Wall clock time and date at job start Sat Apr 11 2020 06:56:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52991 * 1
3 3 H 1.08998 * 109.47474 * 2 1
4 4 N 1.46506 * 109.47246 * 119.99649 * 2 1 3
5 5 C 1.36938 * 119.99656 * 275.00303 * 4 2 1
6 6 H 1.08000 * 120.00580 * 359.97438 * 5 4 2
7 7 C 1.38813 * 119.99853 * 179.97438 * 5 4 2
8 8 N 1.31617 * 120.00373 * 179.97438 * 7 5 4
9 9 Si 1.86802 * 119.99868 * 0.02562 * 7 5 4
10 10 H 1.48498 * 109.47231 * 89.99939 * 9 7 5
11 11 H 1.48500 * 109.46934 * 209.99895 * 9 7 5
12 12 H 1.48497 * 109.47332 * 329.99651 * 9 7 5
13 13 C 1.52997 * 109.47577 * 239.99716 * 2 1 3
14 14 H 1.08996 * 109.51682 * 185.10180 * 13 2 1
15 15 C 1.53296 * 109.51337 * 64.99580 * 13 2 1
16 16 N 1.47149 * 108.38500 * 187.77839 * 15 13 2
17 17 C 1.34781 * 120.97836 * 230.51503 * 16 15 13
18 18 O 1.21586 * 120.00362 * 4.97057 * 17 16 15
19 19 C 1.47506 * 119.99463 * 184.97576 * 17 16 15
20 20 C 1.39348 * 120.21034 * 34.14462 * 19 17 16
21 21 C 1.38325 * 120.49492 * 179.97438 * 20 19 17
22 22 C 1.37916 * 120.59079 * 0.05687 * 21 20 19
23 23 C 1.39534 * 119.99212 * 359.96476 * 22 21 20
24 24 C 1.46569 * 133.96153 * 179.97438 * 23 22 21
25 25 C 1.34212 * 106.89684 * 179.97438 * 24 23 22
26 26 N 1.36900 * 109.88279 * 0.02562 * 25 24 23
27 27 H 0.97001 * 125.01844 * 179.97438 * 26 25 24
28 28 C 1.37131 * 109.96688 * 359.97438 * 26 25 24
29 29 C 1.47146 * 118.03742 * 50.79175 * 16 15 13
30 30 C 1.53717 * 108.16162 * 309.15542 * 29 16 15
31 31 O 1.42967 * 109.14658 * 52.53937 * 30 29 16
32 32 H 1.08999 * 109.47658 * 180.02562 * 1 2 3
33 33 H 1.09003 * 109.47345 * 300.00674 * 1 2 3
34 34 H 1.09003 * 109.47444 * 60.00227 * 1 2 3
35 35 H 0.97000 * 120.00064 * 94.99840 * 4 2 1
36 36 H 0.96997 * 120.00594 * 179.97438 * 8 7 5
37 37 H 1.08997 * 109.68009 * 68.05500 * 15 13 2
38 38 H 1.09004 * 109.68261 * 307.50308 * 15 13 2
39 39 H 1.07993 * 119.74954 * 359.97438 * 20 19 17
40 40 H 1.07995 * 119.70405 * 180.02562 * 21 20 19
41 41 H 1.07996 * 120.00038 * 180.23002 * 22 21 20
42 42 H 1.08008 * 126.55264 * 359.97438 * 24 23 22
43 43 H 1.08002 * 125.05707 * 179.97438 * 25 24 23
44 44 H 1.09001 * 109.68697 * 68.93311 * 29 16 15
45 45 H 1.09000 * 109.68244 * 189.48980 * 29 16 15
46 46 H 1.09003 * 109.65981 * 292.57365 * 30 29 16
47 47 H 1.08997 * 109.48784 * 172.39963 * 30 29 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 7 2.0183 -0.6906 1.1963
5 6 2.1490 -0.0073 2.3758
6 1 1.8925 1.0407 2.4242
7 6 2.6112 -0.6617 3.5094
8 7 2.7374 -0.0049 4.6430
9 14 3.0556 -2.4741 3.4256
10 1 4.4884 -2.6163 3.0624
11 1 2.8155 -3.1043 4.7486
12 1 2.2161 -3.1427 2.3993
13 6 2.0400 -0.7213 -1.2491
14 1 3.1261 -0.8015 -1.2053
15 6 1.6349 0.0695 -2.4984
16 7 1.9698 -0.7337 -3.6849
17 6 2.6765 -0.2051 -4.7036
18 8 3.1246 0.9215 -4.6126
19 6 2.9061 -0.9934 -5.9291
20 6 1.9319 -1.8788 -6.3860
21 6 2.1408 -2.6206 -7.5347
22 6 3.3161 -2.4974 -8.2457
23 6 4.3070 -1.6178 -7.8082
24 6 5.6354 -1.2518 -8.3078
25 6 6.1333 -0.3386 -7.4595
26 7 5.2318 -0.0922 -6.4591
27 1 5.3680 0.5308 -5.7282
28 6 4.1079 -0.8561 -6.6429
29 6 1.5050 -2.1291 -3.7292
30 6 1.9210 -2.8145 -2.4177
31 8 1.4658 -2.0290 -1.3133
32 1 -0.3634 -1.0276 0.0005
33 1 -0.3634 0.5139 0.8899
34 1 -0.3634 0.5138 -0.8900
35 1 2.2490 -1.6317 1.1528
36 1 3.0600 -0.4623 5.4352
37 1 2.1797 1.0131 -2.5281
38 1 0.5627 0.2646 -2.4777
39 1 1.0069 -1.9866 -5.8392
40 1 1.3769 -3.3027 -7.8776
41 1 3.4677 -3.0784 -9.1433
42 1 6.1209 -1.6423 -9.1900
43 1 7.1014 0.1312 -7.5519
44 1 0.4199 -2.1517 -3.8304
45 1 1.9637 -2.6422 -4.5744
46 1 3.0067 -2.9031 -2.3785
47 1 1.4727 -3.8068 -2.3679
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001700612514.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:56:13
Heat of formation + Delta-G solvation = 15.853157 kcal
Electronic energy + Delta-G solvation = -30216.884862 eV
Core-core repulsion = 26173.348483 eV
Total energy + Delta-G solvation = -4043.536379 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.168 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-41.76717 -40.36472 -38.49970 -37.19505 -35.68821 -34.68904 -32.75770 -32.19348
-30.65713 -29.90601 -29.21355 -28.85385 -27.34134 -24.98829 -24.13718 -23.37612
-22.15198 -22.04340 -21.17296 -19.87242 -19.75359 -18.04386 -17.79358 -17.44605
-16.57934 -16.40085 -15.90644 -15.60710 -15.52430 -15.02002 -14.73415 -14.61813
-14.50922 -14.23186 -14.15219 -13.49151 -13.36340 -13.29490 -13.07647 -12.83025
-12.62767 -12.41859 -12.26422 -12.15577 -11.87417 -11.60710 -11.56959 -11.27804
-10.93749 -10.78410 -10.64331 -10.39522 -10.17555 -10.07104 -9.95045 -9.83740
-9.57136 -8.92575 -8.65534 -8.58062 -8.08048 -7.25578 -5.75248 -3.10442
0.41511 1.25757 2.18837 2.59667 2.75282 2.87717 3.40311 3.46343
3.47574 3.53610 3.82938 4.13748 4.36973 4.53631 4.61857 4.63012
4.64615 4.83654 4.85703 4.96587 4.99808 5.01942 5.17330 5.20547
5.30532 5.41941 5.52586 5.53964 5.55084 5.56032 5.58297 5.68759
5.71261 5.86627 5.93578 6.10347 6.13073 6.22710 6.31616 6.33640
6.37191 6.47048 6.73649 6.75314 7.05899 7.10010 7.23422 7.30785
7.89330 8.00893 8.43954 9.23154 9.95524 10.16507 11.42976
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.017742 B = 0.002630 C = 0.002568
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1577.820674 B =10643.907876 C =10901.799730
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.190 3.810
3 H 0.068 0.932
4 N -0.744 5.744
5 C -0.243 4.243
6 H 0.091 0.909
7 C 0.005 3.995
8 N -0.934 5.934
9 Si 0.882 3.118
10 H -0.286 1.286
11 H -0.292 1.292
12 H -0.273 1.273
13 C 0.072 3.928
14 H 0.064 0.936
15 C 0.083 3.917
16 N -0.605 5.605
17 C 0.563 3.437
18 O -0.545 6.545
19 C -0.145 4.145
20 C -0.069 4.069
21 C -0.159 4.159
22 C -0.044 4.044
23 C -0.119 4.119
24 C -0.205 4.205
25 C 0.053 3.947
26 N -0.583 5.583
27 H 0.424 0.576
28 C 0.147 3.853
29 C 0.058 3.942
30 C 0.044 3.956
31 O -0.362 6.362
32 H 0.056 0.944
33 H 0.057 0.943
34 H 0.038 0.962
35 H 0.366 0.634
36 H 0.259 0.741
37 H 0.102 0.898
38 H 0.084 0.916
39 H 0.138 0.862
40 H 0.131 0.869
41 H 0.127 0.873
42 H 0.150 0.850
43 H 0.173 0.827
44 H 0.082 0.918
45 H 0.106 0.894
46 H 0.053 0.947
47 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.081 -6.569 -30.031 30.760
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C 0.080 3.920
3 H 0.086 0.914
4 N -0.387 5.387
5 C -0.372 4.372
6 H 0.108 0.892
7 C -0.191 4.191
8 N -0.582 5.582
9 Si 0.712 3.288
10 H -0.212 1.212
11 H -0.218 1.218
12 H -0.199 1.199
13 C 0.013 3.987
14 H 0.082 0.918
15 C -0.039 4.039
16 N -0.338 5.338
17 C 0.352 3.648
18 O -0.424 6.424
19 C -0.151 4.151
20 C -0.088 4.088
21 C -0.178 4.178
22 C -0.063 4.063
23 C -0.124 4.124
24 C -0.229 4.229
25 C -0.073 4.073
26 N -0.185 5.185
27 H 0.263 0.737
28 C 0.036 3.964
29 C -0.065 4.065
30 C -0.034 4.034
31 O -0.280 6.280
32 H 0.075 0.925
33 H 0.076 0.924
34 H 0.057 0.943
35 H 0.199 0.801
36 H 0.069 0.931
37 H 0.120 0.880
38 H 0.102 0.898
39 H 0.156 0.844
40 H 0.148 0.852
41 H 0.145 0.855
42 H 0.167 0.833
43 H 0.190 0.810
44 H 0.100 0.900
45 H 0.124 0.876
46 H 0.071 0.929
47 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges 1.261 -5.742 -29.538 30.118
hybrid contribution 0.557 -0.990 0.230 1.158
sum 1.818 -6.732 -29.309 30.127
Atomic orbital electron populations
1.22382 0.98112 1.01681 1.00102 1.20167 0.93040 0.94850 0.83907
0.91392 1.42708 1.79591 1.09627 1.06754 1.19076 1.36918 0.95504
0.85736 0.89158 1.24649 1.01416 0.97495 0.95514 1.69699 1.52682
1.35586 1.00249 0.86569 0.78437 0.86920 0.76871 1.21250 1.21797
1.19895 1.23016 0.97592 0.83093 0.94999 0.91845 1.22506 1.02176
0.95821 0.83423 1.48038 1.54194 1.12902 1.18651 1.18295 0.77650
0.86056 0.82755 1.90758 1.50912 1.19302 1.81461 1.18807 0.94886
1.03622 0.97789 1.21305 0.97993 0.93439 0.96102 1.20822 0.98207
1.02393 0.96356 1.20713 0.91736 0.95306 0.98521 1.19216 0.96330
1.00550 0.96293 1.21704 0.94840 1.03505 1.02877 1.21965 0.95583
1.00078 0.89672 1.41912 1.13642 1.37548 1.25397 0.73726 1.17924
0.88206 0.94370 0.95941 1.23121 1.00728 0.82042 1.00630 1.23035
0.99479 0.95220 0.85633 1.88082 1.67669 1.25924 1.46354 0.92505
0.92381 0.94335 0.80087 0.93089 0.87960 0.89751 0.84431 0.85153
0.85487 0.83269 0.80960 0.90012 0.87590 0.92899 0.87722
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.89 9.06 37.15 0.34 -2.55 16
2 C 0.19 3.67 2.77 -67.93 -0.19 3.48 16
3 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16
4 N -0.74 -17.85 4.91 -53.43 -0.26 -18.12 16
5 C -0.24 -6.87 10.41 -15.06 -0.16 -7.03 16
6 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16
7 C 0.00 0.15 5.50 -17.43 -0.10 0.05 16
8 N -0.93 -29.58 13.97 55.49 0.78 -28.80 16
9 Si 0.88 22.51 27.74 -169.99 -4.71 17.79 16
10 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16
11 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16
12 H -0.27 -6.66 6.52 56.52 0.37 -6.30 16
13 C 0.07 1.17 2.61 -26.58 -0.07 1.10 16
14 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16
15 C 0.08 1.16 5.84 -3.53 -0.02 1.14 16
16 N -0.61 -7.59 3.01 -173.26 -0.52 -8.11 16
17 C 0.56 7.70 7.41 -12.48 -0.09 7.60 16
18 O -0.55 -8.98 15.54 5.29 0.08 -8.89 16
19 C -0.15 -1.68 5.35 -104.87 -0.56 -2.24 16
20 C -0.07 -0.61 7.36 -39.14 -0.29 -0.89 16
21 C -0.16 -1.17 10.00 -39.67 -0.40 -1.57 16
22 C -0.04 -0.35 10.09 -39.22 -0.40 -0.75 16
23 C -0.12 -1.19 6.37 -105.15 -0.67 -1.86 16
24 C -0.20 -1.68 11.09 -37.64 -0.42 -2.10 16
25 C 0.05 0.42 11.82 -16.71 -0.20 0.22 16
26 N -0.58 -6.03 5.94 -10.45 -0.06 -6.09 16
27 H 0.42 4.35 8.25 -40.82 -0.34 4.02 16
28 C 0.15 1.70 6.86 -83.76 -0.57 1.12 16
29 C 0.06 0.56 4.95 -3.32 -0.02 0.54 16
30 C 0.04 0.51 7.00 37.53 0.26 0.77 16
31 O -0.36 -5.69 9.24 -35.23 -0.33 -6.02 16
32 H 0.06 1.04 7.56 -51.93 -0.39 0.64 16
33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16
34 H 0.04 0.56 6.42 -51.93 -0.33 0.23 16
35 H 0.37 8.86 5.45 -40.82 -0.22 8.63 16
36 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16
37 H 0.10 1.52 7.06 -51.93 -0.37 1.16 16
38 H 0.08 1.11 6.27 -51.93 -0.33 0.78 16
39 H 0.14 0.97 5.80 -52.49 -0.30 0.67 16
40 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16
41 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16
42 H 0.15 0.85 8.06 -52.48 -0.42 0.43 16
43 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16
44 H 0.08 0.68 7.97 -51.93 -0.41 0.27 16
45 H 0.11 0.85 4.57 -51.93 -0.24 0.61 16
46 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16
47 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16
LS Contribution 374.16 15.07 5.64 5.64
Total: -1.00 -35.53 374.16 -9.26 -44.79
By element:
Atomic # 1 Polarization: 17.10 SS G_CDS: -6.33 Total: 10.77 kcal
Atomic # 6 Polarization: 0.58 SS G_CDS: -3.54 Total: -2.96 kcal
Atomic # 7 Polarization: -61.05 SS G_CDS: -0.07 Total: -61.12 kcal
Atomic # 8 Polarization: -14.67 SS G_CDS: -0.24 Total: -14.91 kcal
Atomic # 14 Polarization: 22.51 SS G_CDS: -4.71 Total: 17.79 kcal
Total LS contribution 5.64 Total: 5.64 kcal
Total: -35.53 -9.26 -44.79 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001700612514.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 60.645 kcal
(2) G-P(sol) polarization free energy of solvation -35.533 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.112 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.792 kcal
(6) G-S(sol) free energy of system = (1) + (5) 15.853 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds