Wall clock time and date at job start Sat Apr 11 2020 06:55:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09001 * 109.47273 * 2 1
4 4 C 1.52996 * 109.47179 * 120.00180 * 2 1 3
5 5 N 1.46500 * 109.47368 * 175.00014 * 4 2 1
6 6 C 1.34779 * 120.00165 * 179.97438 * 5 4 2
7 7 O 1.21282 * 119.99927 * 0.02562 * 6 5 4
8 8 C 1.50699 * 120.00033 * 179.97438 * 6 5 4
9 9 C 1.53006 * 109.46866 * 180.02562 * 8 6 5
10 10 H 1.08999 * 110.62925 * 56.65534 * 9 8 6
11 11 C 1.55144 * 110.70203 * 179.97438 * 9 8 6
12 12 C 1.54905 * 101.64740 * 154.03433 * 11 9 8
13 13 N 1.47837 * 104.80363 * 322.92776 * 12 11 9
14 14 C 1.46899 * 111.00417 * 146.36079 * 13 12 11
15 15 C 1.47447 * 108.56219 * 24.09776 * 13 12 11
16 16 N 1.46499 * 109.47482 * 240.00179 * 2 1 3
17 17 C 1.34775 * 120.00223 * 84.99733 * 16 2 1
18 18 O 1.21288 * 119.99919 * 0.02562 * 17 16 2
19 19 C 1.50702 * 120.00298 * 180.02562 * 17 16 2
20 20 S 1.81000 * 109.47196 * 180.02562 * 19 17 16
21 21 C 1.76202 * 99.99674 * 179.97438 * 20 19 17
22 22 H 1.07994 * 120.00324 * 359.97438 * 21 20 19
23 23 C 1.38806 * 119.99497 * 180.02562 * 21 20 19
24 24 N 1.31635 * 119.99678 * 180.02562 * 23 21 20
25 25 Si 1.86793 * 120.00183 * 359.97438 * 23 21 20
26 26 H 1.48506 * 109.46966 * 90.00542 * 25 23 21
27 27 H 1.48496 * 109.47093 * 210.00207 * 25 23 21
28 28 H 1.48500 * 109.47593 * 330.00700 * 25 23 21
29 29 H 1.08997 * 109.46828 * 179.97438 * 1 2 3
30 30 H 1.08992 * 109.47188 * 300.00092 * 1 2 3
31 31 H 1.09002 * 109.46911 * 59.99929 * 1 2 3
32 32 H 1.08996 * 109.47261 * 54.99687 * 4 2 1
33 33 H 1.09004 * 109.47368 * 295.00071 * 4 2 1
34 34 H 0.96996 * 119.99985 * 0.02562 * 5 4 2
35 35 H 1.08993 * 109.47512 * 60.00410 * 8 6 5
36 36 H 1.09000 * 109.47247 * 300.00119 * 8 6 5
37 37 H 1.09003 * 110.99119 * 272.12699 * 11 9 8
38 38 H 1.08993 * 110.98925 * 35.94508 * 11 9 8
39 39 H 1.09003 * 110.37066 * 204.09491 * 12 11 9
40 40 H 1.09000 * 110.46787 * 81.81407 * 12 11 9
41 41 H 1.08995 * 109.47036 * 299.16522 * 14 13 12
42 42 H 1.08998 * 109.46983 * 59.15924 * 14 13 12
43 43 H 1.08997 * 109.47107 * 179.16176 * 14 13 12
44 44 H 1.09000 * 109.89072 * 239.60089 * 15 13 12
45 45 H 1.09007 * 110.02565 * 118.48872 * 15 13 12
46 46 H 0.97001 * 119.99715 * 265.00571 * 16 2 1
47 47 H 1.09004 * 109.46618 * 300.00073 * 19 17 16
48 48 H 1.08999 * 109.47317 * 59.99455 * 19 17 16
49 49 H 0.96994 * 119.99896 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0400 -0.7213 1.2492
5 7 3.5000 -0.8264 1.1906
6 6 4.1731 -1.4283 2.1912
7 8 3.5700 -1.8834 3.1399
8 6 5.6749 -1.5370 2.1305
9 6 6.1849 -2.2582 3.3799
10 1 5.7159 -3.2374 3.4764
11 6 7.7307 -2.3865 3.3466
12 6 8.0698 -2.4742 4.8555
13 7 7.1157 -1.5548 5.5112
14 6 6.7334 -2.0521 6.8395
15 6 5.9338 -1.4067 4.6421
16 7 2.0184 -0.6905 -1.1962
17 6 2.1471 -0.0182 -2.3571
18 8 1.8590 1.1587 -2.4115
19 6 2.6490 -0.7287 -3.5877
20 16 2.7107 0.4346 -4.9730
21 6 3.3139 -0.6307 -6.2404
22 1 3.5232 -1.6671 -6.0204
23 6 3.5210 -0.1375 -7.5212
24 7 3.9712 -0.9334 -8.4681
25 14 3.1597 1.6553 -7.9015
26 1 4.3788 2.4681 -7.6597
27 1 2.7508 1.7871 -9.3229
28 1 2.0623 2.1361 -7.0241
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3633 0.5138 0.8899
31 1 -0.3633 0.5139 -0.8900
32 1 1.6054 -1.7198 1.2951
33 1 1.7516 -0.1584 2.1370
34 1 3.9824 -0.4622 0.4320
35 1 6.1099 -0.5387 2.0840
36 1 5.9629 -2.1006 1.2431
37 1 8.0361 -3.2932 2.8243
38 1 8.1859 -1.5052 2.8947
39 1 9.0945 -2.1482 5.0337
40 1 7.9275 -3.4917 5.2196
41 1 6.2500 -3.0238 6.7383
42 1 7.6238 -2.1521 7.4601
43 1 6.0426 -1.3494 7.3056
44 1 5.8065 -0.3604 4.3644
45 1 5.0432 -1.7639 5.1592
46 1 2.2490 -1.6317 -1.1526
47 1 3.6482 -1.1212 -3.3985
48 1 1.9762 -1.5506 -3.8326
49 1 4.1163 -0.5887 -9.3630
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001533997738.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:55:43
Heat of formation + Delta-G solvation = -82.125856 kcal
Electronic energy + Delta-G solvation = -27182.656619 eV
Core-core repulsion = 23270.315503 eV
Total energy + Delta-G solvation = -3912.341116 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.172 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-40.48586 -39.63642 -38.84468 -36.49456 -33.93578 -33.67442 -32.48525 -31.65641
-30.35139 -28.81249 -28.01772 -26.43152 -25.66199 -24.95871 -21.99014 -21.43966
-21.19337 -20.54054 -20.19469 -18.05710 -17.37560 -16.81764 -16.70048 -16.60056
-15.85148 -15.57436 -15.46119 -15.10385 -14.99086 -14.53142 -14.30602 -14.07130
-13.70765 -13.59524 -13.45420 -13.22301 -13.06443 -13.02246 -12.83965 -12.78097
-12.22482 -12.17759 -12.03806 -11.94141 -11.70342 -11.57482 -11.31999 -11.26638
-11.15094 -11.05018 -11.03391 -10.65821 -10.10313 -9.90687 -9.64880 -9.40654
-9.18098 -9.04315 -8.67934 -8.56266 -6.97665 -6.33450 -4.05853 2.35089
2.65449 2.79946 2.88149 3.23783 3.29551 3.46270 3.58198 3.67533
4.11878 4.25611 4.28495 4.31578 4.44153 4.59844 4.67342 4.80620
4.87929 4.95759 5.01320 5.04350 5.05673 5.06375 5.11122 5.17890
5.24842 5.28188 5.30904 5.38810 5.42052 5.49702 5.51248 5.52437
5.67583 5.68162 5.73202 5.79991 5.92725 5.93826 5.97844 6.11877
6.41858 6.59301 6.69705 7.15657 7.46975 7.89481 7.90908 8.36344
8.37163 9.12551 10.75723
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.014559 B = 0.001970 C = 0.001793
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1922.774471 B =14207.216816 C =15611.522653
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.132 3.868
3 H 0.095 0.905
4 C 0.113 3.887
5 N -0.731 5.731
6 C 0.513 3.487
7 O -0.541 6.541
8 C -0.133 4.133
9 C -0.092 4.092
10 H 0.083 0.917
11 C -0.127 4.127
12 C 0.040 3.960
13 N -0.538 5.538
14 C 0.020 3.980
15 C 0.051 3.949
16 N -0.735 5.735
17 C 0.532 3.468
18 O -0.516 6.516
19 C -0.125 4.125
20 S -0.140 6.140
21 C -0.523 4.523
22 H 0.088 0.912
23 C 0.096 3.904
24 N -0.879 5.879
25 Si 0.857 3.143
26 H -0.267 1.267
27 H -0.274 1.274
28 H -0.236 1.236
29 H 0.060 0.940
30 H 0.067 0.933
31 H 0.070 0.930
32 H 0.074 0.926
33 H 0.082 0.918
34 H 0.405 0.595
35 H 0.099 0.901
36 H 0.098 0.902
37 H 0.076 0.924
38 H 0.079 0.921
39 H 0.080 0.920
40 H 0.046 0.954
41 H 0.027 0.973
42 H 0.066 0.934
43 H 0.067 0.933
44 H 0.073 0.927
45 H 0.065 0.935
46 H 0.400 0.600
47 H 0.096 0.904
48 H 0.097 0.903
49 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.262 -3.814 27.154 27.613
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C 0.027 3.973
3 H 0.113 0.887
4 C -0.011 4.011
5 N -0.384 5.384
6 C 0.300 3.700
7 O -0.418 6.418
8 C -0.173 4.173
9 C -0.111 4.111
10 H 0.101 0.899
11 C -0.165 4.165
12 C -0.087 4.087
13 N -0.262 5.262
14 C -0.128 4.128
15 C -0.076 4.076
16 N -0.391 5.391
17 C 0.318 3.682
18 O -0.390 6.390
19 C -0.276 4.276
20 S 0.086 5.914
21 C -0.670 4.670
22 H 0.106 0.894
23 C -0.113 4.113
24 N -0.516 5.516
25 Si 0.682 3.318
26 H -0.192 1.192
27 H -0.199 1.199
28 H -0.160 1.160
29 H 0.079 0.921
30 H 0.085 0.915
31 H 0.089 0.911
32 H 0.092 0.908
33 H 0.100 0.900
34 H 0.240 0.760
35 H 0.117 0.883
36 H 0.117 0.883
37 H 0.095 0.905
38 H 0.098 0.902
39 H 0.098 0.902
40 H 0.064 0.936
41 H 0.045 0.955
42 H 0.085 0.915
43 H 0.086 0.914
44 H 0.091 0.909
45 H 0.083 0.917
46 H 0.234 0.766
47 H 0.115 0.885
48 H 0.115 0.885
49 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges 2.615 -1.705 27.653 27.829
hybrid contribution 0.167 -1.836 -0.886 2.045
sum 2.783 -3.540 26.767 27.143
Atomic orbital electron populations
1.22117 0.94115 1.02612 1.03216 1.21156 0.95070 0.97862 0.83250
0.88670 1.21689 0.80157 1.01510 0.97767 1.46054 1.07742 1.60348
1.24230 1.20723 0.90177 0.77163 0.81911 1.90698 1.70471 1.47526
1.33080 1.21713 0.91853 1.03431 1.00325 1.22126 0.95388 0.99751
0.93870 0.89882 1.22806 0.94710 1.02805 0.96199 1.23047 0.97401
0.94775 0.93490 1.63588 1.13002 1.46584 1.03039 1.22528 1.00852
0.98406 0.91062 1.22865 0.92172 1.00053 0.92528 1.46117 1.69385
1.14118 1.09449 1.20319 0.76864 0.87227 0.83783 1.90713 1.48228
1.15732 1.84330 1.23289 1.04449 1.03556 0.96289 1.84803 1.87234
1.16622 1.02763 1.22308 1.50512 0.98776 0.95432 0.89391 1.24720
0.93339 0.98303 0.94951 1.69936 1.43240 1.35801 1.02595 0.86734
0.81092 0.84799 0.79207 1.19194 1.19918 1.15951 0.92135 0.91452
0.91086 0.90812 0.90014 0.75964 0.88322 0.88334 0.90515 0.90208
0.90172 0.93572 0.95457 0.91521 0.91382 0.90894 0.91673 0.76576
0.88523 0.88451 0.91903
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.47 9.48 37.16 0.35 -1.11 16
2 C 0.13 1.23 2.73 -67.93 -0.19 1.04 16
3 H 0.10 1.04 7.58 -51.93 -0.39 0.64 16
4 C 0.11 0.90 5.23 -4.04 -0.02 0.88 16
5 N -0.73 -5.73 5.39 -60.30 -0.32 -6.06 16
6 C 0.51 4.64 7.62 -10.99 -0.08 4.56 16
7 O -0.54 -6.64 14.85 5.56 0.08 -6.56 16
8 C -0.13 -0.89 5.09 -27.88 -0.14 -1.03 16
9 C -0.09 -0.69 2.55 -88.79 -0.23 -0.92 16
10 H 0.08 0.73 8.04 -51.93 -0.42 0.31 16
11 C -0.13 -0.80 6.52 -24.59 -0.16 -0.96 16
12 C 0.04 0.28 6.73 -2.30 -0.02 0.27 16
13 N -0.54 -4.62 5.44 -239.52 -1.30 -5.93 16
14 C 0.02 0.15 9.12 60.06 0.55 0.70 16
15 C 0.05 0.46 5.49 -2.83 -0.02 0.44 16
16 N -0.74 -7.80 4.52 -53.81 -0.24 -8.04 16
17 C 0.53 8.36 7.81 -10.99 -0.09 8.27 16
18 O -0.52 -10.11 15.53 5.55 0.09 -10.02 16
19 C -0.13 -2.23 6.16 36.01 0.22 -2.01 16
20 S -0.14 -3.41 18.55 -107.50 -1.99 -5.40 16
21 C -0.52 -14.63 10.04 30.94 0.31 -14.32 16
22 H 0.09 2.57 8.03 -52.49 -0.42 2.15 16
23 C 0.10 2.74 5.50 -17.43 -0.10 2.64 16
24 N -0.88 -26.04 13.97 55.49 0.78 -25.27 16
25 Si 0.86 21.31 27.74 -169.99 -4.71 16.60 16
26 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16
27 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16
28 H -0.24 -5.84 6.74 56.52 0.38 -5.46 16
29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16
30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16
31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16
32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16
34 H 0.41 2.88 8.14 -40.82 -0.33 2.54 16
35 H 0.10 0.56 8.06 -51.93 -0.42 0.15 16
36 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16
37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16
38 H 0.08 0.49 8.05 -51.93 -0.42 0.07 16
39 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16
40 H 0.05 0.31 7.78 -51.93 -0.40 -0.09 16
41 H 0.03 0.20 8.10 -51.93 -0.42 -0.22 16
42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16
43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16
44 H 0.07 0.68 7.77 -51.93 -0.40 0.28 16
45 H 0.06 0.67 7.11 -51.93 -0.37 0.30 16
46 H 0.40 3.38 8.60 -40.82 -0.35 3.02 16
47 H 0.10 1.57 8.14 -51.91 -0.42 1.15 16
48 H 0.10 1.64 8.14 -51.92 -0.42 1.22 16
49 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16
LS Contribution 410.28 15.07 6.18 6.18
Total: -1.00 -34.37 410.28 -9.63 -44.01
By element:
Atomic # 1 Polarization: 10.62 SS G_CDS: -8.58 Total: 2.04 kcal
Atomic # 6 Polarization: -1.95 SS G_CDS: 0.40 Total: -1.55 kcal
Atomic # 7 Polarization: -44.20 SS G_CDS: -1.10 Total: -45.30 kcal
Atomic # 8 Polarization: -16.75 SS G_CDS: 0.17 Total: -16.58 kcal
Atomic # 14 Polarization: 21.31 SS G_CDS: -4.71 Total: 16.60 kcal
Atomic # 16 Polarization: -3.41 SS G_CDS: -1.99 Total: -5.40 kcal
Total LS contribution 6.18 Total: 6.18 kcal
Total: -34.37 -9.63 -44.01 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001533997738.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.119 kcal
(2) G-P(sol) polarization free energy of solvation -34.375 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.494 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.632 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.007 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.126 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds