Wall clock time and date at job start Sat Apr 11 2020 06:56:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81396 * 1
3 3 C 1.81404 * 103.00129 * 2 1
4 4 H 1.09002 * 109.47124 * 304.99736 * 3 2 1
5 5 C 1.53000 * 109.46946 * 64.99967 * 3 2 1
6 6 C 1.50699 * 109.47221 * 184.99873 * 3 2 1
7 7 O 1.21287 * 119.99919 * 339.99624 * 6 3 2
8 8 N 1.34772 * 120.00370 * 159.99890 * 6 3 2
9 9 C 1.46929 * 120.62530 * 0.02562 * 8 6 3
10 10 C 1.53194 * 108.77609 * 126.36866 * 9 8 6
11 11 C 1.53037 * 109.31388 * 54.63338 * 10 9 8
12 12 C 1.53042 * 109.53829 * 298.63489 * 11 10 9
13 13 H 1.09001 * 109.49510 * 301.38467 * 12 11 10
14 14 C 1.53001 * 109.50011 * 181.31654 * 12 11 10
15 15 N 1.46901 * 109.47189 * 65.00230 * 14 12 11
16 16 C 1.46898 * 111.00158 * 180.02562 * 15 14 12
17 17 C 1.50700 * 109.47043 * 179.97438 * 16 15 14
18 18 O 1.21293 * 120.00095 * 359.97438 * 17 16 15
19 19 N 1.34777 * 119.99680 * 179.97438 * 17 16 15
20 20 C 1.37096 * 119.99611 * 180.02562 * 19 17 16
21 21 H 1.08000 * 120.00669 * 359.97438 * 20 19 17
22 22 C 1.38948 * 119.99767 * 179.97438 * 20 19 17
23 23 N 1.31408 * 120.00278 * 359.97438 * 22 20 19
24 24 Si 1.86806 * 120.00142 * 179.97438 * 22 20 19
25 25 H 1.48498 * 109.46743 * 89.99967 * 24 22 20
26 26 H 1.48496 * 109.47342 * 210.00123 * 24 22 20
27 27 H 1.48499 * 109.46944 * 330.00621 * 24 22 20
28 28 C 1.46919 * 120.63485 * 179.71645 * 8 6 3
29 29 H 1.09005 * 109.46706 * 60.00202 * 1 2 3
30 30 H 1.09000 * 109.47351 * 179.97438 * 1 2 3
31 31 H 1.08996 * 109.47195 * 300.00407 * 1 2 3
32 32 H 1.08992 * 109.47399 * 59.99928 * 5 3 2
33 33 H 1.09004 * 109.46724 * 180.02562 * 5 3 2
34 34 H 1.09001 * 109.47194 * 299.99756 * 5 3 2
35 35 H 1.09004 * 109.58348 * 246.15418 * 9 8 6
36 36 H 1.08998 * 109.59367 * 6.43599 * 9 8 6
37 37 H 1.09002 * 109.49792 * 174.58077 * 10 9 8
38 38 H 1.08993 * 109.49496 * 294.64645 * 10 9 8
39 39 H 1.09001 * 109.46152 * 58.65284 * 11 10 9
40 40 H 1.08996 * 109.46442 * 178.61491 * 11 10 9
41 41 H 1.08998 * 109.47260 * 184.99943 * 14 12 11
42 42 H 1.09000 * 109.47280 * 305.00132 * 14 12 11
43 43 H 1.00905 * 110.99647 * 303.95499 * 15 14 12
44 44 H 1.09007 * 109.46705 * 299.99603 * 16 15 14
45 45 H 1.09002 * 109.47169 * 59.99375 * 16 15 14
46 46 H 0.97000 * 119.99971 * 359.97438 * 19 17 16
47 47 H 0.97007 * 120.00299 * 179.97438 * 23 22 20
48 48 H 1.08998 * 109.59049 * 353.42443 * 28 8 6
49 49 H 1.09006 * 109.58403 * 113.84612 * 28 8 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 6 2.2221 1.7675 0.0000
4 1 1.7295 2.2542 -0.8419
5 6 1.7428 2.4016 1.3074
6 6 3.7142 1.9386 -0.1238
7 8 4.4552 1.0199 0.1557
8 7 4.2253 3.1123 -0.5450
9 6 3.3405 4.2345 -0.8866
10 6 3.7784 5.4678 -0.0903
11 6 5.2627 5.7364 -0.3488
12 6 6.0895 4.5382 0.1232
13 1 5.9106 4.3683 1.1849
14 6 7.5756 4.8212 -0.1055
15 7 7.9970 5.9427 0.7447
16 6 9.4216 6.2439 0.5509
17 6 9.8162 7.3973 1.4369
18 8 8.9916 7.9176 2.1584
19 7 11.0854 7.8508 1.4275
20 6 11.4444 8.8997 2.2339
21 1 10.7103 9.3630 2.8764
22 6 12.7530 9.3669 2.2246
23 7 13.6465 8.8029 1.4433
24 14 13.2422 10.7966 3.3229
25 1 13.6996 10.2775 4.6368
26 1 14.3431 11.5594 2.6815
27 1 12.0727 11.6894 3.5234
28 6 5.6780 3.2963 -0.6648
29 1 -0.3633 0.5138 -0.8901
30 1 -0.3634 -1.0276 -0.0005
31 1 -0.3633 0.5139 0.8899
32 1 2.2353 1.9150 2.1491
33 1 1.9876 3.4638 1.3071
34 1 0.6635 2.2779 1.3969
35 1 3.4120 4.4443 -1.9539
36 1 2.3118 3.9793 -0.6325
37 1 3.1923 6.3312 -0.4052
38 1 3.6204 5.2890 0.9732
39 1 5.4234 5.8908 -1.4158
40 1 5.5709 6.6279 0.1973
41 1 8.1574 3.9349 0.1475
42 1 7.7399 5.0771 -1.1522
43 1 7.4287 6.7589 0.5744
44 1 10.0165 5.3675 0.8082
45 1 9.5983 6.5097 -0.4914
46 1 11.7449 7.4344 0.8507
47 1 14.5600 9.1293 1.4365
48 1 6.1914 2.4232 -0.2622
49 1 5.9444 3.4280 -1.7136
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001265600683.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:56:41
Heat of formation + Delta-G solvation = -100.053708 kcal
Electronic energy + Delta-G solvation = -27551.814887 eV
Core-core repulsion = 23638.696361 eV
Total energy + Delta-G solvation = -3913.118526 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.172 amu
Computer time = 4.77 seconds
Orbital eigenvalues (eV)
-41.46661 -40.18629 -38.96694 -36.83547 -35.90162 -34.76336 -33.42229 -33.21767
-32.40545 -29.65963 -28.80953 -26.96414 -26.69552 -25.38074 -24.31462 -23.22071
-21.43236 -21.05739 -20.08039 -19.91643 -18.55838 -17.83215 -17.81419 -17.06589
-16.59612 -16.46431 -16.31440 -16.09508 -15.71135 -15.52354 -15.41431 -15.09605
-14.90673 -14.58918 -14.48210 -14.23517 -14.19084 -14.13082 -13.74391 -13.52355
-13.31709 -13.17171 -13.04696 -12.97416 -12.84218 -12.77644 -12.66725 -12.42307
-12.12100 -12.10516 -11.84471 -11.69296 -11.51652 -11.32032 -10.92567 -10.77557
-10.36195 -10.02536 -9.73073 -9.32335 -8.73572 -8.47248 -5.96318 0.45688
1.37865 1.41630 1.43191 1.54464 1.63382 1.92197 2.04044 2.28926
2.92529 3.19972 3.29301 3.51978 3.71192 3.76793 3.82576 3.89590
3.94205 4.12352 4.23374 4.32492 4.35183 4.37286 4.38596 4.46333
4.48963 4.53839 4.56343 4.56740 4.62545 4.71327 4.79993 4.81821
4.86128 4.92887 5.08438 5.10564 5.17863 5.28545 5.39972 5.41560
5.46936 5.88163 6.09540 6.25934 6.42445 6.59192 7.00804 7.11605
7.55107 8.10228 8.70064
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.031913 B = 0.001637 C = 0.001617
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 877.170868 B =17103.034542 C =17313.414792
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 S -0.273 6.273
3 C -0.076 4.076
4 H 0.138 0.862
5 C -0.142 4.142
6 C 0.526 3.474
7 O -0.571 6.571
8 N -0.601 5.601
9 C 0.099 3.901
10 C -0.129 4.129
11 C -0.119 4.119
12 C -0.088 4.088
13 H 0.059 0.941
14 C 0.068 3.932
15 N -0.684 5.684
16 C 0.064 3.936
17 C 0.437 3.563
18 O -0.623 6.623
19 N -0.573 5.573
20 C -0.336 4.336
21 H 0.079 0.921
22 C -0.012 4.012
23 N -0.920 5.920
24 Si 0.994 3.006
25 H -0.272 1.272
26 H -0.270 1.270
27 H -0.272 1.272
28 C 0.123 3.877
29 H 0.093 0.907
30 H 0.110 0.890
31 H 0.092 0.908
32 H 0.053 0.947
33 H 0.085 0.915
34 H 0.094 0.906
35 H 0.092 0.908
36 H 0.108 0.892
37 H 0.100 0.900
38 H 0.059 0.941
39 H 0.078 0.922
40 H 0.058 0.942
41 H 0.071 0.929
42 H 0.050 0.950
43 H 0.346 0.654
44 H 0.100 0.900
45 H 0.069 0.931
46 H 0.396 0.604
47 H 0.278 0.722
48 H 0.070 0.930
49 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -27.825 -12.280 -10.462 32.164
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.287 4.287
2 S -0.048 6.048
3 C -0.207 4.207
4 H 0.156 0.844
5 C -0.200 4.200
6 C 0.314 3.686
7 O -0.450 6.450
8 N -0.333 5.333
9 C -0.022 4.022
10 C -0.167 4.167
11 C -0.156 4.156
12 C -0.108 4.108
13 H 0.078 0.922
14 C -0.061 4.061
15 N -0.317 5.317
16 C -0.068 4.068
17 C 0.225 3.775
18 O -0.510 6.510
19 N -0.210 5.210
20 C -0.466 4.466
21 H 0.097 0.903
22 C -0.212 4.212
23 N -0.561 5.561
24 Si 0.817 3.183
25 H -0.198 1.198
26 H -0.194 1.194
27 H -0.197 1.197
28 C -0.001 4.001
29 H 0.112 0.888
30 H 0.129 0.871
31 H 0.111 0.889
32 H 0.072 0.928
33 H 0.104 0.896
34 H 0.113 0.887
35 H 0.110 0.890
36 H 0.126 0.874
37 H 0.119 0.881
38 H 0.078 0.922
39 H 0.097 0.903
40 H 0.077 0.923
41 H 0.090 0.910
42 H 0.068 0.932
43 H 0.166 0.834
44 H 0.118 0.882
45 H 0.087 0.913
46 H 0.230 0.770
47 H 0.087 0.913
48 H 0.089 0.911
49 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges -26.998 -13.645 -9.345 31.661
hybrid contribution 0.408 1.771 -0.374 1.855
sum -26.591 -11.874 -9.719 30.700
Atomic orbital electron populations
1.23578 0.91021 1.07692 1.06418 1.87829 1.10044 1.08864 1.98085
1.23319 0.95108 0.96949 1.05314 0.84418 1.22061 1.03208 1.01540
0.93231 1.20256 0.90083 0.82194 0.76106 1.90730 1.61807 1.41563
1.50860 1.48072 1.07506 1.12543 1.65210 1.22166 0.94274 0.84861
1.00924 1.21889 0.95920 0.98362 1.00569 1.21610 0.95257 0.96873
1.01892 1.21271 0.94081 0.95412 1.00021 0.92241 1.21944 0.95260
0.93968 0.94942 1.60062 1.02065 1.11067 1.58550 1.21531 0.91387
0.96492 0.97391 1.20875 0.82572 0.87273 0.86820 1.90483 1.51613
1.62616 1.46290 1.41934 1.09347 1.30839 1.38860 1.19684 0.95597
1.10536 1.20737 0.90288 1.26049 0.94922 1.01378 0.98871 1.69673
1.04248 1.42965 1.39180 0.84915 0.77948 0.77473 0.77915 1.19778
1.19442 1.19676 1.21425 0.79983 0.97739 1.00921 0.88778 0.87118
0.88931 0.92768 0.89608 0.88686 0.88970 0.87424 0.88125 0.92222
0.90349 0.92315 0.91013 0.93234 0.83418 0.88163 0.91312 0.76966
0.91280 0.91098 0.89467
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.88 10.45 113.37 1.18 0.31 16
2 S -0.27 -4.96 21.04 -56.49 -1.19 -6.15 16
3 C -0.08 -1.05 2.32 29.85 0.07 -0.98 16
4 H 0.14 1.03 6.80 -2.39 -0.02 1.01 16
5 C -0.14 -1.48 8.81 71.98 0.63 -0.85 16
6 C 0.53 11.31 6.88 87.66 0.60 11.91 16
7 O -0.57 -18.07 15.46 -3.05 -0.05 -18.12 16
8 N -0.60 -10.03 2.98 -819.81 -2.44 -12.48 16
9 C 0.10 0.87 5.81 86.36 0.50 1.37 16
10 C -0.13 -1.41 6.08 30.67 0.19 -1.22 16
11 C -0.12 -1.89 4.97 30.62 0.15 -1.74 16
12 C -0.09 -1.78 2.53 -10.87 -0.03 -1.80 16
13 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16
14 C 0.07 1.56 5.15 86.30 0.44 2.01 16
15 N -0.68 -21.54 6.13 -517.92 -3.17 -24.71 16
16 C 0.06 2.23 6.17 85.56 0.53 2.76 16
17 C 0.44 21.03 7.82 87.66 0.69 21.71 16
18 O -0.62 -34.84 15.78 -3.07 -0.05 -34.89 16
19 N -0.57 -29.68 5.29 -306.98 -1.62 -31.30 16
20 C -0.34 -19.25 9.68 84.04 0.81 -18.44 16
21 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16
22 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16
23 N -0.92 -49.84 13.05 21.66 0.28 -49.56 16
24 Si 0.99 43.07 29.55 68.60 2.03 45.09 16
25 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16
26 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16
27 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16
28 C 0.12 2.32 5.68 86.21 0.49 2.81 16
29 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16
30 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16
31 H 0.09 0.44 7.14 -2.39 -0.02 0.42 16
32 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16
33 H 0.09 0.69 6.89 -2.39 -0.02 0.67 16
34 H 0.09 0.52 6.92 -2.39 -0.02 0.51 16
35 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16
36 H 0.11 0.44 4.76 -2.39 -0.01 0.43 16
37 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16
38 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16
39 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16
40 H 0.06 1.17 6.62 -2.39 -0.02 1.16 16
41 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16
42 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16
43 H 0.35 11.12 6.66 -89.69 -0.60 10.52 16
44 H 0.10 3.22 8.14 -2.38 -0.02 3.20 16
45 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16
46 H 0.40 19.49 7.90 -92.71 -0.73 18.76 16
47 H 0.28 14.07 8.31 -92.70 -0.77 13.30 16
48 H 0.07 1.72 7.01 -2.39 -0.02 1.70 16
49 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16
Total: -1.00 -78.02 400.44 0.16 -77.87
By element:
Atomic # 1 Polarization: 36.97 SS G_CDS: -0.36 Total: 36.61 kcal
Atomic # 6 Polarization: 10.91 SS G_CDS: 6.73 Total: 17.64 kcal
Atomic # 7 Polarization: -111.10 SS G_CDS: -6.95 Total: -118.05 kcal
Atomic # 8 Polarization: -52.91 SS G_CDS: -0.10 Total: -53.01 kcal
Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal
Atomic # 16 Polarization: -4.96 SS G_CDS: -1.19 Total: -6.15 kcal
Total: -78.02 0.16 -77.87 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001265600683.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.187 kcal
(2) G-P(sol) polarization free energy of solvation -78.024 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.211 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.158 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.866 kcal
(6) G-S(sol) free energy of system = (1) + (5) -100.054 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 4.77 seconds