Wall clock time and date at job start Sat Apr 11 2020 06:55:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09002 * 109.46901 * 2 1
4 4 C 1.52998 * 109.47292 * 239.99834 * 2 1 3
5 5 N 1.46900 * 109.47418 * 184.99759 * 4 2 1
6 6 C 1.46897 * 111.00184 * 293.95902 * 5 4 2
7 7 C 1.46894 * 111.00018 * 169.99611 * 5 4 2
8 8 H 1.08998 * 109.47801 * 310.00584 * 7 5 4
9 9 C 1.53002 * 109.47032 * 70.00657 * 7 5 4
10 10 C 1.50700 * 109.47070 * 190.00373 * 7 5 4
11 11 O 1.21284 * 120.00080 * 359.97438 * 10 7 5
12 12 N 1.34776 * 120.00023 * 180.02562 * 10 7 5
13 13 C 1.46496 * 120.00252 * 180.02562 * 12 10 7
14 14 C 1.52998 * 117.50113 * 223.74538 * 13 12 10
15 15 C 1.52998 * 117.50499 * 155.08444 * 13 12 10
16 16 N 1.46496 * 109.47234 * 119.99509 * 2 1 3
17 17 C 1.34777 * 120.00258 * 275.00436 * 16 2 1
18 18 O 1.21279 * 120.00166 * 359.97438 * 17 16 2
19 19 C 1.50706 * 119.99762 * 179.97438 * 17 16 2
20 20 S 1.81003 * 109.46853 * 179.97438 * 19 17 16
21 21 C 1.76196 * 99.99846 * 179.97438 * 20 19 17
22 22 H 1.07998 * 120.00030 * 359.97438 * 21 20 19
23 23 C 1.38802 * 119.99637 * 180.02562 * 21 20 19
24 24 N 1.31628 * 120.00513 * 0.02562 * 23 21 20
25 25 Si 1.86806 * 119.99570 * 179.97438 * 23 21 20
26 26 H 1.48506 * 109.46946 * 90.00549 * 25 23 21
27 27 H 1.48504 * 109.46826 * 210.00017 * 25 23 21
28 28 H 1.48496 * 109.47486 * 329.99998 * 25 23 21
29 29 H 1.09001 * 109.47093 * 300.00316 * 1 2 3
30 30 H 1.09002 * 109.47121 * 60.00104 * 1 2 3
31 31 H 1.08994 * 109.47090 * 180.02562 * 1 2 3
32 32 H 1.09001 * 109.47146 * 304.99888 * 4 2 1
33 33 H 1.09006 * 109.46999 * 64.99987 * 4 2 1
34 34 H 1.08998 * 109.47624 * 59.99545 * 6 5 4
35 35 H 1.08998 * 109.46835 * 179.97438 * 6 5 4
36 36 H 1.09007 * 109.46876 * 299.99503 * 6 5 4
37 37 H 1.09000 * 109.47386 * 59.99254 * 9 7 5
38 38 H 1.08994 * 109.47310 * 179.97438 * 9 7 5
39 39 H 1.09000 * 109.46941 * 300.00015 * 9 7 5
40 40 H 0.97005 * 119.99917 * 359.97438 * 12 10 7
41 41 H 1.09003 * 115.55063 * 9.41123 * 13 12 10
42 42 H 1.09000 * 117.49852 * 359.97438 * 14 13 12
43 43 H 1.09005 * 117.50278 * 145.01469 * 14 13 12
44 44 H 1.09001 * 117.50113 * 214.97841 * 15 13 12
45 45 H 1.09005 * 117.49386 * 359.97418 * 15 13 12
46 46 H 0.96999 * 119.99694 * 94.99826 * 16 2 1
47 47 H 1.09000 * 109.47318 * 299.99141 * 19 17 16
48 48 H 1.09000 * 109.47161 * 59.99772 * 19 17 16
49 49 H 0.96995 * 120.00407 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7213 -1.2492
5 7 3.5040 -0.8266 -1.1904
6 6 4.1310 0.4993 -1.2719
7 6 4.0107 -1.7144 -2.2454
8 1 3.4545 -2.6517 -2.2298
9 6 3.8353 -1.0399 -3.6074
10 6 5.4724 -1.9938 -2.0077
11 8 6.0366 -1.5014 -1.0537
12 7 6.1529 -2.7900 -2.8559
13 6 7.5737 -3.0621 -2.6246
14 6 8.5092 -3.0092 -3.8341
15 6 8.1486 -4.3564 -3.2033
16 7 2.0183 -0.6905 1.1962
17 6 2.1470 -0.0181 2.3571
18 8 1.8589 1.1587 2.4115
19 6 2.6488 -0.7287 3.5878
20 16 2.7105 0.4346 4.9731
21 6 3.3121 -0.6309 6.2408
22 1 3.5201 -1.6677 6.0212
23 6 3.5178 -0.1380 7.5220
24 7 3.2629 1.1252 7.7900
25 14 4.1550 -1.2680 8.8662
26 1 5.6395 -1.2306 8.8817
27 1 3.6347 -0.8151 10.1813
28 1 3.6974 -2.6562 8.6042
29 1 -0.3633 0.5139 0.8900
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3633 -1.0276 0.0005
32 1 1.6054 -1.7198 -1.2951
33 1 1.7516 -0.1583 -2.1370
34 1 3.7911 1.1139 -0.4384
35 1 5.2147 0.3922 -1.2257
36 1 3.8524 0.9758 -2.2119
37 1 4.3915 -0.1026 -3.6230
38 1 4.2117 -1.6984 -4.3902
39 1 2.7781 -0.8378 -3.7793
40 1 5.7017 -3.1836 -3.6191
41 1 7.9683 -2.7197 -1.6679
42 1 8.0674 -2.7724 -4.8020
43 1 9.5193 -2.6324 -3.6731
44 1 8.9216 -4.8655 -2.6275
45 1 7.4695 -5.0059 -3.7558
46 1 2.2490 -1.6316 1.1527
47 1 1.9759 -1.5504 3.8327
48 1 3.6480 -1.1212 3.3986
49 1 3.4070 1.4697 8.6852
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001275506931.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:55:25
Heat of formation + Delta-G solvation = -66.331063 kcal
Electronic energy + Delta-G solvation = -27921.803760 eV
Core-core repulsion = 24010.147558 eV
Total energy + Delta-G solvation = -3911.656202 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.172 amu
Computer time = 1.49 seconds
Orbital eigenvalues (eV)
-41.34409 -40.62478 -38.91367 -37.77523 -36.05745 -34.58835 -34.06078 -32.74045
-31.01201 -29.93339 -28.14158 -27.66008 -26.58700 -24.58869 -23.27362 -22.65532
-21.99279 -21.34863 -20.92531 -19.82150 -18.24458 -17.84216 -17.67294 -17.10296
-16.88820 -16.88089 -16.28531 -16.05317 -15.95787 -15.65558 -15.30293 -15.21720
-14.73952 -14.62560 -14.56308 -14.11507 -13.92115 -13.64550 -13.33905 -13.22139
-13.16356 -13.10875 -12.91617 -12.89045 -12.75051 -12.63759 -12.56992 -12.43962
-12.27213 -12.16983 -11.75349 -11.68047 -11.46600 -11.14674 -10.84618 -10.67691
-10.27829 -9.96640 -9.71712 -9.22583 -8.66029 -8.34675 -6.12477 1.27562
1.41694 1.46911 1.58376 1.61772 1.72115 1.98231 2.27040 2.40457
2.93460 2.98819 2.99444 3.34457 3.67006 3.75666 3.83297 4.03674
4.05092 4.06980 4.08052 4.18206 4.20532 4.29911 4.34550 4.42902
4.49236 4.51930 4.60968 4.70759 4.76020 4.79216 4.80696 4.83585
4.87232 5.01933 5.07902 5.16105 5.20433 5.21039 5.32568 5.41028
5.55644 5.63834 5.96363 6.06697 6.19650 6.59534 6.64802 7.06021
7.32879 7.37592 8.74778
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.010199 B = 0.002534 C = 0.002113
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2744.638933 B =11045.663811 C =13246.653506
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C 0.143 3.857
3 H 0.056 0.944
4 C 0.056 3.944
5 N -0.534 5.534
6 C 0.026 3.974
7 C 0.070 3.930
8 H 0.138 0.862
9 C -0.178 4.178
10 C 0.514 3.486
11 O -0.568 6.568
12 N -0.689 5.689
13 C 0.052 3.948
14 C -0.184 4.184
15 C -0.172 4.172
16 N -0.692 5.692
17 C 0.535 3.465
18 O -0.571 6.571
19 C -0.127 4.127
20 S -0.150 6.150
21 C -0.547 4.547
22 H 0.079 0.921
23 C 0.012 3.988
24 N -0.911 5.911
25 Si 1.000 3.000
26 H -0.269 1.269
27 H -0.275 1.275
28 H -0.258 1.258
29 H 0.030 0.970
30 H 0.087 0.913
31 H 0.078 0.922
32 H 0.111 0.889
33 H 0.076 0.924
34 H 0.042 0.958
35 H 0.060 0.940
36 H 0.046 0.954
37 H 0.050 0.950
38 H 0.090 0.910
39 H 0.087 0.913
40 H 0.416 0.584
41 H 0.105 0.895
42 H 0.110 0.890
43 H 0.101 0.899
44 H 0.105 0.895
45 H 0.115 0.885
46 H 0.413 0.587
47 H 0.107 0.893
48 H 0.097 0.903
49 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.774 -14.411 -33.451 36.466
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C 0.038 3.962
3 H 0.075 0.925
4 C -0.071 4.071
5 N -0.258 5.258
6 C -0.122 4.122
7 C -0.042 4.042
8 H 0.156 0.844
9 C -0.237 4.237
10 C 0.301 3.699
11 O -0.445 6.445
12 N -0.341 5.341
13 C -0.055 4.055
14 C -0.223 4.223
15 C -0.211 4.211
16 N -0.344 5.344
17 C 0.321 3.679
18 O -0.450 6.450
19 C -0.279 4.279
20 S 0.077 5.923
21 C -0.695 4.695
22 H 0.098 0.902
23 C -0.193 4.193
24 N -0.548 5.548
25 Si 0.821 3.179
26 H -0.194 1.194
27 H -0.200 1.200
28 H -0.182 1.182
29 H 0.050 0.950
30 H 0.106 0.894
31 H 0.097 0.903
32 H 0.130 0.870
33 H 0.094 0.906
34 H 0.061 0.939
35 H 0.078 0.922
36 H 0.064 0.936
37 H 0.069 0.931
38 H 0.108 0.892
39 H 0.105 0.895
40 H 0.254 0.746
41 H 0.123 0.877
42 H 0.129 0.871
43 H 0.119 0.881
44 H 0.124 0.876
45 H 0.134 0.866
46 H 0.249 0.751
47 H 0.125 0.875
48 H 0.115 0.885
49 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges 1.796 -12.185 -32.132 34.412
hybrid contribution 0.712 -1.460 0.215 1.639
sum 2.508 -13.645 -31.917 34.802
Atomic orbital electron populations
1.22093 0.93754 1.03307 1.02249 1.21073 0.94474 0.96534 0.84137
0.92538 1.22508 0.86208 1.02795 0.95598 1.61686 1.05817 1.11851
1.46417 1.22370 1.00203 0.89788 0.99819 1.21740 0.91384 0.99702
0.91335 0.84410 1.22404 1.04223 1.01658 0.95418 1.21093 0.89763
0.77562 0.81483 1.90733 1.71127 1.51378 1.31302 1.45220 1.09285
1.49931 1.29653 1.21524 0.81684 1.03556 0.98698 1.23488 1.00553
1.00691 0.97536 1.23458 1.03510 0.90753 1.03336 1.45603 1.66581
1.14354 1.07892 1.19917 0.76707 0.86526 0.84764 1.90660 1.51368
1.17624 1.85375 1.23346 1.04846 1.03173 0.96507 1.85485 1.86620
1.17502 1.02652 1.23196 1.51064 0.98327 0.96864 0.90240 1.26156
0.95050 0.97310 1.00741 1.70185 1.46804 1.15494 1.22299 0.84939
0.78449 0.78178 0.76300 1.19413 1.19962 1.18171 0.95027 0.89396
0.90313 0.87043 0.90620 0.93886 0.92173 0.93584 0.93067 0.89162
0.89457 0.74587 0.87671 0.87147 0.88056 0.87643 0.86645 0.75104
0.87488 0.88509 0.91967
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.04 9.48 71.98 0.68 -2.35 16
2 C 0.14 3.24 2.35 44.99 0.11 3.35 16
3 H 0.06 1.67 6.23 -2.39 -0.01 1.65 16
4 C 0.06 0.77 4.09 86.30 0.35 1.12 16
5 N -0.53 -9.98 4.17 -901.48 -3.76 -13.75 16
6 C 0.03 0.63 8.27 127.69 1.06 1.68 16
7 C 0.07 0.85 2.73 44.17 0.12 0.97 16
8 H 0.14 0.88 7.93 -2.39 -0.02 0.86 16
9 C -0.18 -1.19 8.34 71.98 0.60 -0.59 16
10 C 0.51 9.75 6.85 87.66 0.60 10.35 16
11 O -0.57 -17.62 13.90 -3.04 -0.04 -17.67 16
12 N -0.69 -8.31 5.46 -442.54 -2.42 -10.73 16
13 C 0.05 0.74 6.43 44.99 0.29 1.03 16
14 C -0.18 -1.70 10.46 30.62 0.32 -1.38 16
15 C -0.17 -1.45 10.46 30.62 0.32 -1.13 16
16 N -0.69 -19.55 4.80 -442.54 -2.12 -21.68 16
17 C 0.54 21.77 7.81 87.66 0.68 22.45 16
18 O -0.57 -28.31 15.52 -3.03 -0.05 -28.36 16
19 C -0.13 -5.64 6.16 71.24 0.44 -5.20 16
20 S -0.15 -8.86 20.57 -56.49 -1.16 -10.03 16
21 C -0.55 -33.01 9.50 67.96 0.65 -32.36 16
22 H 0.08 4.50 7.80 -2.91 -0.02 4.48 16
23 C 0.01 0.71 5.49 84.86 0.47 1.18 16
24 N -0.91 -58.10 13.22 21.65 0.29 -57.82 16
25 Si 1.00 45.58 29.55 68.60 2.03 47.61 16
26 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16
27 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16
28 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16
29 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16
30 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16
31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16
32 H 0.11 0.91 7.93 -2.39 -0.02 0.89 16
33 H 0.08 0.72 7.06 -2.38 -0.02 0.70 16
34 H 0.04 1.28 6.58 -2.39 -0.02 1.27 16
35 H 0.06 1.75 5.82 -2.39 -0.01 1.74 16
36 H 0.05 0.85 6.46 -2.38 -0.02 0.83 16
37 H 0.05 0.56 6.42 -2.39 -0.02 0.54 16
38 H 0.09 0.17 7.56 -2.39 -0.02 0.15 16
39 H 0.09 0.35 6.91 -2.39 -0.02 0.34 16
40 H 0.42 1.83 8.24 -92.70 -0.76 1.07 16
41 H 0.11 2.23 7.40 -2.39 -0.02 2.22 16
42 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16
43 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16
44 H 0.11 0.86 8.14 -2.39 -0.02 0.85 16
45 H 0.12 0.55 8.14 -2.38 -0.02 0.53 16
46 H 0.41 9.56 8.60 -92.71 -0.80 8.76 16
47 H 0.11 4.25 8.14 -2.39 -0.02 4.23 16
48 H 0.10 4.12 8.14 -2.40 -0.02 4.10 16
49 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16
Total: -1.00 -89.64 409.49 -1.15 -90.78
By element:
Atomic # 1 Polarization: 23.10 SS G_CDS: -0.59 Total: 22.51 kcal
Atomic # 6 Polarization: -7.57 SS G_CDS: 6.68 Total: -0.89 kcal
Atomic # 7 Polarization: -95.95 SS G_CDS: -8.01 Total: -103.97 kcal
Atomic # 8 Polarization: -45.93 SS G_CDS: -0.09 Total: -46.02 kcal
Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal
Atomic # 16 Polarization: -8.86 SS G_CDS: -1.16 Total: -10.03 kcal
Total: -89.64 -1.15 -90.78 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001275506931.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.453 kcal
(2) G-P(sol) polarization free energy of solvation -89.637 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.184 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.147 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.784 kcal
(6) G-S(sol) free energy of system = (1) + (5) -66.331 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.49 seconds