Wall clock time and date at job start Sat Apr 11 2020 06:55:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09001 * 109.47273 * 2 1
4 4 C 1.52996 * 109.47179 * 120.00180 * 2 1 3
5 5 N 1.46500 * 109.47368 * 175.00014 * 4 2 1
6 6 C 1.34779 * 120.00165 * 179.97438 * 5 4 2
7 7 O 1.21282 * 119.99927 * 0.02562 * 6 5 4
8 8 C 1.50699 * 120.00033 * 179.97438 * 6 5 4
9 9 C 1.53006 * 109.46866 * 180.02562 * 8 6 5
10 10 H 1.08999 * 110.62925 * 56.65534 * 9 8 6
11 11 C 1.55144 * 110.70203 * 179.97438 * 9 8 6
12 12 C 1.54905 * 101.64740 * 154.03433 * 11 9 8
13 13 N 1.47837 * 104.80363 * 322.92776 * 12 11 9
14 14 C 1.46899 * 111.00417 * 146.36079 * 13 12 11
15 15 C 1.47447 * 108.56219 * 24.09776 * 13 12 11
16 16 N 1.46499 * 109.47482 * 240.00179 * 2 1 3
17 17 C 1.34775 * 120.00223 * 84.99733 * 16 2 1
18 18 O 1.21288 * 119.99919 * 0.02562 * 17 16 2
19 19 C 1.50702 * 120.00298 * 180.02562 * 17 16 2
20 20 S 1.81000 * 109.47196 * 180.02562 * 19 17 16
21 21 C 1.76202 * 99.99674 * 179.97438 * 20 19 17
22 22 H 1.07994 * 120.00324 * 359.97438 * 21 20 19
23 23 C 1.38806 * 119.99497 * 180.02562 * 21 20 19
24 24 N 1.31635 * 119.99678 * 180.02562 * 23 21 20
25 25 Si 1.86793 * 120.00183 * 359.97438 * 23 21 20
26 26 H 1.48506 * 109.46966 * 90.00542 * 25 23 21
27 27 H 1.48496 * 109.47093 * 210.00207 * 25 23 21
28 28 H 1.48500 * 109.47593 * 330.00700 * 25 23 21
29 29 H 1.08997 * 109.46828 * 179.97438 * 1 2 3
30 30 H 1.08992 * 109.47188 * 300.00092 * 1 2 3
31 31 H 1.09002 * 109.46911 * 59.99929 * 1 2 3
32 32 H 1.08996 * 109.47261 * 54.99687 * 4 2 1
33 33 H 1.09004 * 109.47368 * 295.00071 * 4 2 1
34 34 H 0.96996 * 119.99985 * 0.02562 * 5 4 2
35 35 H 1.08993 * 109.47512 * 60.00410 * 8 6 5
36 36 H 1.09000 * 109.47247 * 300.00119 * 8 6 5
37 37 H 1.09003 * 110.99119 * 272.12699 * 11 9 8
38 38 H 1.08993 * 110.98925 * 35.94508 * 11 9 8
39 39 H 1.09003 * 110.37066 * 204.09491 * 12 11 9
40 40 H 1.09000 * 110.46787 * 81.81407 * 12 11 9
41 41 H 1.08995 * 109.47036 * 299.16522 * 14 13 12
42 42 H 1.08998 * 109.46983 * 59.15924 * 14 13 12
43 43 H 1.08997 * 109.47107 * 179.16176 * 14 13 12
44 44 H 1.09000 * 109.89072 * 239.60089 * 15 13 12
45 45 H 1.09007 * 110.02565 * 118.48872 * 15 13 12
46 46 H 0.97001 * 119.99715 * 265.00571 * 16 2 1
47 47 H 1.09004 * 109.46618 * 300.00073 * 19 17 16
48 48 H 1.08999 * 109.47317 * 59.99455 * 19 17 16
49 49 H 0.96994 * 119.99896 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0400 -0.7213 1.2492
5 7 3.5000 -0.8264 1.1906
6 6 4.1731 -1.4283 2.1912
7 8 3.5700 -1.8834 3.1399
8 6 5.6749 -1.5370 2.1305
9 6 6.1849 -2.2582 3.3799
10 1 5.7159 -3.2374 3.4764
11 6 7.7307 -2.3865 3.3466
12 6 8.0698 -2.4742 4.8555
13 7 7.1157 -1.5548 5.5112
14 6 6.7334 -2.0521 6.8395
15 6 5.9338 -1.4067 4.6421
16 7 2.0184 -0.6905 -1.1962
17 6 2.1471 -0.0182 -2.3571
18 8 1.8590 1.1587 -2.4115
19 6 2.6490 -0.7287 -3.5877
20 16 2.7107 0.4346 -4.9730
21 6 3.3139 -0.6307 -6.2404
22 1 3.5232 -1.6671 -6.0204
23 6 3.5210 -0.1375 -7.5212
24 7 3.9712 -0.9334 -8.4681
25 14 3.1597 1.6553 -7.9015
26 1 4.3788 2.4681 -7.6597
27 1 2.7508 1.7871 -9.3229
28 1 2.0623 2.1361 -7.0241
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3633 0.5138 0.8899
31 1 -0.3633 0.5139 -0.8900
32 1 1.6054 -1.7198 1.2951
33 1 1.7516 -0.1584 2.1370
34 1 3.9824 -0.4622 0.4320
35 1 6.1099 -0.5387 2.0840
36 1 5.9629 -2.1006 1.2431
37 1 8.0361 -3.2932 2.8243
38 1 8.1859 -1.5052 2.8947
39 1 9.0945 -2.1482 5.0337
40 1 7.9275 -3.4917 5.2196
41 1 6.2500 -3.0238 6.7383
42 1 7.6238 -2.1521 7.4601
43 1 6.0426 -1.3494 7.3056
44 1 5.8065 -0.3604 4.3644
45 1 5.0432 -1.7639 5.1592
46 1 2.2490 -1.6317 -1.1526
47 1 3.6482 -1.1212 -3.3985
48 1 1.9762 -1.5506 -3.8326
49 1 4.1163 -0.5887 -9.3630
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001533997738.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:55:42
Heat of formation + Delta-G solvation = -108.385207 kcal
Electronic energy + Delta-G solvation = -27183.795310 eV
Core-core repulsion = 23270.315503 eV
Total energy + Delta-G solvation = -3913.479807 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.172 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-41.25799 -40.68189 -39.55349 -37.45145 -34.80828 -34.65205 -34.29274 -32.70116
-30.93715 -30.07344 -28.67093 -27.83369 -27.09317 -25.56758 -22.93379 -22.03033
-21.83383 -21.63948 -20.85304 -19.90794 -18.27117 -17.94469 -17.49098 -17.36838
-17.08468 -16.66215 -16.43981 -16.26628 -16.15431 -15.78228 -15.10340 -14.99909
-14.95235 -14.74091 -14.30812 -14.14735 -14.10838 -13.97601 -13.67093 -13.52949
-13.33279 -13.30043 -13.01230 -12.99394 -12.73743 -12.58632 -12.53020 -12.28232
-12.14882 -12.03413 -11.85538 -11.74712 -11.60659 -11.15775 -10.99091 -10.84618
-10.51142 -10.22143 -10.11524 -9.31437 -8.97216 -8.50273 -6.20483 1.00780
1.32403 1.47808 1.56508 1.57364 1.66326 2.10712 2.25013 2.29185
2.73263 2.88229 3.08595 3.54045 3.57266 3.68827 3.85532 3.89031
4.00601 4.05509 4.23002 4.29894 4.34811 4.39703 4.45629 4.49615
4.50459 4.54710 4.58364 4.67441 4.71473 4.74572 4.82750 4.85395
4.94310 4.97611 4.99328 5.11101 5.14491 5.23607 5.35844 5.40800
5.46570 5.71946 5.98440 6.08936 6.13146 6.43933 6.50363 6.95201
7.18974 7.23519 8.61969
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.014559 B = 0.001970 C = 0.001793
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1922.774471 B =14207.216816 C =15611.522653
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.159 4.159
2 C 0.138 3.862
3 H 0.083 0.917
4 C 0.122 3.878
5 N -0.725 5.725
6 C 0.512 3.488
7 O -0.576 6.576
8 C -0.128 4.128
9 C -0.089 4.089
10 H 0.069 0.931
11 C -0.120 4.120
12 C 0.037 3.963
13 N -0.552 5.552
14 C 0.020 3.980
15 C 0.055 3.945
16 N -0.709 5.709
17 C 0.541 3.459
18 O -0.557 6.557
19 C -0.113 4.113
20 S -0.174 6.174
21 C -0.528 4.528
22 H 0.062 0.938
23 C 0.045 3.955
24 N -0.917 5.917
25 Si 0.914 3.086
26 H -0.262 1.262
27 H -0.262 1.262
28 H -0.236 1.236
29 H 0.072 0.928
30 H 0.085 0.915
31 H 0.044 0.956
32 H 0.079 0.921
33 H 0.085 0.915
34 H 0.411 0.589
35 H 0.112 0.888
36 H 0.119 0.881
37 H 0.090 0.910
38 H 0.085 0.915
39 H 0.087 0.913
40 H 0.047 0.953
41 H 0.024 0.976
42 H 0.078 0.922
43 H 0.065 0.935
44 H 0.066 0.934
45 H 0.044 0.956
46 H 0.415 0.585
47 H 0.117 0.883
48 H 0.110 0.890
49 H 0.276 0.724
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.628 -3.744 28.226 28.704
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.218 4.218
2 C 0.034 3.966
3 H 0.101 0.899
4 C -0.003 4.003
5 N -0.378 5.378
6 C 0.300 3.700
7 O -0.456 6.456
8 C -0.168 4.168
9 C -0.109 4.109
10 H 0.087 0.913
11 C -0.158 4.158
12 C -0.091 4.091
13 N -0.276 5.276
14 C -0.128 4.128
15 C -0.073 4.073
16 N -0.364 5.364
17 C 0.326 3.674
18 O -0.435 6.435
19 C -0.264 4.264
20 S 0.052 5.948
21 C -0.676 4.676
22 H 0.081 0.919
23 C -0.161 4.161
24 N -0.555 5.555
25 Si 0.736 3.264
26 H -0.186 1.186
27 H -0.186 1.186
28 H -0.160 1.160
29 H 0.091 0.909
30 H 0.104 0.896
31 H 0.063 0.937
32 H 0.097 0.903
33 H 0.103 0.897
34 H 0.247 0.753
35 H 0.130 0.870
36 H 0.137 0.863
37 H 0.108 0.892
38 H 0.104 0.896
39 H 0.105 0.895
40 H 0.066 0.934
41 H 0.043 0.957
42 H 0.096 0.904
43 H 0.084 0.916
44 H 0.084 0.916
45 H 0.062 0.938
46 H 0.252 0.748
47 H 0.135 0.865
48 H 0.129 0.871
49 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges 2.988 -1.670 28.743 28.946
hybrid contribution 0.039 -1.965 -1.052 2.229
sum 3.028 -3.635 27.690 28.092
Atomic orbital electron populations
1.22087 0.93530 1.03308 1.02864 1.21192 0.95430 0.97238 0.82789
0.89870 1.21593 0.80279 1.01563 0.96822 1.46026 1.07702 1.59855
1.24173 1.21120 0.91093 0.76422 0.81336 1.90693 1.71321 1.49141
1.34438 1.21736 0.90048 1.04411 1.00587 1.22068 0.96350 0.98812
0.93648 0.91261 1.22798 0.93458 1.03748 0.95811 1.23132 0.97356
0.94598 0.93977 1.63606 1.13063 1.47437 1.03496 1.22542 1.01338
0.98126 0.90830 1.22772 0.91618 0.99734 0.93177 1.45853 1.67610
1.14627 1.08316 1.19883 0.76662 0.86512 0.84308 1.90711 1.50410
1.17399 1.84967 1.23287 1.06312 1.02214 0.94577 1.84721 1.87002
1.18496 1.04551 1.22474 1.49992 0.98299 0.96817 0.91929 1.25567
0.93313 1.02180 0.94995 1.70018 1.44577 1.37693 1.03234 0.85871
0.81007 0.80085 0.79431 1.18629 1.18646 1.16034 0.90915 0.89577
0.93693 0.90291 0.89686 0.75281 0.86963 0.86327 0.89175 0.89596
0.89452 0.93423 0.95747 0.90369 0.91613 0.91613 0.93757 0.74799
0.86506 0.87143 0.91441
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.57 9.48 71.98 0.68 -1.89 16
2 C 0.14 2.28 2.73 44.99 0.12 2.40 16
3 H 0.08 1.67 7.58 -2.39 -0.02 1.65 16
4 C 0.12 1.66 5.23 86.38 0.45 2.11 16
5 N -0.72 -9.72 5.39 -463.06 -2.49 -12.22 16
6 C 0.51 8.39 7.62 87.66 0.67 9.06 16
7 O -0.58 -13.68 14.85 -3.04 -0.05 -13.73 16
8 C -0.13 -1.43 5.09 29.85 0.15 -1.28 16
9 C -0.09 -1.24 2.55 -9.61 -0.02 -1.26 16
10 H 0.07 1.17 8.04 -2.39 -0.02 1.15 16
11 C -0.12 -1.28 6.52 31.98 0.21 -1.07 16
12 C 0.04 0.46 6.73 86.77 0.58 1.05 16
13 N -0.55 -9.09 5.44 -911.72 -4.96 -14.06 16
14 C 0.02 0.29 9.12 127.69 1.16 1.45 16
15 C 0.05 0.96 5.49 86.64 0.48 1.44 16
16 N -0.71 -13.30 4.52 -442.53 -2.00 -15.30 16
17 C 0.54 16.02 7.81 87.66 0.68 16.71 16
18 O -0.56 -21.28 15.53 -3.06 -0.05 -21.33 16
19 C -0.11 -3.83 6.16 71.24 0.44 -3.39 16
20 S -0.17 -8.34 18.55 -56.49 -1.05 -9.39 16
21 C -0.53 -29.72 10.04 67.96 0.68 -29.04 16
22 H 0.06 3.71 8.03 -2.91 -0.02 3.69 16
23 C 0.04 2.57 5.50 84.86 0.47 3.04 16
24 N -0.92 -54.79 13.97 21.65 0.30 -54.49 16
25 Si 0.91 43.92 27.74 68.60 1.90 45.82 16
26 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16
27 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16
28 H -0.24 -11.31 6.74 99.48 0.67 -10.64 16
29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16
30 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16
31 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16
32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16
33 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16
34 H 0.41 4.72 8.14 -92.71 -0.75 3.96 16
35 H 0.11 0.99 8.06 -2.39 -0.02 0.97 16
36 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16
37 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16
38 H 0.09 0.83 8.05 -2.39 -0.02 0.81 16
39 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16
40 H 0.05 0.58 7.78 -2.39 -0.02 0.57 16
41 H 0.02 0.35 8.10 -2.39 -0.02 0.33 16
42 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16
43 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16
44 H 0.07 1.21 7.77 -2.39 -0.02 1.19 16
45 H 0.04 0.94 7.11 -2.38 -0.02 0.93 16
46 H 0.42 5.65 8.60 -92.71 -0.80 4.85 16
47 H 0.12 3.52 8.14 -2.39 -0.02 3.50 16
48 H 0.11 3.50 8.14 -2.40 -0.02 3.48 16
49 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16
Total: -1.00 -75.26 410.28 -2.28 -77.54
By element:
Atomic # 1 Polarization: 18.47 SS G_CDS: -0.64 Total: 17.82 kcal
Atomic # 6 Polarization: -7.44 SS G_CDS: 6.76 Total: -0.68 kcal
Atomic # 7 Polarization: -86.90 SS G_CDS: -9.16 Total: -96.06 kcal
Atomic # 8 Polarization: -34.96 SS G_CDS: -0.09 Total: -35.06 kcal
Atomic # 14 Polarization: 43.92 SS G_CDS: 1.90 Total: 45.82 kcal
Atomic # 16 Polarization: -8.34 SS G_CDS: -1.05 Total: -9.39 kcal
Total: -75.26 -2.28 -77.54 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001533997738.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -30.844 kcal
(2) G-P(sol) polarization free energy of solvation -75.262 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.106 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.280 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.541 kcal
(6) G-S(sol) free energy of system = (1) + (5) -108.385 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds