Wall clock time and date at job start Sat Apr 11 2020 06:55:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.09004 * 109.46657 * 2 1
4 4 N 1.46494 * 109.47009 * 119.99979 * 2 1 3
5 5 C 1.36934 * 120.00240 * 274.99959 * 4 2 1
6 6 H 1.08004 * 120.00121 * 0.02562 * 5 4 2
7 7 C 1.38810 * 120.00137 * 179.97438 * 5 4 2
8 8 N 1.31619 * 120.00334 * 0.02562 * 7 5 4
9 9 Si 1.86805 * 120.00176 * 179.97438 * 7 5 4
10 10 H 1.48497 * 109.47361 * 180.02562 * 9 7 5
11 11 H 1.48502 * 109.47302 * 300.00772 * 9 7 5
12 12 H 1.48500 * 109.46721 * 60.00222 * 9 7 5
13 13 C 1.53001 * 109.47139 * 240.00485 * 2 1 3
14 14 H 1.08996 * 109.50922 * 184.89821 * 13 2 1
15 15 C 1.53289 * 109.51503 * 64.74289 * 13 2 1
16 16 N 1.47150 * 108.38541 * 187.77469 * 15 13 2
17 17 C 1.34780 * 120.98267 * 230.51693 * 16 15 13
18 18 O 1.21595 * 119.99894 * 174.23705 * 17 16 15
19 19 C 1.47576 * 119.99818 * 354.23519 * 17 16 15
20 20 C 1.40246 * 119.82896 * 140.51836 * 19 17 16
21 21 C 1.36199 * 120.37461 * 179.71262 * 20 19 17
22 22 C 1.39923 * 119.96205 * 0.56095 * 21 20 19
23 23 C 1.46254 * 133.84228 * 179.69739 * 22 21 20
24 24 C 1.34450 * 107.03147 * 180.02562 * 23 22 21
25 25 N 1.36558 * 109.98106 * 359.97438 * 24 23 22
26 26 H 0.96999 * 125.07005 * 180.02562 * 25 24 23
27 27 C 1.37823 * 109.85809 * 0.02562 * 25 24 23
28 28 C 1.38685 * 133.37201 * 179.97438 * 27 25 24
29 29 C 1.47152 * 118.03643 * 50.53633 * 16 15 13
30 30 C 1.53296 * 108.38420 * 309.46415 * 29 16 15
31 31 O 1.42964 * 109.22330 * 52.30106 * 30 29 16
32 32 H 1.08998 * 109.47284 * 299.99866 * 1 2 3
33 33 H 1.09001 * 109.47107 * 60.00073 * 1 2 3
34 34 H 1.09001 * 109.46792 * 179.97438 * 1 2 3
35 35 H 0.97006 * 120.00083 * 95.00474 * 4 2 1
36 36 H 0.96992 * 120.00257 * 179.97438 * 8 7 5
37 37 H 1.09006 * 109.68642 * 307.49836 * 15 13 2
38 38 H 1.09006 * 109.68121 * 68.05146 * 15 13 2
39 39 H 1.07996 * 119.80904 * 359.97438 * 20 19 17
40 40 H 1.08003 * 120.01968 * 180.27400 * 21 20 19
41 41 H 1.07996 * 126.47741 * 359.97438 * 23 22 21
42 42 H 1.08005 * 125.01022 * 180.02562 * 24 23 22
43 43 H 1.08003 * 120.16853 * 0.04592 * 28 27 25
44 44 H 1.08999 * 109.68179 * 189.74383 * 29 16 15
45 45 H 1.08995 * 109.68126 * 69.18654 * 29 16 15
46 46 H 1.09003 * 109.51593 * 292.38119 * 30 29 16
47 47 H 1.08996 * 109.55555 * 172.25350 * 30 29 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0183 -0.6906 1.1961
5 6 2.1491 -0.0075 2.3757
6 1 1.8919 1.0403 2.4244
7 6 2.6113 -0.6620 3.5092
8 7 2.9243 -1.9391 3.4502
9 14 2.7904 0.2700 5.1182
10 1 3.2992 -0.6484 6.1683
11 1 3.7464 1.3918 4.9368
12 1 1.4684 0.8078 5.5285
13 6 2.0401 -0.7211 -1.2493
14 1 3.1265 -0.7981 -1.2072
15 6 1.6295 0.0665 -2.4987
16 7 1.9648 -0.7372 -3.6849
17 6 2.6674 -0.2075 -4.7058
18 8 3.0249 -0.9137 -5.6288
19 6 3.0028 1.2297 -4.7034
20 6 4.2629 1.6527 -5.1508
21 6 4.5821 2.9767 -5.1589
22 6 3.6542 3.9220 -4.7080
23 6 3.6730 5.3787 -4.5795
24 6 2.4804 5.7453 -4.0785
25 7 1.7003 4.6428 -3.8765
26 1 0.7974 4.6562 -3.5223
27 6 2.3873 3.5082 -4.2510
28 6 2.0684 2.1585 -4.2519
29 6 1.5098 -2.1360 -3.7238
30 6 1.9262 -2.8164 -2.4147
31 8 1.4706 -2.0311 -1.3104
32 1 -0.3634 0.5138 0.8900
33 1 -0.3633 0.5138 -0.8900
34 1 -0.3633 -1.0277 -0.0005
35 1 2.2491 -1.6318 1.1526
36 1 3.2476 -2.3963 4.2421
37 1 0.5566 0.2577 -2.4761
38 1 2.1708 1.0121 -2.5309
39 1 4.9827 0.9247 -5.4948
40 1 5.5526 3.2965 -5.5087
41 1 4.4905 6.0355 -4.8375
42 1 2.1829 6.7619 -3.8676
43 1 1.1002 1.8294 -3.9045
44 1 1.9719 -2.6490 -4.5672
45 1 0.4250 -2.1666 -3.8244
46 1 3.0123 -2.9010 -2.3777
47 1 1.4818 -3.8103 -2.3626
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001734178200.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:55:18
Heat of formation + Delta-G solvation = 9.320123 kcal
Electronic energy + Delta-G solvation = -30358.368569 eV
Core-core repulsion = 26314.548897 eV
Total energy + Delta-G solvation = -4043.819672 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.168 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-41.56974 -40.37396 -38.52222 -36.76145 -35.38750 -34.71312 -32.61734 -32.20249
-30.45973 -29.76650 -29.36846 -28.28893 -27.13962 -24.80837 -24.01570 -23.41325
-22.67434 -21.69793 -20.98416 -19.71418 -19.54268 -18.08423 -17.52903 -17.23954
-16.49667 -16.25282 -15.82611 -15.41757 -15.13459 -14.98554 -14.66094 -14.53512
-14.27864 -14.08471 -14.02942 -13.50464 -13.38198 -13.34768 -13.10230 -12.79639
-12.53440 -12.28436 -12.07274 -11.99484 -11.67836 -11.39641 -11.27825 -11.12519
-10.85581 -10.76261 -10.55328 -10.32286 -10.11103 -10.02031 -9.85625 -9.75598
-9.65659 -8.91158 -8.56456 -8.42767 -7.97743 -6.95451 -5.74700 -3.03970
0.60867 1.30759 2.32329 2.69095 2.75704 2.95551 3.43598 3.47930
3.49353 3.69909 4.00582 4.29545 4.49571 4.54740 4.56646 4.80072
4.89110 4.97713 5.06232 5.09171 5.16277 5.23661 5.26289 5.31958
5.43553 5.51380 5.55462 5.62097 5.67581 5.71913 5.74941 5.81162
5.93013 5.95789 6.08905 6.18593 6.27124 6.36432 6.39378 6.43005
6.46636 6.59324 6.75965 6.84251 7.11754 7.20694 7.25851 7.48374
7.68512 8.03036 8.43196 9.55006 10.12543 10.48980 11.47568
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.009561 B = 0.003476 C = 0.002798
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2927.893860 B = 8053.780163 C =10004.928609
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.186 3.814
3 H 0.057 0.943
4 N -0.718 5.718
5 C -0.242 4.242
6 H 0.069 0.931
7 C -0.011 4.011
8 N -0.930 5.930
9 Si 0.906 3.094
10 H -0.291 1.291
11 H -0.286 1.286
12 H -0.286 1.286
13 C 0.075 3.925
14 H 0.064 0.936
15 C 0.069 3.931
16 N -0.607 5.607
17 C 0.566 3.434
18 O -0.539 6.539
19 C -0.109 4.109
20 C -0.093 4.093
21 C -0.078 4.078
22 C -0.087 4.087
23 C -0.211 4.211
24 C 0.061 3.939
25 N -0.592 5.592
26 H 0.418 0.582
27 C 0.085 3.915
28 C -0.090 4.090
29 C 0.078 3.922
30 C 0.047 3.953
31 O -0.358 6.358
32 H 0.052 0.948
33 H 0.032 0.968
34 H 0.058 0.942
35 H 0.390 0.610
36 H 0.256 0.744
37 H 0.082 0.918
38 H 0.101 0.899
39 H 0.131 0.869
40 H 0.129 0.871
41 H 0.148 0.852
42 H 0.172 0.828
43 H 0.130 0.870
44 H 0.099 0.901
45 H 0.076 0.924
46 H 0.054 0.946
47 H 0.104 0.896
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.629 11.755 -19.183 22.651
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C 0.075 3.925
3 H 0.075 0.925
4 N -0.360 5.360
5 C -0.373 4.373
6 H 0.087 0.913
7 C -0.207 4.207
8 N -0.578 5.578
9 Si 0.737 3.263
10 H -0.217 1.217
11 H -0.213 1.213
12 H -0.213 1.213
13 C 0.015 3.985
14 H 0.082 0.918
15 C -0.054 4.054
16 N -0.340 5.340
17 C 0.355 3.645
18 O -0.417 6.417
19 C -0.114 4.114
20 C -0.113 4.113
21 C -0.097 4.097
22 C -0.092 4.092
23 C -0.236 4.236
24 C -0.066 4.066
25 N -0.195 5.195
26 H 0.255 0.745
27 C -0.022 4.022
28 C -0.112 4.112
29 C -0.044 4.044
30 C -0.031 4.031
31 O -0.276 6.276
32 H 0.071 0.929
33 H 0.051 0.949
34 H 0.077 0.923
35 H 0.224 0.776
36 H 0.065 0.935
37 H 0.100 0.900
38 H 0.119 0.881
39 H 0.149 0.851
40 H 0.147 0.853
41 H 0.166 0.834
42 H 0.190 0.810
43 H 0.148 0.852
44 H 0.117 0.883
45 H 0.094 0.906
46 H 0.072 0.928
47 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges -2.675 11.431 -19.326 22.613
hybrid contribution -0.179 0.327 1.005 1.072
sum -2.853 11.759 -18.321 21.956
Atomic orbital electron populations
1.22428 0.98760 1.01743 0.99321 1.20174 0.92738 0.94462 0.85107
0.92540 1.42341 1.77832 1.11009 1.04825 1.19174 1.36947 0.93780
0.87381 0.91305 1.24733 1.02093 0.95924 0.97976 1.69663 1.50519
1.08631 1.28938 0.86300 0.77738 0.78619 0.83692 1.21690 1.21304
1.21305 1.22978 0.97780 0.83285 0.94439 0.91753 1.22980 1.01954
0.95852 0.84647 1.48078 1.54594 1.12799 1.18574 1.18274 0.77191
0.87253 0.81760 1.90769 1.53363 1.61763 1.35819 1.19438 0.95884
0.92086 1.03965 1.20601 0.95352 0.95893 0.99474 1.20199 0.98724
0.91454 0.99277 1.19401 0.93600 0.93859 1.02365 1.21731 0.98714
0.92770 1.10403 1.21902 0.91740 0.91585 1.01366 1.41778 1.16241
1.04515 1.56918 0.74488 1.18028 0.93158 0.87986 1.03037 1.20263
1.00198 0.89255 1.01435 1.22366 1.00218 0.81595 1.00260 1.22921
0.99617 0.95164 0.85425 1.88094 1.67720 1.25504 1.46317 0.92908
0.94905 0.92324 0.77593 0.93460 0.90001 0.88110 0.85086 0.85302
0.83416 0.81041 0.85200 0.88272 0.90621 0.92784 0.87797
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.85 9.06 37.16 0.34 -2.52 16
2 C 0.19 3.58 2.77 -67.93 -0.19 3.40 16
3 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16
4 N -0.72 -17.96 5.10 -53.42 -0.27 -18.23 16
5 C -0.24 -6.63 9.93 -15.06 -0.15 -6.78 16
6 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16
7 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16
8 N -0.93 -28.16 13.06 55.49 0.72 -27.44 16
9 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16
10 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16
11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
13 C 0.07 1.25 2.61 -26.58 -0.07 1.18 16
14 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16
15 C 0.07 0.91 4.18 -3.54 -0.01 0.89 16
16 N -0.61 -8.23 3.02 -173.49 -0.52 -8.76 16
17 C 0.57 8.29 7.32 -12.45 -0.09 8.19 16
18 O -0.54 -9.29 16.37 5.28 0.09 -9.20 16
19 C -0.11 -1.42 5.16 -104.95 -0.54 -1.96 16
20 C -0.09 -1.13 9.54 -39.56 -0.38 -1.51 16
21 C -0.08 -0.84 10.03 -39.68 -0.40 -1.24 16
22 C -0.09 -0.96 6.37 -105.04 -0.67 -1.63 16
23 C -0.21 -1.83 11.08 -37.70 -0.42 -2.25 16
24 C 0.06 0.43 11.81 -16.79 -0.20 0.23 16
25 N -0.59 -4.66 6.07 -10.69 -0.06 -4.72 16
26 H 0.42 2.16 8.96 -40.82 -0.37 1.79 16
27 C 0.08 0.91 7.26 -84.00 -0.61 0.30 16
28 C -0.09 -1.02 7.42 -39.03 -0.29 -1.31 16
29 C 0.08 0.98 6.65 -3.53 -0.02 0.95 16
30 C 0.05 0.64 6.99 37.31 0.26 0.90 16
31 O -0.36 -6.14 9.24 -35.23 -0.33 -6.46 16
32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16
33 H 0.03 0.46 6.41 -51.93 -0.33 0.12 16
34 H 0.06 1.11 7.56 -51.93 -0.39 0.72 16
35 H 0.39 10.62 7.58 -40.82 -0.31 10.31 16
36 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16
37 H 0.08 0.99 6.13 -51.93 -0.32 0.67 16
38 H 0.10 1.27 4.95 -51.93 -0.26 1.01 16
39 H 0.13 1.53 8.04 -52.49 -0.42 1.10 16
40 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16
41 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16
42 H 0.17 0.58 8.06 -52.48 -0.42 0.15 16
43 H 0.13 1.27 6.41 -52.48 -0.34 0.93 16
44 H 0.10 1.24 7.06 -51.93 -0.37 0.87 16
45 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16
46 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16
47 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16
LS Contribution 379.64 15.07 5.72 5.72
Total: -1.00 -34.60 379.64 -9.66 -44.26
By element:
Atomic # 1 Polarization: 17.63 SS G_CDS: -6.45 Total: 11.18 kcal
Atomic # 6 Polarization: -0.03 SS G_CDS: -3.54 Total: -3.56 kcal
Atomic # 7 Polarization: -59.01 SS G_CDS: -0.14 Total: -59.14 kcal
Atomic # 8 Polarization: -15.42 SS G_CDS: -0.24 Total: -15.66 kcal
Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal
Total LS contribution 5.72 Total: 5.72 kcal
Total: -34.60 -9.66 -44.26 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001734178200.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.584 kcal
(2) G-P(sol) polarization free energy of solvation -34.599 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.985 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.264 kcal
(6) G-S(sol) free energy of system = (1) + (5) 9.320 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds