Wall clock time and date at job start Sat Apr 11 2020 06:55:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09002 * 109.46901 * 2 1
4 4 C 1.52998 * 109.47292 * 239.99834 * 2 1 3
5 5 N 1.46900 * 109.47418 * 184.99759 * 4 2 1
6 6 C 1.46897 * 111.00184 * 293.95902 * 5 4 2
7 7 C 1.46894 * 111.00018 * 169.99611 * 5 4 2
8 8 H 1.08998 * 109.47801 * 310.00584 * 7 5 4
9 9 C 1.53002 * 109.47032 * 70.00657 * 7 5 4
10 10 C 1.50700 * 109.47070 * 190.00373 * 7 5 4
11 11 O 1.21284 * 120.00080 * 359.97438 * 10 7 5
12 12 N 1.34776 * 120.00023 * 180.02562 * 10 7 5
13 13 C 1.46496 * 120.00252 * 180.02562 * 12 10 7
14 14 C 1.52998 * 117.50113 * 223.74538 * 13 12 10
15 15 C 1.52998 * 117.50499 * 155.08444 * 13 12 10
16 16 N 1.46496 * 109.47234 * 119.99509 * 2 1 3
17 17 C 1.34777 * 120.00258 * 275.00436 * 16 2 1
18 18 O 1.21279 * 120.00166 * 359.97438 * 17 16 2
19 19 C 1.50706 * 119.99762 * 179.97438 * 17 16 2
20 20 S 1.81003 * 109.46853 * 179.97438 * 19 17 16
21 21 C 1.76196 * 99.99846 * 179.97438 * 20 19 17
22 22 H 1.07998 * 120.00030 * 359.97438 * 21 20 19
23 23 C 1.38802 * 119.99637 * 180.02562 * 21 20 19
24 24 N 1.31628 * 120.00513 * 0.02562 * 23 21 20
25 25 Si 1.86806 * 119.99570 * 179.97438 * 23 21 20
26 26 H 1.48506 * 109.46946 * 90.00549 * 25 23 21
27 27 H 1.48504 * 109.46826 * 210.00017 * 25 23 21
28 28 H 1.48496 * 109.47486 * 329.99998 * 25 23 21
29 29 H 1.09001 * 109.47093 * 300.00316 * 1 2 3
30 30 H 1.09002 * 109.47121 * 60.00104 * 1 2 3
31 31 H 1.08994 * 109.47090 * 180.02562 * 1 2 3
32 32 H 1.09001 * 109.47146 * 304.99888 * 4 2 1
33 33 H 1.09006 * 109.46999 * 64.99987 * 4 2 1
34 34 H 1.08998 * 109.47624 * 59.99545 * 6 5 4
35 35 H 1.08998 * 109.46835 * 179.97438 * 6 5 4
36 36 H 1.09007 * 109.46876 * 299.99503 * 6 5 4
37 37 H 1.09000 * 109.47386 * 59.99254 * 9 7 5
38 38 H 1.08994 * 109.47310 * 179.97438 * 9 7 5
39 39 H 1.09000 * 109.46941 * 300.00015 * 9 7 5
40 40 H 0.97005 * 119.99917 * 359.97438 * 12 10 7
41 41 H 1.09003 * 115.55063 * 9.41123 * 13 12 10
42 42 H 1.09000 * 117.49852 * 359.97438 * 14 13 12
43 43 H 1.09005 * 117.50278 * 145.01469 * 14 13 12
44 44 H 1.09001 * 117.50113 * 214.97841 * 15 13 12
45 45 H 1.09005 * 117.49386 * 359.97418 * 15 13 12
46 46 H 0.96999 * 119.99694 * 94.99826 * 16 2 1
47 47 H 1.09000 * 109.47318 * 299.99141 * 19 17 16
48 48 H 1.09000 * 109.47161 * 59.99772 * 19 17 16
49 49 H 0.96995 * 120.00407 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7213 -1.2492
5 7 3.5040 -0.8266 -1.1904
6 6 4.1310 0.4993 -1.2719
7 6 4.0107 -1.7144 -2.2454
8 1 3.4545 -2.6517 -2.2298
9 6 3.8353 -1.0399 -3.6074
10 6 5.4724 -1.9938 -2.0077
11 8 6.0366 -1.5014 -1.0537
12 7 6.1529 -2.7900 -2.8559
13 6 7.5737 -3.0621 -2.6246
14 6 8.5092 -3.0092 -3.8341
15 6 8.1486 -4.3564 -3.2033
16 7 2.0183 -0.6905 1.1962
17 6 2.1470 -0.0181 2.3571
18 8 1.8589 1.1587 2.4115
19 6 2.6488 -0.7287 3.5878
20 16 2.7105 0.4346 4.9731
21 6 3.3121 -0.6309 6.2408
22 1 3.5201 -1.6677 6.0212
23 6 3.5178 -0.1380 7.5220
24 7 3.2629 1.1252 7.7900
25 14 4.1550 -1.2680 8.8662
26 1 5.6395 -1.2306 8.8817
27 1 3.6347 -0.8151 10.1813
28 1 3.6974 -2.6562 8.6042
29 1 -0.3633 0.5139 0.8900
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3633 -1.0276 0.0005
32 1 1.6054 -1.7198 -1.2951
33 1 1.7516 -0.1583 -2.1370
34 1 3.7911 1.1139 -0.4384
35 1 5.2147 0.3922 -1.2257
36 1 3.8524 0.9758 -2.2119
37 1 4.3915 -0.1026 -3.6230
38 1 4.2117 -1.6984 -4.3902
39 1 2.7781 -0.8378 -3.7793
40 1 5.7017 -3.1836 -3.6191
41 1 7.9683 -2.7197 -1.6679
42 1 8.0674 -2.7724 -4.8020
43 1 9.5193 -2.6324 -3.6731
44 1 8.9216 -4.8655 -2.6275
45 1 7.4695 -5.0059 -3.7558
46 1 2.2490 -1.6316 1.1527
47 1 1.9759 -1.5504 3.8327
48 1 3.6480 -1.1212 3.3986
49 1 3.4070 1.4697 8.6852
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001275506931.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:55:27
Heat of formation + Delta-G solvation = -36.668274 kcal
Electronic energy + Delta-G solvation = -27920.517485 eV
Core-core repulsion = 24010.147558 eV
Total energy + Delta-G solvation = -3910.369927 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.172 amu
Computer time = 1.56 seconds
Orbital eigenvalues (eV)
-40.59730 -39.30401 -38.10747 -37.00460 -34.94110 -33.36563 -32.33567 -31.49353
-30.29825 -28.38937 -27.30618 -25.99603 -25.38630 -23.81579 -22.85765 -21.86052
-21.03896 -20.26582 -20.00189 -17.78910 -17.46153 -17.04412 -16.34440 -16.18401
-15.89813 -15.35195 -14.95132 -14.78403 -14.72082 -14.60189 -14.48128 -14.06044
-13.87959 -13.36905 -13.17192 -13.04950 -12.82340 -12.66490 -12.57780 -12.33472
-12.10942 -12.04742 -11.96857 -11.87131 -11.74867 -11.57120 -11.40201 -10.98946
-10.96833 -10.92775 -10.82633 -10.67510 -9.89499 -9.71025 -9.19334 -9.12870
-8.97736 -8.65262 -8.51547 -8.11131 -6.37941 -6.12467 -3.81334 2.30995
2.56548 3.17944 3.28788 3.31578 3.34846 3.41084 3.47043 3.61964
3.92319 4.24373 4.29960 4.32440 4.44526 4.51245 4.53562 4.59313
4.74105 4.92687 5.02911 5.10522 5.15146 5.22412 5.26597 5.29655
5.32921 5.34782 5.38727 5.41134 5.50749 5.57461 5.59880 5.63666
5.66338 5.80929 6.02881 6.07267 6.10451 6.18926 6.22192 6.32885
6.67956 6.74064 6.94150 7.13838 7.69072 7.96211 7.98576 8.44951
8.84959 9.32888 10.95025
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.010199 B = 0.002534 C = 0.002113
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2744.638933 B =11045.663811 C =13246.653506
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.148 3.852
3 H 0.087 0.913
4 C 0.047 3.953
5 N -0.512 5.512
6 C 0.014 3.986
7 C 0.065 3.935
8 H 0.108 0.892
9 C -0.185 4.185
10 C 0.521 3.479
11 O -0.506 6.506
12 N -0.707 5.707
13 C 0.083 3.917
14 C -0.195 4.195
15 C -0.190 4.190
16 N -0.717 5.717
17 C 0.536 3.464
18 O -0.526 6.526
19 C -0.151 4.151
20 S -0.062 6.062
21 C -0.532 4.532
22 H 0.072 0.928
23 C 0.072 3.928
24 N -0.869 5.869
25 Si 0.918 3.082
26 H -0.277 1.277
27 H -0.283 1.283
28 H -0.272 1.272
29 H 0.068 0.932
30 H 0.060 0.940
31 H 0.056 0.944
32 H 0.080 0.920
33 H 0.050 0.950
34 H 0.075 0.925
35 H 0.085 0.915
36 H 0.024 0.976
37 H 0.068 0.932
38 H 0.064 0.936
39 H 0.070 0.930
40 H 0.399 0.601
41 H 0.139 0.861
42 H 0.095 0.905
43 H 0.102 0.898
44 H 0.104 0.896
45 H 0.096 0.904
46 H 0.399 0.601
47 H 0.086 0.914
48 H 0.090 0.910
49 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.397 -10.924 -30.559 32.542
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C 0.042 3.958
3 H 0.105 0.895
4 C -0.082 4.082
5 N -0.235 5.235
6 C -0.133 4.133
7 C -0.047 4.047
8 H 0.126 0.874
9 C -0.244 4.244
10 C 0.306 3.694
11 O -0.379 6.379
12 N -0.359 5.359
13 C -0.024 4.024
14 C -0.234 4.234
15 C -0.228 4.228
16 N -0.371 5.371
17 C 0.322 3.678
18 O -0.401 6.401
19 C -0.302 4.302
20 S 0.165 5.835
21 C -0.680 4.680
22 H 0.090 0.910
23 C -0.137 4.137
24 N -0.504 5.504
25 Si 0.744 3.256
26 H -0.203 1.203
27 H -0.208 1.208
28 H -0.197 1.197
29 H 0.087 0.913
30 H 0.079 0.921
31 H 0.075 0.925
32 H 0.098 0.902
33 H 0.068 0.932
34 H 0.094 0.906
35 H 0.104 0.896
36 H 0.043 0.957
37 H 0.087 0.913
38 H 0.083 0.917
39 H 0.089 0.911
40 H 0.233 0.767
41 H 0.157 0.843
42 H 0.114 0.886
43 H 0.120 0.880
44 H 0.122 0.878
45 H 0.115 0.885
46 H 0.233 0.767
47 H 0.105 0.895
48 H 0.108 0.892
49 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 2.428 -8.626 -29.138 30.485
hybrid contribution 0.485 -2.508 -0.525 2.608
sum 2.913 -11.133 -29.664 31.818
Atomic orbital electron populations
1.22167 0.95215 1.02060 1.02725 1.20820 0.93394 0.97649 0.83889
0.89534 1.22528 0.87304 1.01226 0.97110 1.61819 1.04868 1.12579
1.44185 1.22634 1.01758 0.88786 1.00158 1.21641 0.93091 0.98960
0.91027 0.87419 1.22440 1.03309 1.02239 0.96417 1.20507 0.88634
0.78121 0.82105 1.90747 1.69731 1.48845 1.28547 1.45390 1.09562
1.51083 1.29838 1.21598 0.81005 1.00845 0.98909 1.23435 1.01160
1.00720 0.98037 1.23386 1.03901 0.91235 1.04325 1.45793 1.68579
1.13965 1.08731 1.20212 0.76634 0.87126 0.83848 1.90675 1.48983
1.15807 1.84649 1.23508 1.03723 1.04606 0.98356 1.85328 1.86233
1.13181 0.98807 1.22881 1.50706 0.98119 0.96338 0.91006 1.24985
0.95206 0.95527 0.97937 1.70022 1.45766 1.13229 1.21429 0.86184
0.79014 0.80237 0.80152 1.20305 1.20831 1.19729 0.91304 0.92122
0.92523 0.90182 0.93210 0.90587 0.89610 0.95744 0.91284 0.91683
0.91100 0.76713 0.84339 0.88625 0.87963 0.87800 0.88527 0.76657
0.89548 0.89213 0.92302
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.75 9.48 37.16 0.35 -1.39 16
2 C 0.15 1.77 2.35 -67.93 -0.16 1.61 16
3 H 0.09 1.24 6.23 -51.93 -0.32 0.92 16
4 C 0.05 0.39 4.09 -3.83 -0.02 0.38 16
5 N -0.51 -5.19 4.17 -236.29 -0.99 -6.17 16
6 C 0.01 0.16 8.27 60.06 0.50 0.66 16
7 C 0.07 0.49 2.73 -68.87 -0.19 0.30 16
8 H 0.11 0.61 7.93 -51.93 -0.41 0.19 16
9 C -0.18 -0.97 8.34 37.16 0.31 -0.66 16
10 C 0.52 5.13 6.85 -10.99 -0.08 5.06 16
11 O -0.51 -7.46 13.90 5.55 0.08 -7.39 16
12 N -0.71 -4.83 5.46 -53.81 -0.29 -5.12 16
13 C 0.08 0.61 6.43 -67.93 -0.44 0.17 16
14 C -0.19 -1.05 10.46 -26.70 -0.28 -1.33 16
15 C -0.19 -0.99 10.46 -26.70 -0.28 -1.26 16
16 N -0.72 -10.34 4.80 -53.81 -0.26 -10.60 16
17 C 0.54 10.60 7.81 -10.98 -0.09 10.51 16
18 O -0.53 -12.36 15.52 5.56 0.09 -12.27 16
19 C -0.15 -3.28 6.16 36.01 0.22 -3.06 16
20 S -0.06 -1.76 20.57 -107.50 -2.21 -3.97 16
21 C -0.53 -15.77 9.50 30.94 0.29 -15.47 16
22 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16
23 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16
24 N -0.87 -26.97 13.22 55.49 0.73 -26.24 16
25 Si 0.92 22.14 29.55 -169.99 -5.02 17.12 16
26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
28 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16
29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16
30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
32 H 0.08 0.55 7.93 -51.93 -0.41 0.14 16
33 H 0.05 0.35 7.06 -51.93 -0.37 -0.01 16
34 H 0.08 1.05 6.58 -51.93 -0.34 0.71 16
35 H 0.09 1.16 5.82 -51.93 -0.30 0.86 16
36 H 0.02 0.23 6.46 -51.93 -0.34 -0.10 16
37 H 0.07 0.46 6.42 -51.93 -0.33 0.12 16
38 H 0.06 0.21 7.56 -51.93 -0.39 -0.18 16
39 H 0.07 0.33 6.91 -51.93 -0.36 -0.03 16
40 H 0.40 1.53 8.24 -40.82 -0.34 1.19 16
41 H 0.14 1.33 7.40 -51.93 -0.38 0.95 16
42 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16
43 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16
44 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16
45 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16
46 H 0.40 5.00 8.60 -40.82 -0.35 4.65 16
47 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16
48 H 0.09 1.89 8.14 -51.92 -0.42 1.46 16
49 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16
LS Contribution 409.49 15.07 6.17 6.17
Total: -1.00 -37.67 409.49 -9.64 -47.31
By element:
Atomic # 1 Polarization: 11.62 SS G_CDS: -8.00 Total: 3.62 kcal
Atomic # 6 Polarization: -2.51 SS G_CDS: 0.06 Total: -2.45 kcal
Atomic # 7 Polarization: -47.34 SS G_CDS: -0.80 Total: -48.14 kcal
Atomic # 8 Polarization: -19.82 SS G_CDS: 0.16 Total: -19.66 kcal
Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal
Atomic # 16 Polarization: -1.76 SS G_CDS: -2.21 Total: -3.97 kcal
Total LS contribution 6.17 Total: 6.17 kcal
Total: -37.67 -9.64 -47.31 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001275506931.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.645 kcal
(2) G-P(sol) polarization free energy of solvation -37.669 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.024 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.313 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.668 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.56 seconds