Wall clock time and date at job start Sat Apr 11 2020 06:54:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09001 * 109.47678 * 2 1
4 4 N 1.46898 * 109.47339 * 120.00808 * 2 1 3
5 5 C 1.46905 * 110.99738 * 273.65429 * 4 2 1
6 6 H 1.09002 * 109.49810 * 33.66017 * 5 4 2
7 7 C 1.53044 * 109.49651 * 273.56177 * 5 4 2
8 8 C 1.53043 * 109.53647 * 178.68120 * 7 5 4
9 9 C 1.53191 * 109.30927 * 61.37055 * 8 7 5
10 10 N 1.46927 * 108.77540 * 305.36123 * 9 8 7
11 11 C 1.34783 * 120.63220 * 233.63412 * 10 9 8
12 12 O 1.21276 * 120.00213 * 179.97438 * 11 10 9
13 13 C 1.50700 * 120.00010 * 359.97438 * 11 10 9
14 14 S 1.80993 * 109.47320 * 179.97438 * 13 11 10
15 15 C 1.76198 * 100.00224 * 179.97438 * 14 13 11
16 16 H 1.08004 * 119.99989 * 359.97438 * 15 14 13
17 17 C 1.38794 * 120.00340 * 180.02562 * 15 14 13
18 18 N 1.31636 * 119.99702 * 359.97438 * 17 15 14
19 19 Si 1.86802 * 120.00484 * 180.02562 * 17 15 14
20 20 H 1.48506 * 109.46920 * 59.99450 * 19 17 15
21 21 H 1.48495 * 109.47268 * 179.97438 * 19 17 15
22 22 H 1.48505 * 109.46648 * 300.00209 * 19 17 15
23 23 C 1.46927 * 118.74190 * 53.61032 * 10 9 8
24 24 C 1.50703 * 109.46910 * 240.00313 * 2 1 3
25 25 O 1.21284 * 120.00103 * 253.72825 * 24 2 1
26 26 N 1.34780 * 119.99974 * 73.72641 * 24 2 1
27 27 C 1.46501 * 120.00027 * 174.77675 * 26 24 2
28 28 C 1.46499 * 119.99949 * 354.78102 * 26 24 2
29 29 H 1.08996 * 109.46907 * 53.03334 * 1 2 3
30 30 H 1.08993 * 109.47241 * 173.03898 * 1 2 3
31 31 H 1.09003 * 109.46751 * 293.03978 * 1 2 3
32 32 H 1.00897 * 111.00449 * 37.60367 * 4 2 1
33 33 H 1.08999 * 109.45817 * 298.70375 * 7 5 4
34 34 H 1.09006 * 109.45852 * 58.66350 * 7 5 4
35 35 H 1.08998 * 109.49797 * 301.41421 * 8 7 5
36 36 H 1.08998 * 109.52277 * 181.33336 * 8 7 5
37 37 H 1.09007 * 109.58335 * 185.57835 * 9 8 7
38 38 H 1.08991 * 109.70747 * 65.22029 * 9 8 7
39 39 H 1.09000 * 109.46978 * 300.00178 * 13 11 10
40 40 H 1.09007 * 109.47198 * 59.99829 * 13 11 10
41 41 H 0.97006 * 119.99757 * 180.02562 * 18 17 15
42 42 H 1.08997 * 109.59177 * 186.60704 * 23 10 9
43 43 H 1.09000 * 109.58427 * 66.17498 * 23 10 9
44 44 H 1.09006 * 109.46917 * 89.99890 * 27 26 24
45 45 H 1.08994 * 109.47192 * 210.00235 * 27 26 24
46 46 H 1.08997 * 109.46850 * 330.00439 * 27 26 24
47 47 H 1.09004 * 109.47076 * 354.88395 * 28 26 24
48 48 H 1.08994 * 109.47266 * 114.89133 * 28 26 24
49 49 H 1.09004 * 109.46828 * 234.89238 * 28 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 7 2.0197 -0.6926 1.1993
5 6 2.1128 0.2298 2.3388
6 1 1.3154 0.9701 2.2737
7 6 3.4701 0.9365 2.3144
8 6 3.5551 1.9218 3.4823
9 6 3.4334 1.1543 4.8025
10 7 2.1994 0.3574 4.7741
11 6 1.2905 0.4632 5.7638
12 8 0.2756 -0.1997 5.7286
13 6 1.5355 1.4054 6.9141
14 16 0.1445 1.3220 8.0691
15 6 0.6804 2.4862 9.2782
16 1 1.6249 2.9955 9.1561
17 6 -0.1108 2.7481 10.3881
18 7 -1.2618 2.1270 10.5372
19 14 0.4570 3.9830 11.6696
20 1 0.6323 5.3127 11.0321
21 1 -0.5601 4.0813 12.7471
22 1 1.7500 3.5370 12.2479
23 6 1.9746 -0.5568 3.6461
24 6 2.0323 -0.7104 -1.2305
25 8 2.5119 -1.8204 -1.1367
26 7 1.9485 -0.1121 -2.4354
27 6 2.5391 -0.7520 -3.6136
28 6 1.2669 1.1780 -2.5668
29 1 -0.3633 0.6180 -0.8211
30 1 -0.3633 -1.0200 -0.1245
31 1 -0.3633 0.4022 0.9457
32 1 1.4367 -1.4853 1.4225
33 1 4.2660 0.1972 2.4042
34 1 3.5812 1.4771 1.3744
35 1 2.7446 2.6466 3.4066
36 1 4.5124 2.4421 3.4510
37 1 3.3939 1.8595 5.6328
38 1 4.2920 0.4941 4.9244
39 1 2.4530 1.1198 7.4286
40 1 1.6327 2.4231 6.5359
41 1 -1.8149 2.3103 11.3127
42 1 0.9726 -0.9807 3.7132
43 1 2.7145 -1.3568 3.6711
44 1 1.7987 -1.3976 -4.0859
45 1 2.8580 0.0133 -4.3211
46 1 3.3999 -1.3477 -3.3102
47 1 0.8173 1.4503 -1.6119
48 1 1.9875 1.9414 -2.8601
49 1 0.4887 1.1020 -3.3262
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001207431640.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:54:33
Heat of formation + Delta-G solvation = -84.188671 kcal
Electronic energy + Delta-G solvation = -28068.759371 eV
Core-core repulsion = 24156.328804 eV
Total energy + Delta-G solvation = -3912.430566 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.172 amu
Computer time = 2.03 seconds
Orbital eigenvalues (eV)
-41.42666 -40.92564 -38.87873 -36.77771 -36.54319 -34.57810 -33.70447 -32.62195
-31.01643 -29.15251 -28.32470 -27.66737 -27.39339 -26.26602 -24.28163 -23.52693
-21.65215 -20.55259 -20.09263 -19.46073 -18.37480 -18.09082 -17.49531 -16.88649
-16.82925 -16.66079 -16.61542 -16.18614 -15.85549 -15.58337 -15.25464 -15.03500
-14.67578 -14.64100 -14.47453 -14.29989 -14.09530 -13.87126 -13.49640 -13.45865
-13.40238 -13.28078 -13.15741 -13.07722 -12.86085 -12.75590 -12.61843 -12.47780
-12.35852 -11.93878 -11.86145 -11.71696 -11.66267 -11.12123 -10.91169 -10.77506
-10.25933 -9.74759 -9.67857 -9.46173 -8.67012 -8.33723 -6.12321 1.24620
1.44657 1.45353 1.53933 1.55680 1.61386 1.91308 2.11904 2.28125
3.00319 3.08666 3.25141 3.51284 3.60005 3.74791 3.92181 3.97625
4.00612 4.04717 4.08898 4.24801 4.25080 4.26971 4.39967 4.44363
4.49579 4.52150 4.54796 4.63852 4.68040 4.76026 4.79337 4.81492
4.88986 4.91874 4.99701 5.06278 5.13217 5.14576 5.35107 5.42244
5.48288 5.51515 5.88313 6.20157 6.20453 6.26979 6.37828 7.07283
7.11168 7.19925 8.75163
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.025793 B = 0.001974 C = 0.001946
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1085.307314 B =14184.140567 C =14384.756114
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C 0.074 3.926
3 H 0.120 0.880
4 N -0.670 5.670
5 C 0.087 3.913
6 H 0.050 0.950
7 C -0.101 4.101
8 C -0.127 4.127
9 C 0.096 3.904
10 N -0.603 5.603
11 C 0.533 3.467
12 O -0.567 6.567
13 C -0.122 4.122
14 S -0.153 6.153
15 C -0.545 4.545
16 H 0.084 0.916
17 C 0.013 3.987
18 N -0.911 5.911
19 Si 0.998 3.002
20 H -0.261 1.261
21 H -0.280 1.280
22 H -0.262 1.262
23 C 0.113 3.887
24 C 0.515 3.485
25 O -0.570 6.570
26 N -0.624 5.624
27 C 0.084 3.916
28 C 0.061 3.939
29 H 0.096 0.904
30 H 0.055 0.945
31 H 0.067 0.933
32 H 0.347 0.653
33 H 0.070 0.930
34 H 0.074 0.926
35 H 0.064 0.936
36 H 0.105 0.895
37 H 0.092 0.908
38 H 0.087 0.913
39 H 0.107 0.893
40 H 0.110 0.890
41 H 0.271 0.729
42 H 0.069 0.931
43 H 0.081 0.919
44 H 0.055 0.945
45 H 0.098 0.902
46 H 0.054 0.946
47 H 0.090 0.910
48 H 0.078 0.922
49 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.369 2.961 -28.712 31.023
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.240 4.240
2 C -0.039 4.039
3 H 0.138 0.862
4 N -0.302 5.302
5 C -0.023 4.023
6 H 0.068 0.932
7 C -0.139 4.139
8 C -0.165 4.165
9 C -0.026 4.026
10 N -0.337 5.337
11 C 0.321 3.679
12 O -0.445 6.445
13 C -0.273 4.273
14 S 0.074 5.926
15 C -0.693 4.693
16 H 0.102 0.898
17 C -0.192 4.192
18 N -0.548 5.548
19 Si 0.820 3.180
20 H -0.185 1.185
21 H -0.205 1.205
22 H -0.187 1.187
23 C -0.011 4.011
24 C 0.303 3.697
25 O -0.448 6.448
26 N -0.359 5.359
27 C -0.059 4.059
28 C -0.081 4.081
29 H 0.114 0.886
30 H 0.074 0.926
31 H 0.086 0.914
32 H 0.167 0.833
33 H 0.089 0.911
34 H 0.093 0.907
35 H 0.082 0.918
36 H 0.124 0.876
37 H 0.110 0.890
38 H 0.106 0.894
39 H 0.125 0.875
40 H 0.128 0.872
41 H 0.080 0.920
42 H 0.087 0.913
43 H 0.100 0.900
44 H 0.073 0.927
45 H 0.116 0.884
46 H 0.073 0.927
47 H 0.109 0.891
48 H 0.097 0.903
49 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges 10.656 1.433 -28.816 30.756
hybrid contribution 0.025 1.010 1.118 1.507
sum 10.681 2.443 -27.697 29.786
Atomic orbital electron populations
1.22562 0.93662 1.03361 1.04372 1.21510 0.94933 0.98824 0.88650
0.86230 1.60165 1.57319 1.09885 1.02796 1.21795 0.98726 0.93727
0.88099 0.93230 1.21513 0.95760 0.98006 0.98623 1.21913 1.04072
0.97719 0.92821 1.22114 0.85335 0.95022 1.00112 1.48011 1.20947
1.43204 1.21546 1.20166 0.82502 0.82110 0.83102 1.90673 1.28894
1.46808 1.78171 1.23362 1.04166 1.02207 0.97594 1.85603 1.26636
1.57655 1.22658 1.23162 1.09262 1.27728 1.09169 0.89790 1.26139
0.94493 0.98594 0.99960 1.70187 1.12325 1.42381 1.29892 0.85005
0.78202 0.78052 0.76746 1.18504 1.20505 1.18670 1.21654 1.02540
0.92215 0.84661 1.20971 0.77940 0.85759 0.85073 1.90672 1.46403
1.21239 1.86495 1.47886 1.56983 1.23283 1.07699 1.21681 0.98249
0.98885 0.87035 1.22291 0.98089 0.83167 1.04544 0.88589 0.92614
0.91407 0.83310 0.91140 0.90723 0.91750 0.87637 0.88992 0.89442
0.87463 0.87205 0.92027 0.91255 0.90043 0.92679 0.88373 0.92719
0.89123 0.90346 0.90112
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.35 8.79 71.98 0.63 -1.71 16
2 C 0.07 1.13 1.94 44.17 0.09 1.22 16
3 H 0.12 1.36 6.46 -2.39 -0.02 1.35 16
4 N -0.67 -12.87 5.60 -472.89 -2.65 -15.51 16
5 C 0.09 1.62 2.42 44.99 0.11 1.73 16
6 H 0.05 0.98 7.21 -2.39 -0.02 0.96 16
7 C -0.10 -1.51 5.39 30.62 0.17 -1.35 16
8 C -0.13 -1.77 6.08 30.67 0.19 -1.59 16
9 C 0.10 1.80 6.34 86.36 0.55 2.35 16
10 N -0.60 -16.35 2.97 -818.90 -2.43 -18.78 16
11 C 0.53 20.23 7.72 87.66 0.68 20.91 16
12 O -0.57 -26.73 15.27 -3.02 -0.05 -26.78 16
13 C -0.12 -4.86 4.50 71.24 0.32 -4.54 16
14 S -0.15 -8.49 20.57 -56.49 -1.16 -9.65 16
15 C -0.55 -30.91 9.50 67.95 0.65 -30.26 16
16 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16
17 C 0.01 0.73 5.49 84.86 0.47 1.20 16
18 N -0.91 -55.90 13.22 21.65 0.29 -55.62 16
19 Si 1.00 43.16 29.55 68.60 2.03 45.19 16
20 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16
21 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16
22 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16
23 C 0.11 2.74 5.68 86.36 0.49 3.24 16
24 C 0.51 10.07 6.99 87.66 0.61 10.68 16
25 O -0.57 -16.52 16.13 -3.04 -0.05 -16.57 16
26 N -0.62 -8.14 3.27 -871.88 -2.85 -10.99 16
27 C 0.08 0.95 10.44 127.77 1.33 2.29 16
28 C 0.06 0.31 9.95 127.77 1.27 1.58 16
29 H 0.10 0.77 5.80 -2.39 -0.01 0.76 16
30 H 0.05 0.87 8.13 -2.39 -0.02 0.85 16
31 H 0.07 0.99 7.49 -2.39 -0.02 0.97 16
32 H 0.35 7.29 8.07 -89.70 -0.72 6.57 16
33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16
34 H 0.07 0.96 7.54 -2.38 -0.02 0.94 16
35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16
36 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16
37 H 0.09 1.74 5.93 -2.38 -0.01 1.72 16
38 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16
39 H 0.11 3.87 7.94 -2.40 -0.02 3.86 16
40 H 0.11 3.90 7.69 -2.39 -0.02 3.88 16
41 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16
42 H 0.07 2.03 7.00 -2.39 -0.02 2.01 16
43 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16
44 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16
45 H 0.10 0.51 8.07 -2.39 -0.02 0.49 16
46 H 0.05 0.87 7.50 -2.39 -0.02 0.85 16
47 H 0.09 0.36 4.01 -2.38 -0.01 0.35 16
48 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16
49 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16
Total: -1.00 -83.14 399.26 0.90 -82.24
By element:
Atomic # 1 Polarization: 20.50 SS G_CDS: 0.23 Total: 20.74 kcal
Atomic # 6 Polarization: -1.82 SS G_CDS: 7.54 Total: 5.73 kcal
Atomic # 7 Polarization: -93.25 SS G_CDS: -7.65 Total: -100.90 kcal
Atomic # 8 Polarization: -43.25 SS G_CDS: -0.10 Total: -43.34 kcal
Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal
Atomic # 16 Polarization: -8.49 SS G_CDS: -1.16 Total: -9.65 kcal
Total: -83.14 0.90 -82.24 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001207431640.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -1.946 kcal
(2) G-P(sol) polarization free energy of solvation -83.140 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.086 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.898 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.243 kcal
(6) G-S(sol) free energy of system = (1) + (5) -84.189 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.03 seconds