Wall clock time and date at job start Sat Apr 11 2020 06:55:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.09004 * 109.46657 * 2 1
4 4 N 1.46494 * 109.47009 * 119.99979 * 2 1 3
5 5 C 1.36934 * 120.00240 * 274.99959 * 4 2 1
6 6 H 1.08004 * 120.00121 * 0.02562 * 5 4 2
7 7 C 1.38810 * 120.00137 * 179.97438 * 5 4 2
8 8 N 1.31619 * 120.00334 * 0.02562 * 7 5 4
9 9 Si 1.86805 * 120.00176 * 179.97438 * 7 5 4
10 10 H 1.48497 * 109.47361 * 180.02562 * 9 7 5
11 11 H 1.48502 * 109.47302 * 300.00772 * 9 7 5
12 12 H 1.48500 * 109.46721 * 60.00222 * 9 7 5
13 13 C 1.53001 * 109.47139 * 240.00485 * 2 1 3
14 14 H 1.08996 * 109.50922 * 184.89821 * 13 2 1
15 15 C 1.53289 * 109.51503 * 64.74289 * 13 2 1
16 16 N 1.47150 * 108.38541 * 187.77469 * 15 13 2
17 17 C 1.34780 * 120.98267 * 230.51693 * 16 15 13
18 18 O 1.21595 * 119.99894 * 174.23705 * 17 16 15
19 19 C 1.47576 * 119.99818 * 354.23519 * 17 16 15
20 20 C 1.40246 * 119.82896 * 140.51836 * 19 17 16
21 21 C 1.36199 * 120.37461 * 179.71262 * 20 19 17
22 22 C 1.39923 * 119.96205 * 0.56095 * 21 20 19
23 23 C 1.46254 * 133.84228 * 179.69739 * 22 21 20
24 24 C 1.34450 * 107.03147 * 180.02562 * 23 22 21
25 25 N 1.36558 * 109.98106 * 359.97438 * 24 23 22
26 26 H 0.96999 * 125.07005 * 180.02562 * 25 24 23
27 27 C 1.37823 * 109.85809 * 0.02562 * 25 24 23
28 28 C 1.38685 * 133.37201 * 179.97438 * 27 25 24
29 29 C 1.47152 * 118.03643 * 50.53633 * 16 15 13
30 30 C 1.53296 * 108.38420 * 309.46415 * 29 16 15
31 31 O 1.42964 * 109.22330 * 52.30106 * 30 29 16
32 32 H 1.08998 * 109.47284 * 299.99866 * 1 2 3
33 33 H 1.09001 * 109.47107 * 60.00073 * 1 2 3
34 34 H 1.09001 * 109.46792 * 179.97438 * 1 2 3
35 35 H 0.97006 * 120.00083 * 95.00474 * 4 2 1
36 36 H 0.96992 * 120.00257 * 179.97438 * 8 7 5
37 37 H 1.09006 * 109.68642 * 307.49836 * 15 13 2
38 38 H 1.09006 * 109.68121 * 68.05146 * 15 13 2
39 39 H 1.07996 * 119.80904 * 359.97438 * 20 19 17
40 40 H 1.08003 * 120.01968 * 180.27400 * 21 20 19
41 41 H 1.07996 * 126.47741 * 359.97438 * 23 22 21
42 42 H 1.08005 * 125.01022 * 180.02562 * 24 23 22
43 43 H 1.08003 * 120.16853 * 0.04592 * 28 27 25
44 44 H 1.08999 * 109.68179 * 189.74383 * 29 16 15
45 45 H 1.08995 * 109.68126 * 69.18654 * 29 16 15
46 46 H 1.09003 * 109.51593 * 292.38119 * 30 29 16
47 47 H 1.08996 * 109.55555 * 172.25350 * 30 29 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0183 -0.6906 1.1961
5 6 2.1491 -0.0075 2.3757
6 1 1.8919 1.0403 2.4244
7 6 2.6113 -0.6620 3.5092
8 7 2.9243 -1.9391 3.4502
9 14 2.7904 0.2700 5.1182
10 1 3.2992 -0.6484 6.1683
11 1 3.7464 1.3918 4.9368
12 1 1.4684 0.8078 5.5285
13 6 2.0401 -0.7211 -1.2493
14 1 3.1265 -0.7981 -1.2072
15 6 1.6295 0.0665 -2.4987
16 7 1.9648 -0.7372 -3.6849
17 6 2.6674 -0.2075 -4.7058
18 8 3.0249 -0.9137 -5.6288
19 6 3.0028 1.2297 -4.7034
20 6 4.2629 1.6527 -5.1508
21 6 4.5821 2.9767 -5.1589
22 6 3.6542 3.9220 -4.7080
23 6 3.6730 5.3787 -4.5795
24 6 2.4804 5.7453 -4.0785
25 7 1.7003 4.6428 -3.8765
26 1 0.7974 4.6562 -3.5223
27 6 2.3873 3.5082 -4.2510
28 6 2.0684 2.1585 -4.2519
29 6 1.5098 -2.1360 -3.7238
30 6 1.9262 -2.8164 -2.4147
31 8 1.4706 -2.0311 -1.3104
32 1 -0.3634 0.5138 0.8900
33 1 -0.3633 0.5138 -0.8900
34 1 -0.3633 -1.0277 -0.0005
35 1 2.2491 -1.6318 1.1526
36 1 3.2476 -2.3963 4.2421
37 1 0.5566 0.2577 -2.4761
38 1 2.1708 1.0121 -2.5309
39 1 4.9827 0.9247 -5.4948
40 1 5.5526 3.2965 -5.5087
41 1 4.4905 6.0355 -4.8375
42 1 2.1829 6.7619 -3.8676
43 1 1.1002 1.8294 -3.9045
44 1 1.9719 -2.6490 -4.5672
45 1 0.4250 -2.1666 -3.8244
46 1 3.0123 -2.9010 -2.3777
47 1 1.4818 -3.8103 -2.3626
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001734178200.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:55:17
Heat of formation + Delta-G solvation = -13.830842 kcal
Electronic energy + Delta-G solvation = -30359.372470 eV
Core-core repulsion = 26314.548897 eV
Total energy + Delta-G solvation = -4044.823573 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.168 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-42.34007 -41.43726 -39.75091 -37.63408 -37.01195 -35.90571 -34.32405 -33.13499
-31.86605 -30.64399 -30.42119 -29.55803 -28.38181 -26.42337 -25.07940 -24.77577
-23.72956 -22.73232 -21.63355 -21.18271 -20.52774 -19.29278 -18.83398 -18.50149
-17.65932 -17.23348 -16.98430 -16.65557 -16.54587 -16.14732 -15.95449 -15.59166
-15.38207 -15.12538 -15.08068 -14.81440 -14.67727 -14.29297 -14.14575 -13.98977
-13.88311 -13.57428 -13.26716 -13.02895 -12.80817 -12.79313 -12.54817 -12.45012
-12.39654 -12.22297 -12.07735 -11.89027 -11.62867 -11.55239 -11.22876 -11.01517
-10.90593 -10.67645 -9.68027 -9.26498 -8.98927 -8.68343 -7.89897 -5.18795
-0.22082 0.46617 1.48215 1.49680 1.51712 1.57614 1.70599 1.92420
2.24838 2.58364 2.75678 2.85377 3.33555 3.43769 3.54955 3.70961
3.85122 3.94131 3.98312 4.03722 4.13332 4.16499 4.30062 4.31752
4.34443 4.35718 4.46891 4.56269 4.60021 4.65320 4.71566 4.75087
4.80624 4.96089 4.97398 5.02313 5.10664 5.19431 5.26842 5.33608
5.48505 5.53298 5.65892 5.66748 5.77031 6.09343 6.15932 6.21816
6.31221 6.69628 6.92551 7.37389 8.13875 8.37420 9.33651
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.009561 B = 0.003476 C = 0.002798
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2927.893860 B = 8053.780163 C =10004.928609
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.179 3.821
3 H 0.065 0.935
4 N -0.735 5.735
5 C -0.238 4.238
6 H 0.080 0.920
7 C -0.077 4.077
8 N -0.971 5.971
9 Si 0.971 3.029
10 H -0.299 1.299
11 H -0.277 1.277
12 H -0.277 1.277
13 C 0.082 3.918
14 H 0.038 0.962
15 C 0.083 3.917
16 N -0.607 5.607
17 C 0.566 3.434
18 O -0.574 6.574
19 C -0.135 4.135
20 C -0.110 4.110
21 C -0.082 4.082
22 C -0.105 4.105
23 C -0.235 4.235
24 C 0.080 3.920
25 N -0.583 5.583
26 H 0.432 0.568
27 C 0.068 3.932
28 C -0.084 4.084
29 C 0.081 3.919
30 C 0.046 3.954
31 O -0.380 6.380
32 H 0.038 0.962
33 H 0.076 0.924
34 H 0.041 0.959
35 H 0.374 0.626
36 H 0.249 0.751
37 H 0.104 0.896
38 H 0.110 0.890
39 H 0.124 0.876
40 H 0.147 0.853
41 H 0.165 0.835
42 H 0.214 0.786
43 H 0.145 0.855
44 H 0.098 0.902
45 H 0.096 0.904
46 H 0.040 0.960
47 H 0.127 0.873
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.213 14.864 -19.655 25.001
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C 0.070 3.930
3 H 0.083 0.917
4 N -0.375 5.375
5 C -0.370 4.370
6 H 0.098 0.902
7 C -0.269 4.269
8 N -0.622 5.622
9 Si 0.800 3.200
10 H -0.226 1.226
11 H -0.203 1.203
12 H -0.203 1.203
13 C 0.023 3.977
14 H 0.056 0.944
15 C -0.040 4.040
16 N -0.339 5.339
17 C 0.357 3.643
18 O -0.454 6.454
19 C -0.140 4.140
20 C -0.131 4.131
21 C -0.101 4.101
22 C -0.110 4.110
23 C -0.259 4.259
24 C -0.048 4.048
25 N -0.187 5.187
26 H 0.272 0.728
27 C -0.040 4.040
28 C -0.105 4.105
29 C -0.041 4.041
30 C -0.032 4.032
31 O -0.298 6.298
32 H 0.057 0.943
33 H 0.095 0.905
34 H 0.061 0.939
35 H 0.205 0.795
36 H 0.058 0.942
37 H 0.122 0.878
38 H 0.128 0.872
39 H 0.142 0.858
40 H 0.164 0.836
41 H 0.182 0.818
42 H 0.231 0.769
43 H 0.163 0.837
44 H 0.117 0.883
45 H 0.114 0.886
46 H 0.059 0.941
47 H 0.144 0.856
Dipole moment (debyes) X Y Z Total
from point charges -4.307 14.591 -19.822 24.987
hybrid contribution 0.299 -0.540 1.068 1.233
sum -4.008 14.051 -18.754 23.774
Atomic orbital electron populations
1.22238 0.96783 1.01136 1.00767 1.20434 0.93907 0.94552 0.84089
0.91719 1.42563 1.78313 1.10471 1.06111 1.19621 1.34866 0.94262
0.88205 0.90205 1.25553 1.03095 0.96799 1.01471 1.69839 1.52642
1.10373 1.29350 0.85247 0.78006 0.77285 0.79440 1.22588 1.20328
1.20269 1.22715 0.96133 0.83840 0.95016 0.94391 1.22879 1.03202
0.95261 0.82670 1.48127 1.54260 1.13202 1.18309 1.18572 0.76494
0.87922 0.81358 1.90739 1.54715 1.62807 1.37158 1.19384 0.96906
0.91356 1.06323 1.20658 0.95405 0.96567 1.00426 1.20402 0.99688
0.90964 0.99030 1.19824 0.93795 0.95303 1.02078 1.22064 1.00349
0.91773 1.11737 1.22605 0.90693 0.92837 0.98620 1.41887 1.16876
1.03854 1.56076 0.72829 1.18133 0.93689 0.88523 1.03625 1.20326
1.00191 0.89387 1.00558 1.22401 1.01324 0.81055 0.99307 1.23081
0.99046 0.95943 0.85102 1.88055 1.67863 1.25915 1.47983 0.94292
0.90529 0.93934 0.79468 0.94235 0.87765 0.87223 0.85802 0.83554
0.81779 0.76907 0.83740 0.88337 0.88603 0.94150 0.85567
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.95 9.06 71.98 0.65 -4.30 16
2 C 0.18 6.73 2.77 44.99 0.12 6.86 16
3 H 0.06 2.33 8.08 -2.38 -0.02 2.31 16
4 N -0.73 -37.08 5.10 -322.94 -1.65 -38.73 16
5 C -0.24 -13.03 9.93 84.03 0.83 -12.19 16
6 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16
7 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16
8 N -0.97 -60.33 13.06 21.65 0.28 -60.04 16
9 Si 0.97 45.90 29.55 68.60 2.03 47.92 16
10 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16
11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16
12 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16
13 C 0.08 2.72 2.61 30.69 0.08 2.80 16
14 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16
15 C 0.08 2.04 4.18 86.35 0.36 2.40 16
16 N -0.61 -15.94 3.02 -821.05 -2.48 -18.42 16
17 C 0.57 16.61 7.32 86.71 0.63 17.24 16
18 O -0.57 -20.24 16.37 -4.01 -0.07 -20.31 16
19 C -0.14 -3.49 5.16 -20.08 -0.10 -3.59 16
20 C -0.11 -2.75 9.54 22.28 0.21 -2.54 16
21 C -0.08 -1.75 10.03 22.20 0.22 -1.53 16
22 C -0.10 -2.14 6.37 -20.14 -0.13 -2.27 16
23 C -0.23 -3.43 11.08 23.49 0.26 -3.17 16
24 C 0.08 0.80 11.81 83.09 0.98 1.78 16
25 N -0.58 -7.13 6.07 -187.72 -1.14 -8.27 16
26 H 0.43 2.75 8.96 -92.71 -0.83 1.92 16
27 C 0.07 1.31 7.26 38.96 0.28 1.59 16
28 C -0.08 -1.75 7.42 22.63 0.17 -1.58 16
29 C 0.08 1.96 6.65 86.35 0.57 2.53 16
30 C 0.05 1.23 6.99 72.08 0.50 1.74 16
31 O -0.38 -12.92 9.24 -148.98 -1.38 -14.30 16
32 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16
33 H 0.08 1.84 6.41 -2.39 -0.02 1.83 16
34 H 0.04 1.54 7.56 -2.39 -0.02 1.52 16
35 H 0.37 20.99 7.58 -92.70 -0.70 20.29 16
36 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16
37 H 0.10 2.13 6.13 -2.38 -0.01 2.12 16
38 H 0.11 2.56 4.95 -2.38 -0.01 2.54 16
39 H 0.12 3.10 8.04 -2.91 -0.02 3.08 16
40 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16
41 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16
42 H 0.21 0.26 8.06 -2.91 -0.02 0.24 16
43 H 0.14 2.43 6.41 -2.91 -0.02 2.42 16
44 H 0.10 2.43 7.06 -2.39 -0.02 2.42 16
45 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16
46 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16
47 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16
Total: -1.00 -77.09 379.64 1.22 -75.87
By element:
Atomic # 1 Polarization: 34.97 SS G_CDS: -0.51 Total: 34.46 kcal
Atomic # 6 Polarization: -4.31 SS G_CDS: 6.13 Total: 1.81 kcal
Atomic # 7 Polarization: -120.48 SS G_CDS: -4.98 Total: -125.46 kcal
Atomic # 8 Polarization: -33.16 SS G_CDS: -1.44 Total: -34.60 kcal
Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.92 kcal
Total: -77.09 1.22 -75.87 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001734178200.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.041 kcal
(2) G-P(sol) polarization free energy of solvation -77.089 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.048 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.217 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.872 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.831 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds