54295 3.85223
4.14001 4.19353 4.45949 4.53149 4.55930 4.67290 4.70969 4.79624
4.83543 4.87361 4.92088 4.99495 5.05988 5.10189 5.12609 5.16413
5.20946 5.29044 5.34715 5.41982 5.44766 5.59009 5.65076 5.67496
5.70457 5.76143 5.81222 5.87469 5.93261 6.00412 6.10324 6.12271
6.48590 6.68226 6.96196 7.05487 7.53838 7.58379 7.90140 8.33930
8.53468 9.22665 10.84898
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.025793 B = 0.001974 C = 0.001946
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1085.307314 B =14184.140567 C =14384.756114
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C 0.070 3.930
3 H 0.101 0.899
4 N -0.661 5.661
5 C 0.075 3.925
6 H 0.053 0.947
7 C -0.106 4.106
8 C -0.135 4.135
9 C 0.107 3.893
10 N -0.617 5.617
11 C 0.536 3.464
12 O -0.518 6.518
13 C -0.150 4.150
14 S -0.061 6.061
15 C -0.536 4.536
16 H 0.072 0.928
17 C 0.074 3.926
18 N -0.867 5.867
19 Si 0.919 3.081
20 H -0.274 1.274
21 H -0.283 1.283
22 H -0.274 1.274
23 C 0.113 3.887
24 C 0.521 3.479
25 O -0.518 6.518
26 N -0.627 5.627
27 C 0.087 3.913
28 C 0.067 3.933
29 H 0.072 0.928
30 H 0.067 0.933
31 H 0.073 0.927
32 H 0.353 0.647
33 H 0.072 0.928
34 H 0.060 0.940
35 H 0.067 0.933
36 H 0.078 0.922
37 H 0.090 0.910
38 H 0.069 0.931
39 H 0.090 0.910
40 H 0.089 0.911
41 H 0.269 0.731
42 H 0.092 0.908
43 H 0.074 0.926
44 H 0.053 0.947
45 H 0.068 0.932
46 H 0.075 0.925
47 H 0.085 0.915
48 H 0.060 0.940
49 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.212 0.322 -27.341 28.853
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.246 4.246
2 C -0.044 4.044
3 H 0.119 0.881
4 N -0.293 5.293
5 C -0.035 4.035
6 H 0.071 0.929
7 C -0.144 4.144
8 C -0.174 4.174
9 C -0.017 4.017
10 N -0.354 5.354
11 C 0.324 3.676
12 O -0.392 6.392
13 C -0.300 4.300
14 S 0.166 5.834
15 C -0.684 4.684
16 H 0.090 0.910
17 C -0.136 4.136
18 N -0.503 5.503
19 Si 0.745 3.255
20 H -0.199 1.199
21 H -0.208 1.208
22 H -0.199 1.199
23 C -0.011 4.011
24 C 0.308 3.692
25 O -0.392 6.392
26 N -0.363 5.363
27 C -0.055 4.055
28 C -0.076 4.076
29 H 0.091 0.909
30 H 0.086 0.914
31 H 0.092 0.908
32 H 0.173 0.827
33 H 0.091 0.909
34 H 0.078 0.922
35 H 0.086 0.914
36 H 0.096 0.904
37 H 0.109 0.891
38 H 0.087 0.913
39 H 0.108 0.892
40 H 0.107 0.893
41 H 0.079 0.921
42 H 0.110 0.890
43 H 0.092 0.908
44 H 0.071 0.929
45 H 0.087 0.913
46 H 0.094 0.906
47 H 0.103 0.897
48 H 0.079 0.921
49 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges 8.456 -1.253 -27.375 28.678
hybrid contribution 0.628 1.872 0.877 2.161
sum 9.084 0.619 -26.497 28.018
Atomic orbital electron populations
1.22620 0.94569 1.03638 1.03780 1.21475 0.94316 0.98509 0.90054
0.88089 1.60129 1.56992 1.09846 1.02380 1.21925 0.97838 0.94301
0.89476 0.92889 1.21531 0.97034 0.98061 0.97752 1.21946 1.02697
0.98214 0.94565 1.21752 0.86632 0.94749 0.98540 1.48026 1.21082
1.43546 1.22710 1.20355 0.82263 0.82569 0.82450 1.90688 1.26623
1.44866 1.77005 1.23551 1.07224 1.00498 0.98774 1.85402 1.21434
1.56842 1.19758 1.22816 1.08798 1.27828 1.08950 0.90985 1.24992
0.94582 0.96493 0.97502 1.70013 1.10787 1.40477 1.28987 0.86228
0.78474 0.80740 0.80078 1.19949 1.20810 1.19920 1.21568 1.03547
0.91928 0.84028 1.20636 0.78483 0.86247 0.83857 1.90697 1.43784
1.19060 1.85632 1.47743 1.57797 1.22477 1.08318 1.21586 0.98950
0.98029 0.86954 1.22044 0.97364 0.84557 1.03596 0.90914 0.91399
0.90798 0.82675 0.90881 0.92175 0.91410 0.90387 0.89129 0.91301
0.89205 0.89260 0.92129 0.89010 0.90791 0.92876 0.91336 0.90604
0.89662 0.92110 0.91701
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -1.31 8.79 37.16 0.33 -0.98 16
2 C 0.07 0.58 1.94 -68.86 -0.13 0.45 16
3 H 0.10 0.71 6.46 -51.93 -0.34 0.38 16
4 N -0.66 -6.52 5.60 -100.82 -0.56 -7.08 16
5 C 0.07 0.75 2.42 -67.59 -0.16 0.58 16
6 H 0.05 0.56 7.21 -51.93 -0.37 0.18 16
7 C -0.11 -0.94 5.39 -26.69 -0.14 -1.09 16
8 C -0.14 -1.18 6.08 -26.61 -0.16 -1.34 16
9 C 0.11 1.15 6.34 -3.71 -0.02 1.12 16
10 N -0.62 -8.67 2.97 -172.77 -0.51 -9.18 16
11 C 0.54 10.10 7.72 -10.98 -0.08 10.02 16
12 O -0.52 -11.73 15.27 5.56 0.08 -11.64 16
13 C -0.15 -3.02 4.50 36.01 0.16 -2.85 16
14 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16
15 C -0.54 -15.14 9.50 30.94 0.29 -14.85 16
16 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16
17 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16
18 N -0.87 -26.04 13.22 55.49 0.73 -25.31 16
19 Si 0.92 21.25 29.55 -169.99 -5.02 16.22 16
20 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16
21 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16
22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16
23 C 0.11 1.39 5.68 -3.71 -0.02 1.37 16
24 C 0.52 5.28 6.99 -10.98 -0.08 5.20 16
25 O -0.52 -7.34 16.13 5.55 0.09 -7.25 16
26 N -0.63 -4.63 3.27 -189.51 -0.62 -5.25 16
27 C 0.09 0.55 10.44 59.85 0.62 1.18 16
28 C 0.07 0.27 9.95 59.85 0.60 0.87 16
29 H 0.07 0.37 5.80 -51.93 -0.30 0.07 16
30 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16
31 H 0.07 0.56 7.49 -51.93 -0.39 0.17 16
32 H 0.35 3.59 8.07 -39.29 -0.32 3.27 16
33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
34 H 0.06 0.50 7.54 -51.93 -0.39 0.10 16
35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16
36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16
37 H 0.09 0.99 5.93 -51.93 -0.31 0.68 16
38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
39 H 0.09 1.68 7.94 -51.92 -0.41 1.27 16
40 H 0.09 1.65 7.69 -51.91 -0.40 1.25 16
41 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16
42 H 0.09 1.28 7.00 -51.93 -0.36 0.92 16
43 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16
44 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16
45 H 0.07 0.27 8.07 -51.93 -0.42 -0.15 16
46 H 0.08 0.60 7.50 -51.93 -0.39 0.21 16
47 H 0.08 0.30 4.01 -51.93 -0.21 0.10 16
48 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16
49 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16
LS Contribution 399.26 15.07 6.02 6.02
Total: -1.00 -36.42 399.26 -8.87 -45.29
By element:
Atomic # 1 Polarization: 8.34 SS G_CDS: -7.96 Total: 0.38 kcal
Atomic # 6 Polarization: 0.57 SS G_CDS: 1.10 Total: 1.67 kcal
Atomic # 7 Polarization: -45.86 SS G_CDS: -0.96 Total: -46.82 kcal
Atomic # 8 Polarization: -19.07 SS G_CDS: 0.17 Total: -18.90 kcal
Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal
Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal
Total LS contribution 6.02 Total: 6.02 kcal
Total: -36.42 -8.87 -45.29 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001207431640.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.418 kcal
(2) G-P(sol) polarization free energy of solvation -36.421 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.839 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.288 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.707 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds