Wall clock time and date at job start Sat Apr 11 2020 06:56:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81396 * 1
3 3 C 1.81404 * 103.00129 * 2 1
4 4 H 1.09002 * 109.47124 * 304.99736 * 3 2 1
5 5 C 1.53000 * 109.46946 * 64.99967 * 3 2 1
6 6 C 1.50699 * 109.47221 * 184.99873 * 3 2 1
7 7 O 1.21287 * 119.99919 * 339.99624 * 6 3 2
8 8 N 1.34772 * 120.00370 * 159.99890 * 6 3 2
9 9 C 1.46929 * 120.62530 * 0.02562 * 8 6 3
10 10 C 1.53194 * 108.77609 * 126.36866 * 9 8 6
11 11 C 1.53037 * 109.31388 * 54.63338 * 10 9 8
12 12 C 1.53042 * 109.53829 * 298.63489 * 11 10 9
13 13 H 1.09001 * 109.49510 * 301.38467 * 12 11 10
14 14 C 1.53001 * 109.50011 * 181.31654 * 12 11 10
15 15 N 1.46901 * 109.47189 * 65.00230 * 14 12 11
16 16 C 1.46898 * 111.00158 * 180.02562 * 15 14 12
17 17 C 1.50700 * 109.47043 * 179.97438 * 16 15 14
18 18 O 1.21293 * 120.00095 * 359.97438 * 17 16 15
19 19 N 1.34777 * 119.99680 * 179.97438 * 17 16 15
20 20 C 1.37096 * 119.99611 * 180.02562 * 19 17 16
21 21 H 1.08000 * 120.00669 * 359.97438 * 20 19 17
22 22 C 1.38948 * 119.99767 * 179.97438 * 20 19 17
23 23 N 1.31408 * 120.00278 * 359.97438 * 22 20 19
24 24 Si 1.86806 * 120.00142 * 179.97438 * 22 20 19
25 25 H 1.48498 * 109.46743 * 89.99967 * 24 22 20
26 26 H 1.48496 * 109.47342 * 210.00123 * 24 22 20
27 27 H 1.48499 * 109.46944 * 330.00621 * 24 22 20
28 28 C 1.46919 * 120.63485 * 179.71645 * 8 6 3
29 29 H 1.09005 * 109.46706 * 60.00202 * 1 2 3
30 30 H 1.09000 * 109.47351 * 179.97438 * 1 2 3
31 31 H 1.08996 * 109.47195 * 300.00407 * 1 2 3
32 32 H 1.08992 * 109.47399 * 59.99928 * 5 3 2
33 33 H 1.09004 * 109.46724 * 180.02562 * 5 3 2
34 34 H 1.09001 * 109.47194 * 299.99756 * 5 3 2
35 35 H 1.09004 * 109.58348 * 246.15418 * 9 8 6
36 36 H 1.08998 * 109.59367 * 6.43599 * 9 8 6
37 37 H 1.09002 * 109.49792 * 174.58077 * 10 9 8
38 38 H 1.08993 * 109.49496 * 294.64645 * 10 9 8
39 39 H 1.09001 * 109.46152 * 58.65284 * 11 10 9
40 40 H 1.08996 * 109.46442 * 178.61491 * 11 10 9
41 41 H 1.08998 * 109.47260 * 184.99943 * 14 12 11
42 42 H 1.09000 * 109.47280 * 305.00132 * 14 12 11
43 43 H 1.00905 * 110.99647 * 303.95499 * 15 14 12
44 44 H 1.09007 * 109.46705 * 299.99603 * 16 15 14
45 45 H 1.09002 * 109.47169 * 59.99375 * 16 15 14
46 46 H 0.97000 * 119.99971 * 359.97438 * 19 17 16
47 47 H 0.97007 * 120.00299 * 179.97438 * 23 22 20
48 48 H 1.08998 * 109.59049 * 353.42443 * 28 8 6
49 49 H 1.09006 * 109.58403 * 113.84612 * 28 8 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 6 2.2221 1.7675 0.0000
4 1 1.7295 2.2542 -0.8419
5 6 1.7428 2.4016 1.3074
6 6 3.7142 1.9386 -0.1238
7 8 4.4552 1.0199 0.1557
8 7 4.2253 3.1123 -0.5450
9 6 3.3405 4.2345 -0.8866
10 6 3.7784 5.4678 -0.0903
11 6 5.2627 5.7364 -0.3488
12 6 6.0895 4.5382 0.1232
13 1 5.9106 4.3683 1.1849
14 6 7.5756 4.8212 -0.1055
15 7 7.9970 5.9427 0.7447
16 6 9.4216 6.2439 0.5509
17 6 9.8162 7.3973 1.4369
18 8 8.9916 7.9176 2.1584
19 7 11.0854 7.8508 1.4275
20 6 11.4444 8.8997 2.2339
21 1 10.7103 9.3630 2.8764
22 6 12.7530 9.3669 2.2246
23 7 13.6465 8.8029 1.4433
24 14 13.2422 10.7966 3.3229
25 1 13.6996 10.2775 4.6368
26 1 14.3431 11.5594 2.6815
27 1 12.0727 11.6894 3.5234
28 6 5.6780 3.2963 -0.6648
29 1 -0.3633 0.5138 -0.8901
30 1 -0.3634 -1.0276 -0.0005
31 1 -0.3633 0.5139 0.8899
32 1 2.2353 1.9150 2.1491
33 1 1.9876 3.4638 1.3071
34 1 0.6635 2.2779 1.3969
35 1 3.4120 4.4443 -1.9539
36 1 2.3118 3.9793 -0.6325
37 1 3.1923 6.3312 -0.4052
38 1 3.6204 5.2890 0.9732
39 1 5.4234 5.8908 -1.4158
40 1 5.5709 6.6279 0.1973
41 1 8.1574 3.9349 0.1475
42 1 7.7399 5.0771 -1.1522
43 1 7.4287 6.7589 0.5744
44 1 10.0165 5.3675 0.8082
45 1 9.5983 6.5097 -0.4914
46 1 11.7449 7.4344 0.8507
47 1 14.5600 9.1293 1.4365
48 1 6.1914 2.4232 -0.2622
49 1 5.9444 3.4280 -1.7136
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001265600683.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:56:44
Heat of formation + Delta-G solvation = -75.520102 kcal
Electronic energy + Delta-G solvation = -27550.751030 eV
Core-core repulsion = 23638.696361 eV
Total energy + Delta-G solvation = -3912.054669 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.172 amu
Computer time = 4.41 seconds
Orbital eigenvalues (eV)
-40.70043 -38.49924 -37.90131 -35.70530 -34.13574 -33.76469 -32.60642 -31.64605
-31.16265 -29.26464 -27.44059 -26.25420 -25.27819 -24.33365 -23.21744 -22.47917
-20.56179 -19.38695 -19.22727 -17.92523 -17.79171 -17.11275 -16.28113 -15.78116
-15.57155 -15.56264 -15.14245 -14.90332 -14.53135 -14.49822 -14.26832 -14.06007
-13.98195 -13.76229 -13.68794 -13.40028 -13.28080 -13.10242 -12.84859 -12.56991
-12.38308 -12.19732 -12.06508 -11.84614 -11.64881 -11.51222 -11.41381 -11.08850
-11.02587 -10.87962 -10.54727 -10.39410 -10.26659 -10.21698 -10.07624 -9.50688
-8.99022 -8.45351 -8.06382 -8.05466 -7.95442 -6.41358 -3.82251 1.03188
2.06731 2.26127 2.62301 3.18186 3.26701 3.32364 3.91357 3.91810
4.09111 4.28501 4.29770 4.34525 4.46564 4.54444 4.59384 4.65609
4.69463 4.88731 4.93047 4.98863 5.01265 5.07548 5.13393 5.19186
5.25794 5.27430 5.37219 5.42054 5.46182 5.51401 5.58463 5.66786
5.77880 5.81891 5.90564 5.99595 6.04594 6.10629 6.23734 6.29049
6.97278 7.21809 7.55408 7.66564 7.77754 8.06680 8.61688 9.18156
9.54773 10.06211 10.76340
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.031913 B = 0.001637 C = 0.001617
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 877.170868 B =17103.034542 C =17313.414792
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 S -0.188 6.188
3 C -0.094 4.094
4 H 0.107 0.893
5 C -0.145 4.145
6 C 0.536 3.464
7 O -0.517 6.517
8 N -0.604 5.604
9 C 0.102 3.898
10 C -0.134 4.134
11 C -0.120 4.120
12 C -0.099 4.099
13 H 0.087 0.913
14 C 0.066 3.934
15 N -0.668 5.668
16 C 0.050 3.950
17 C 0.441 3.559
18 O -0.584 6.584
19 N -0.564 5.564
20 C -0.300 4.300
21 H 0.103 0.897
22 C 0.022 3.978
23 N -0.902 5.902
24 Si 0.930 3.070
25 H -0.278 1.278
26 H -0.284 1.284
27 H -0.270 1.270
28 C 0.119 3.881
29 H 0.075 0.925
30 H 0.104 0.896
31 H 0.078 0.922
32 H 0.077 0.923
33 H 0.073 0.927
34 H 0.069 0.931
35 H 0.072 0.928
36 H 0.083 0.917
37 H 0.077 0.923
38 H 0.070 0.930
39 H 0.063 0.937
40 H 0.076 0.924
41 H 0.074 0.926
42 H 0.029 0.971
43 H 0.348 0.652
44 H 0.086 0.914
45 H 0.043 0.957
46 H 0.392 0.608
47 H 0.271 0.729
48 H 0.096 0.904
49 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -25.967 -13.136 -9.032 30.470
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.309 4.309
2 S 0.038 5.962
3 C -0.226 4.226
4 H 0.126 0.874
5 C -0.204 4.204
6 C 0.322 3.678
7 O -0.392 6.392
8 N -0.338 5.338
9 C -0.021 4.021
10 C -0.172 4.172
11 C -0.158 4.158
12 C -0.119 4.119
13 H 0.105 0.895
14 C -0.064 4.064
15 N -0.301 5.301
16 C -0.082 4.082
17 C 0.226 3.774
18 O -0.468 6.468
19 N -0.200 5.200
20 C -0.430 4.430
21 H 0.121 0.879
22 C -0.179 4.179
23 N -0.543 5.543
24 Si 0.757 3.243
25 H -0.204 1.204
26 H -0.209 1.209
27 H -0.195 1.195
28 C -0.004 4.004
29 H 0.094 0.906
30 H 0.123 0.877
31 H 0.097 0.903
32 H 0.096 0.904
33 H 0.091 0.909
34 H 0.088 0.912
35 H 0.090 0.910
36 H 0.102 0.898
37 H 0.096 0.904
38 H 0.089 0.911
39 H 0.081 0.919
40 H 0.095 0.905
41 H 0.093 0.907
42 H 0.047 0.953
43 H 0.168 0.832
44 H 0.105 0.895
45 H 0.061 0.939
46 H 0.226 0.774
47 H 0.081 0.919
48 H 0.114 0.886
49 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -25.128 -14.505 -7.884 30.066
hybrid contribution -0.130 2.057 -0.809 2.214
sum -25.258 -12.448 -8.692 29.470
Atomic orbital electron populations
1.23557 0.95668 1.06748 1.04903 1.87515 1.04844 1.06014 1.97845
1.23370 0.97393 0.98375 1.03427 0.87449 1.22061 1.01948 1.01402
0.95030 1.19622 0.88779 0.82453 0.76978 1.90757 1.60308 1.39676
1.48501 1.47952 1.07499 1.12125 1.66231 1.21895 0.93779 0.86529
0.99897 1.21906 0.97223 0.97089 1.00962 1.21623 0.94042 0.98694
1.01402 1.21427 0.94691 0.94250 1.01486 0.89512 1.21891 0.94336
0.95647 0.94543 1.60083 1.03085 1.10208 1.56717 1.21674 0.90072
0.98818 0.97669 1.19816 0.83668 0.86716 0.87182 1.90516 1.50707
1.61051 1.44561 1.41864 1.08482 1.30919 1.38760 1.19707 0.95173
1.08759 1.19321 0.87927 1.25261 0.95521 0.99256 0.97886 1.69613
1.03880 1.42124 1.38670 0.85854 0.78250 0.80601 0.79554 1.20382
1.20944 1.19451 1.21552 0.79221 0.99276 1.00323 0.90571 0.87736
0.90311 0.90359 0.90850 0.91195 0.90970 0.89843 0.90411 0.91108
0.91854 0.90525 0.90745 0.95328 0.83182 0.89547 0.93910 0.77446
0.91876 0.88611 0.91288
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -0.68 10.45 101.05 1.06 0.38 16
2 S -0.19 -1.73 21.04 -107.50 -2.26 -3.99 16
3 C -0.09 -0.73 2.32 -27.88 -0.06 -0.79 16
4 H 0.11 0.59 6.80 -51.92 -0.35 0.23 16
5 C -0.15 -0.89 8.81 37.16 0.33 -0.57 16
6 C 0.54 5.82 6.88 -10.99 -0.08 5.75 16
7 O -0.52 -7.78 15.46 5.55 0.09 -7.70 16
8 N -0.60 -5.43 2.98 -173.05 -0.52 -5.94 16
9 C 0.10 0.61 5.81 -3.71 -0.02 0.59 16
10 C -0.13 -0.90 6.08 -26.61 -0.16 -1.06 16
11 C -0.12 -1.05 4.97 -26.69 -0.13 -1.18 16
12 C -0.10 -1.02 2.53 -90.74 -0.23 -1.25 16
13 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16
14 C 0.07 0.79 5.15 -3.82 -0.02 0.77 16
15 N -0.67 -10.63 6.13 -115.05 -0.70 -11.33 16
16 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16
17 C 0.44 10.46 7.82 -10.98 -0.09 10.37 16
18 O -0.58 -15.90 15.78 5.55 0.09 -15.81 16
19 N -0.56 -14.37 5.29 -10.96 -0.06 -14.43 16
20 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16
21 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16
22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16
23 N -0.90 -24.60 13.05 55.50 0.72 -23.87 16
24 Si 0.93 21.10 29.55 -169.99 -5.02 16.07 16
25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16
26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16
27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16
28 C 0.12 1.16 5.68 -3.96 -0.02 1.14 16
29 H 0.08 0.28 8.14 -51.92 -0.42 -0.14 16
30 H 0.10 0.43 8.14 -51.92 -0.42 0.01 16
31 H 0.08 0.31 7.14 -51.93 -0.37 -0.06 16
32 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16
33 H 0.07 0.39 6.89 -51.93 -0.36 0.03 16
34 H 0.07 0.30 6.92 -51.93 -0.36 -0.06 16
35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16
36 H 0.08 0.35 4.76 -51.93 -0.25 0.10 16
37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16
38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
40 H 0.08 0.79 6.62 -51.93 -0.34 0.45 16
41 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16
42 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16
43 H 0.35 5.61 6.66 -39.29 -0.26 5.35 16
44 H 0.09 1.43 8.14 -51.92 -0.42 1.01 16
45 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16
46 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16
47 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16
48 H 0.10 1.11 7.01 -51.93 -0.36 0.74 16
49 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16
LS Contribution 400.44 15.07 6.03 6.03
Total: -1.00 -34.19 400.44 -9.32 -43.51
By element:
Atomic # 1 Polarization: 18.51 SS G_CDS: -7.99 Total: 10.52 kcal
Atomic # 6 Polarization: 6.64 SS G_CDS: 0.30 Total: 6.94 kcal
Atomic # 7 Polarization: -55.02 SS G_CDS: -0.55 Total: -55.58 kcal
Atomic # 8 Polarization: -23.68 SS G_CDS: 0.17 Total: -23.51 kcal
Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal
Atomic # 16 Polarization: -1.73 SS G_CDS: -2.26 Total: -3.99 kcal
Total LS contribution 6.03 Total: 6.03 kcal
Total: -34.19 -9.32 -43.51 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001265600683.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.014 kcal
(2) G-P(sol) polarization free energy of solvation -34.186 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.201 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.506 kcal
(6) G-S(sol) free energy of system = (1) + (5) -75.520 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 4.41 seconds