Wall clock time and date at job start Sat Apr 11 2020 06:56:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09000 * 109.47260 * 2 1
4 4 C 1.52995 * 109.47355 * 120.00287 * 2 1 3
5 5 N 1.46498 * 109.47361 * 175.00069 * 4 2 1
6 6 C 1.46502 * 120.00362 * 89.99892 * 5 4 2
7 7 C 1.34774 * 120.00025 * 269.99836 * 5 4 2
8 8 O 1.21282 * 120.00010 * 0.02562 * 7 5 4
9 9 C 1.50701 * 120.00175 * 179.97438 * 7 5 4
10 10 H 1.08998 * 110.33578 * 320.80038 * 9 7 5
11 11 C 1.54911 * 110.37240 * 83.17575 * 9 7 5
12 12 C 1.55136 * 101.65492 * 155.90198 * 11 9 7
13 13 C 1.54316 * 103.01866 * 324.34250 * 12 11 9
14 14 N 1.47447 * 107.23245 * 22.28603 * 13 12 11
15 15 C 1.46904 * 111.00130 * 123.25553 * 14 13 12
16 16 N 1.46504 * 109.47176 * 239.99954 * 2 1 3
17 17 C 1.34775 * 119.99561 * 84.99647 * 16 2 1
18 18 O 1.21282 * 120.00577 * 0.02562 * 17 16 2
19 19 C 1.50703 * 119.99768 * 179.97438 * 17 16 2
20 20 S 1.81002 * 109.47349 * 180.02562 * 19 17 16
21 21 C 1.76199 * 100.00182 * 180.02562 * 20 19 17
22 22 H 1.07999 * 119.99976 * 0.02562 * 21 20 19
23 23 C 1.38803 * 119.99949 * 179.97438 * 21 20 19
24 24 N 1.31630 * 119.99849 * 0.02562 * 23 21 20
25 25 Si 1.86800 * 120.00065 * 179.97438 * 23 21 20
26 26 H 1.48501 * 109.46755 * 90.00066 * 25 23 21
27 27 H 1.48495 * 109.46931 * 210.00080 * 25 23 21
28 28 H 1.48500 * 109.46738 * 330.00322 * 25 23 21
29 29 H 1.09000 * 109.47066 * 60.00113 * 1 2 3
30 30 H 1.08994 * 109.46834 * 180.02562 * 1 2 3
31 31 H 1.09004 * 109.46932 * 299.99666 * 1 2 3
32 32 H 1.09000 * 109.47182 * 294.99694 * 4 2 1
33 33 H 1.09001 * 109.47534 * 55.00035 * 4 2 1
34 34 H 1.08997 * 109.47188 * 89.99856 * 6 5 4
35 35 H 1.08996 * 109.47374 * 210.00500 * 6 5 4
36 36 H 1.09001 * 109.46817 * 329.99772 * 6 5 4
37 37 H 1.09000 * 110.98608 * 273.98964 * 11 9 7
38 38 H 1.09002 * 110.99373 * 37.80699 * 11 9 7
39 39 H 1.09004 * 110.70650 * 205.96228 * 12 11 9
40 40 H 1.08995 * 110.70998 * 82.72253 * 12 11 9
41 41 H 1.08999 * 109.89335 * 262.87916 * 13 12 11
42 42 H 1.09000 * 109.89288 * 141.68832 * 13 12 11
43 43 H 1.08996 * 109.47037 * 299.15889 * 15 14 13
44 44 H 1.09003 * 109.46820 * 59.15736 * 15 14 13
45 45 H 1.08998 * 109.46777 * 179.15571 * 15 14 13
46 46 H 0.96993 * 120.00065 * 264.99905 * 16 2 1
47 47 H 1.09005 * 109.46867 * 60.00428 * 19 17 16
48 48 H 1.09000 * 109.47235 * 300.00468 * 19 17 16
49 49 H 0.97005 * 119.99878 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0401 -0.7213 1.2491
5 7 3.5001 -0.8264 1.1905
6 6 4.3344 0.2340 1.7612
7 6 4.0758 -1.8986 0.6115
8 8 3.3851 -2.7763 0.1386
9 6 5.5777 -2.0065 0.5506
10 1 6.0193 -1.0322 0.3411
11 6 6.1316 -2.5779 1.8797
12 6 7.4835 -3.1848 1.4206
13 6 7.1619 -3.7231 0.0105
14 7 5.9820 -2.9870 -0.4794
15 6 6.2702 -2.3205 -1.7564
16 7 2.0184 -0.6906 -1.1962
17 6 2.1470 -0.0182 -2.3571
18 8 1.8589 1.1586 -2.4115
19 6 2.6499 -0.7285 -3.5875
20 16 2.7113 0.4347 -4.9729
21 6 3.3143 -0.6305 -6.2403
22 1 3.5229 -1.6671 -6.0205
23 6 3.5201 -0.1377 -7.5215
24 7 3.2653 1.1256 -7.7894
25 14 4.1601 -1.2668 -8.8650
26 1 3.0148 -1.9047 -9.5625
27 1 4.9549 -0.4763 -9.8389
28 1 5.0192 -2.3169 -8.2613
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0276 0.0005
31 1 -0.3633 0.5138 0.8901
32 1 1.7518 -0.1584 2.1369
33 1 1.6055 -1.7199 1.2951
34 1 4.5426 0.0092 2.8072
35 1 5.2722 0.2953 1.2091
36 1 3.8092 1.1866 1.6918
37 1 6.2880 -1.7845 2.6106
38 1 5.4725 -3.3493 2.2779
39 1 7.7866 -3.9959 2.0828
40 1 8.2548 -2.4161 1.3729
41 1 6.9390 -4.7888 0.0623
42 1 8.0085 -3.5510 -0.6541
43 1 7.0805 -1.6048 -1.6179
44 1 6.5651 -3.0647 -2.4962
45 1 5.3787 -1.7975 -2.1025
46 1 2.2491 -1.6317 -1.1526
47 1 1.9777 -1.5508 -3.8325
48 1 3.6492 -1.1203 -3.3979
49 1 3.4095 1.4702 -8.6847
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001718573961.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:56:16
Heat of formation + Delta-G solvation = -60.170749 kcal
Electronic energy + Delta-G solvation = -29353.308332 eV
Core-core repulsion = 25441.919261 eV
Total energy + Delta-G solvation = -3911.389071 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.172 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-40.73115 -39.23424 -38.23127 -36.18521 -34.64320 -32.38050 -32.32687 -31.47153
-29.94057 -28.45309 -27.61938 -26.22068 -25.65649 -25.42732 -22.64917 -21.54292
-21.20488 -20.08120 -19.16492 -17.92051 -17.57592 -16.67501 -16.27906 -16.16294
-15.93502 -15.46853 -14.76660 -14.75473 -14.70048 -14.27119 -14.07487 -13.79561
-13.60836 -13.34923 -13.18124 -13.10421 -12.90164 -12.79317 -12.67284 -12.47392
-12.29030 -12.17572 -11.92600 -11.76219 -11.68554 -11.50585 -11.45942 -11.11891
-11.06883 -11.01947 -10.96637 -10.71402 -9.85683 -9.75908 -9.27452 -9.02314
-8.94315 -8.65535 -8.48901 -8.17038 -6.43976 -6.17071 -3.86584 2.42368
2.67058 3.14434 3.22780 3.25782 3.31582 3.38515 3.73369 3.88046
4.13393 4.25581 4.27096 4.52188 4.55234 4.68933 4.71794 4.89307
4.98341 5.07308 5.12628 5.18048 5.20118 5.21120 5.25572 5.32800
5.35395 5.36105 5.41755 5.47007 5.51070 5.54334 5.63455 5.65645
5.78114 5.84679 5.90469 6.03878 6.06369 6.12462 6.29310 6.31448
6.63116 6.80115 6.86326 7.15596 7.65124 7.91780 8.10906 8.40866
8.77939 9.28546 10.90373
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.010069 B = 0.003643 C = 0.002842
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2780.151766 B = 7683.147160 C = 9850.242311
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.127 3.873
3 H 0.086 0.914
4 C 0.108 3.892
5 N -0.617 5.617
6 C 0.076 3.924
7 C 0.528 3.472
8 O -0.514 6.514
9 C 0.052 3.948
10 H 0.079 0.921
11 C -0.114 4.114
12 C -0.140 4.140
13 C 0.043 3.957
14 N -0.511 5.511
15 C 0.019 3.981
16 N -0.730 5.730
17 C 0.532 3.468
18 O -0.525 6.525
19 C -0.150 4.150
20 S -0.061 6.061
21 C -0.533 4.533
22 H 0.072 0.928
23 C 0.074 3.926
24 N -0.869 5.869
25 Si 0.917 3.083
26 H -0.277 1.277
27 H -0.282 1.282
28 H -0.272 1.272
29 H 0.068 0.932
30 H 0.058 0.942
31 H 0.062 0.938
32 H 0.091 0.909
33 H 0.090 0.910
34 H 0.058 0.942
35 H 0.071 0.929
36 H 0.075 0.925
37 H 0.080 0.920
38 H 0.081 0.919
39 H 0.079 0.921
40 H 0.070 0.930
41 H 0.081 0.919
42 H 0.060 0.940
43 H 0.029 0.971
44 H 0.076 0.924
45 H 0.072 0.928
46 H 0.407 0.593
47 H 0.088 0.912
48 H 0.085 0.915
49 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.100 -6.202 25.323 26.775
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C 0.021 3.979
3 H 0.104 0.896
4 C -0.016 4.016
5 N -0.351 5.351
6 C -0.068 4.068
7 C 0.315 3.685
8 O -0.388 6.388
9 C -0.060 4.060
10 H 0.096 0.904
11 C -0.153 4.153
12 C -0.179 4.179
13 C -0.085 4.085
14 N -0.235 5.235
15 C -0.129 4.129
16 N -0.389 5.389
17 C 0.318 3.682
18 O -0.400 6.400
19 C -0.301 4.301
20 S 0.166 5.834
21 C -0.681 4.681
22 H 0.090 0.910
23 C -0.135 4.135
24 N -0.504 5.504
25 Si 0.743 3.257
26 H -0.203 1.203
27 H -0.208 1.208
28 H -0.197 1.197
29 H 0.087 0.913
30 H 0.077 0.923
31 H 0.081 0.919
32 H 0.109 0.891
33 H 0.108 0.892
34 H 0.076 0.924
35 H 0.090 0.910
36 H 0.094 0.906
37 H 0.098 0.902
38 H 0.100 0.900
39 H 0.098 0.902
40 H 0.089 0.911
41 H 0.099 0.901
42 H 0.078 0.922
43 H 0.047 0.953
44 H 0.095 0.905
45 H 0.091 0.909
46 H 0.246 0.754
47 H 0.106 0.894
48 H 0.103 0.897
49 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 4.862 -4.948 24.740 25.694
hybrid contribution 1.503 -1.752 -0.736 2.423
sum 6.365 -6.700 24.004 25.721
Atomic orbital electron populations
1.22132 0.94866 1.02306 1.02780 1.21278 0.94284 0.97718 0.84660
0.89605 1.21858 0.79583 1.02633 0.97495 1.47814 1.06585 1.21435
1.59263 1.21875 0.95738 0.90920 0.98232 1.20377 0.90071 0.80898
0.77114 1.90622 1.64136 1.39158 1.44926 1.22581 0.92885 0.96624
0.93913 0.90376 1.22631 0.96841 1.00810 0.94975 1.22793 0.96930
1.00966 0.97188 1.22870 0.91353 0.99521 0.94731 1.63081 1.33368
1.24631 1.02405 1.22620 1.00821 0.98419 0.91010 1.46328 1.68651
1.14936 1.08945 1.20287 0.76855 0.87144 0.83936 1.90668 1.48923
1.15801 1.84614 1.23517 1.03492 1.04692 0.98375 1.85308 1.86356
1.12935 0.98801 1.22884 1.50630 0.98202 0.96395 0.90964 1.24973
0.95166 0.95490 0.97882 1.70025 1.45834 1.13192 1.21397 0.86194
0.78875 0.80011 0.80599 1.20269 1.20803 1.19674 0.91325 0.92338
0.91888 0.89105 0.89206 0.92387 0.91019 0.90646 0.90156 0.90046
0.90221 0.91124 0.90092 0.92192 0.95257 0.90520 0.90945 0.75431
0.89409 0.89688 0.92280
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.85 9.48 37.16 0.35 -1.50 16
2 C 0.13 1.59 2.88 -67.93 -0.20 1.39 16
3 H 0.09 1.18 7.58 -51.93 -0.39 0.79 16
4 C 0.11 1.01 5.14 -4.05 -0.02 0.99 16
5 N -0.62 -5.95 2.77 -181.58 -0.50 -6.45 16
6 C 0.08 0.50 10.20 59.85 0.61 1.11 16
7 C 0.53 6.34 6.25 -10.99 -0.07 6.27 16
8 O -0.51 -7.89 13.90 5.56 0.08 -7.81 16
9 C 0.05 0.52 2.03 -67.34 -0.14 0.39 16
10 H 0.08 0.74 5.95 -51.93 -0.31 0.43 16
11 C -0.11 -0.84 6.41 -24.59 -0.16 -1.00 16
12 C -0.14 -0.93 6.94 -24.91 -0.17 -1.11 16
13 C 0.04 0.38 6.90 -2.83 -0.02 0.36 16
14 N -0.51 -6.02 4.69 -232.97 -1.09 -7.11 16
15 C 0.02 0.24 9.12 60.07 0.55 0.79 16
16 N -0.73 -11.55 4.48 -53.80 -0.24 -11.80 16
17 C 0.53 10.76 7.81 -10.98 -0.09 10.67 16
18 O -0.52 -12.26 15.52 5.56 0.09 -12.17 16
19 C -0.15 -3.31 6.16 36.01 0.22 -3.09 16
20 S -0.06 -1.69 20.57 -107.50 -2.21 -3.91 16
21 C -0.53 -15.57 9.50 30.94 0.29 -15.28 16
22 H 0.07 2.02 7.80 -52.49 -0.41 1.62 16
23 C 0.07 2.15 5.49 -17.43 -0.10 2.05 16
24 N -0.87 -26.57 13.22 55.49 0.73 -25.83 16
25 Si 0.92 21.85 29.55 -169.99 -5.02 16.83 16
26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16
27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
28 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16
29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16
30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16
31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16
32 H 0.09 0.58 8.07 -51.93 -0.42 0.16 16
33 H 0.09 0.92 7.42 -51.93 -0.39 0.53 16
34 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16
35 H 0.07 0.46 5.95 -51.93 -0.31 0.15 16
36 H 0.07 0.46 8.07 -51.93 -0.42 0.04 16
37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16
38 H 0.08 0.68 8.05 -51.93 -0.42 0.26 16
39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16
40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16
41 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16
42 H 0.06 0.50 7.58 -51.93 -0.39 0.10 16
43 H 0.03 0.32 8.09 -51.93 -0.42 -0.10 16
44 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16
45 H 0.07 1.07 7.63 -51.93 -0.40 0.67 16
46 H 0.41 6.49 5.82 -40.82 -0.24 6.25 16
47 H 0.09 1.87 8.14 -51.91 -0.42 1.45 16
48 H 0.08 1.78 7.63 -51.92 -0.40 1.38 16
49 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16
LS Contribution 405.76 15.07 6.11 6.11
Total: -1.00 -36.48 405.76 -9.26 -45.74
By element:
Atomic # 1 Polarization: 12.63 SS G_CDS: -8.27 Total: 4.37 kcal
Atomic # 6 Polarization: 0.96 SS G_CDS: 1.07 Total: 2.03 kcal
Atomic # 7 Polarization: -50.09 SS G_CDS: -1.10 Total: -51.19 kcal
Atomic # 8 Polarization: -20.14 SS G_CDS: 0.16 Total: -19.98 kcal
Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal
Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.91 kcal
Total LS contribution 6.11 Total: 6.11 kcal
Total: -36.48 -9.26 -45.74 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001718573961.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -14.435 kcal
(2) G-P(sol) polarization free energy of solvation -36.479 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.914 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.257 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.736 kcal
(6) G-S(sol) free energy of system = (1) + (5) -60.171 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds