Wall clock time and date at job start Sat Apr 11 2020 06:55:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 S 1.81397 * 109.47263 * 2 1
4 4 O 1.42096 * 110.54147 * 68.37480 * 3 2 1
5 5 O 1.42102 * 110.54230 * 291.62549 * 3 2 1
6 6 N 1.65599 * 104.45145 * 180.02562 * 3 2 1
7 7 C 1.46502 * 119.99998 * 269.99925 * 6 3 2
8 8 C 1.46496 * 120.00278 * 89.99917 * 6 3 2
9 9 C 1.53099 * 109.52851 * 239.68199 * 8 6 3
10 10 C 1.53038 * 109.28740 * 182.43506 * 9 8 6
11 11 N 1.46843 * 109.51815 * 59.18281 * 10 9 8
12 12 C 1.46900 * 110.99969 * 174.15987 * 11 10 9
13 13 C 1.53004 * 109.47015 * 176.32401 * 12 11 10
14 14 H 1.09004 * 109.47182 * 301.94275 * 13 12 11
15 15 C 1.47204 * 109.46664 * 61.94275 * 13 12 11
16 16 N 9.29154 * 160.61475 * 325.32763 * 2 1 3
17 17 C 1.53002 * 109.47256 * 181.93789 * 13 12 11
18 18 C 1.50693 * 109.47089 * 174.99919 * 17 13 12
19 19 H 1.07997 * 120.00257 * 0.02562 * 18 17 13
20 20 C 1.37886 * 119.99893 * 180.02562 * 18 17 13
21 21 N 1.31516 * 119.99670 * 0.02562 * 20 18 17
22 22 Si 1.86799 * 120.00032 * 180.02562 * 20 18 17
23 23 H 1.48506 * 109.47078 * 90.00045 * 22 20 18
24 24 H 1.48493 * 109.47084 * 210.00141 * 22 20 18
25 25 H 1.48502 * 109.47043 * 330.00286 * 22 20 18
26 26 C 1.46838 * 111.19726 * 298.26260 * 11 10 9
27 27 C 1.53039 * 109.52740 * 61.74131 * 26 11 10
28 28 H 1.08991 * 109.46922 * 59.99916 * 1 2 3
29 29 H 1.09000 * 109.46896 * 179.97438 * 1 2 3
30 30 H 1.08999 * 109.46864 * 299.99618 * 1 2 3
31 31 H 1.09003 * 109.47207 * 239.99710 * 2 1 3
32 32 H 1.09001 * 109.47620 * 120.00417 * 2 1 3
33 33 H 1.08999 * 109.47430 * 269.99987 * 7 6 3
34 34 H 1.09001 * 109.47077 * 30.00473 * 7 6 3
35 35 H 1.08997 * 109.46954 * 149.99876 * 7 6 3
36 36 H 1.09005 * 109.57397 * 359.84271 * 8 6 3
37 37 H 1.08995 * 109.48844 * 62.49393 * 9 8 6
38 38 H 1.09001 * 109.49972 * 302.37975 * 9 8 6
39 39 H 1.08992 * 109.46619 * 299.16706 * 10 9 8
40 40 H 1.09007 * 109.45789 * 179.19416 * 10 9 8
41 41 H 1.08996 * 109.47432 * 296.32519 * 12 11 10
42 42 H 1.09006 * 109.47192 * 56.33013 * 12 11 10
43 43 H 1.08998 * 109.47645 * 295.00820 * 17 13 12
44 44 H 1.09011 * 109.46429 * 55.00241 * 17 13 12
45 45 H 0.96998 * 119.99467 * 179.97438 * 21 20 18
46 46 H 1.09007 * 109.46700 * 181.76104 * 26 11 10
47 47 H 1.08999 * 109.46365 * 301.73297 * 26 11 10
48 48 H 1.09001 * 109.50002 * 60.76452 * 27 26 11
49 49 H 1.09001 * 109.50435 * 180.84291 * 27 26 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 16 2.1347 1.7102 0.0000
4 8 1.8386 2.3438 1.2370
5 8 1.8386 2.3438 -1.2370
6 7 3.7843 1.5653 -0.0007
7 6 4.5146 1.5010 1.2677
8 6 4.5135 1.5013 -1.2697
9 6 5.2878 0.1829 -1.3492
10 6 6.0952 0.1484 -2.6488
11 7 7.0245 1.2850 -2.6793
12 6 7.9126 1.2075 -3.8469
13 6 8.8016 2.4519 -3.8948
14 1 8.1764 3.3438 -3.9370
15 6 9.6440 2.4997 -2.6885
16 7 10.2948 2.5364 -1.7545
17 6 9.6928 2.3945 -5.1371
18 6 10.4793 3.6749 -5.2507
19 1 10.3562 4.4517 -4.5107
20 6 11.3561 3.8546 -6.2996
21 7 11.5056 2.9088 -7.2011
22 14 12.3316 5.4415 -6.4401
23 1 13.6190 5.2971 -5.7140
24 1 12.6003 5.7322 -7.8713
25 1 11.5509 6.5566 -5.8465
26 6 6.3015 2.5628 -2.6518
27 6 5.5002 2.6693 -1.3523
28 1 -0.3633 0.5138 -0.8899
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3633 0.5138 0.8900
31 1 1.8934 -0.5139 -0.8900
32 1 1.8934 -0.5139 0.8899
33 1 4.7856 2.5087 1.5824
34 1 3.8831 1.0405 2.0275
35 1 5.4183 0.9058 1.1369
36 1 3.8088 1.5605 -2.0992
37 1 4.5870 -0.6518 -1.3338
38 1 5.9645 0.1066 -0.4981
39 1 5.4168 0.2110 -3.4996
40 1 6.6588 -0.7831 -2.7015
41 1 8.5371 0.3176 -3.7700
42 1 7.3137 1.1538 -4.7561
43 1 10.3797 1.5523 -5.0531
44 1 9.0717 2.2696 -6.0243
45 1 12.1221 3.0354 -7.9392
46 1 7.0150 3.3851 -2.7070
47 1 5.6220 2.6141 -3.5025
48 1 6.1804 2.6320 -0.5013
49 1 4.9520 3.6113 -1.3390
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000121246336.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:55:24
Heat of formation + Delta-G solvation = -48.853407 kcal
Electronic energy + Delta-G solvation = -28663.326462 eV
Core-core repulsion = 24752.428148 eV
Total energy + Delta-G solvation = -3910.898314 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.172 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-39.65154 -37.48416 -37.21094 -36.26209 -35.54295 -33.73178 -33.62711 -32.45126
-31.07007 -30.57743 -27.33122 -26.34930 -24.70562 -23.97304 -23.29995 -22.05697
-21.48508 -19.80984 -19.16769 -18.11481 -16.96351 -16.86995 -16.57555 -16.47944
-15.81761 -15.24696 -14.85453 -14.57314 -14.55162 -14.52997 -14.38832 -13.83139
-13.70718 -13.47329 -13.20776 -12.99409 -12.86121 -12.80513 -12.46252 -12.40141
-12.28929 -12.20079 -12.06418 -12.02703 -11.95737 -11.70370 -11.36109 -11.26442
-11.13033 -11.11810 -11.04404 -10.94778 -10.61982 -10.57844 -10.50550 -10.08933
-9.55895 -9.27034 -9.21238 -8.46891 -8.21788 -6.10992 -4.14087 -0.14192
2.24929 3.29326 3.35946 3.39173 3.47258 3.69433 3.71735 3.78094
3.93651 4.06112 4.28100 4.31232 4.40309 4.62915 4.67285 4.72557
4.85838 4.88519 5.04571 5.07897 5.16010 5.18267 5.24127 5.27293
5.30638 5.36959 5.41388 5.46520 5.50977 5.54581 5.59769 5.68897
5.77605 5.86846 5.96105 6.02241 6.04808 6.23748 6.27967 6.37102
6.48167 7.13499 7.15892 7.40796 7.50680 7.84166 8.21502 8.56177
8.90522 9.51488 10.99879
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.023983 B = 0.002192 C = 0.002182
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1167.190574 B =12767.826901 C =12829.379009
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.634 4.634
3 S 2.604 3.396
4 O -0.954 6.954
5 O -0.951 6.951
6 N -0.997 5.997
7 C 0.092 3.908
8 C 0.145 3.855
9 C -0.127 4.127
10 C 0.058 3.942
11 N -0.542 5.542
12 C 0.064 3.936
13 C 0.005 3.995
14 H 0.102 0.898
15 C 0.254 3.746
16 N -0.477 5.477
17 C 0.032 3.968
18 C -0.526 4.526
19 H 0.056 0.944
20 C 0.062 3.938
21 N -0.891 5.891
22 Si 0.892 3.108
23 H -0.280 1.280
24 H -0.285 1.285
25 H -0.273 1.273
26 C 0.047 3.953
27 C -0.120 4.120
28 H 0.072 0.928
29 H 0.081 0.919
30 H 0.071 0.929
31 H 0.131 0.869
32 H 0.130 0.870
33 H 0.061 0.939
34 H 0.067 0.933
35 H 0.078 0.922
36 H 0.099 0.901
37 H 0.066 0.934
38 H 0.080 0.920
39 H 0.037 0.963
40 H 0.079 0.921
41 H 0.082 0.918
42 H 0.054 0.946
43 H 0.026 0.974
44 H 0.037 0.963
45 H 0.262 0.738
46 H 0.089 0.911
47 H 0.041 0.959
48 H 0.077 0.923
49 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.436 -9.722 12.871 27.632
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.763 4.763
3 S 2.697 3.303
4 O -0.944 6.944
5 O -0.941 6.941
6 N -0.834 5.834
7 C -0.053 4.053
8 C 0.039 3.961
9 C -0.167 4.167
10 C -0.071 4.071
11 N -0.267 5.267
12 C -0.065 4.065
13 C -0.017 4.017
14 H 0.120 0.880
15 C -0.063 4.063
16 N -0.154 5.154
17 C -0.007 4.007
18 C -0.564 4.564
19 H 0.075 0.925
20 C -0.140 4.140
21 N -0.530 5.530
22 Si 0.719 3.281
23 H -0.206 1.206
24 H -0.211 1.211
25 H -0.197 1.197
26 C -0.081 4.081
27 C -0.160 4.160
28 H 0.091 0.909
29 H 0.100 0.900
30 H 0.090 0.910
31 H 0.150 0.850
32 H 0.148 0.852
33 H 0.079 0.921
34 H 0.086 0.914
35 H 0.096 0.904
36 H 0.117 0.883
37 H 0.085 0.915
38 H 0.098 0.902
39 H 0.055 0.945
40 H 0.098 0.902
41 H 0.100 0.900
42 H 0.072 0.928
43 H 0.045 0.955
44 H 0.056 0.944
45 H 0.072 0.928
46 H 0.107 0.893
47 H 0.059 0.941
48 H 0.095 0.905
49 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -21.565 -8.932 14.571 27.516
hybrid contribution 0.139 0.059 -1.238 1.248
sum -21.425 -8.874 13.333 26.750
Atomic orbital electron populations
1.21506 0.90551 1.05077 1.03480 1.30582 1.07181 1.26984 1.11572
1.05301 0.73091 0.77515 0.74356 1.93597 1.83267 1.72328 1.45246
1.93606 1.83141 1.72279 1.45087 1.57522 1.24261 1.89592 1.12013
1.21461 0.97889 1.02794 0.83180 1.21084 0.94575 0.96103 0.84315
1.21997 0.98892 0.96384 0.99389 1.22013 0.94173 0.94842 0.96082
1.62010 1.20393 1.01961 1.42290 1.22233 0.94430 0.98888 0.90929
1.19357 0.94407 0.98262 0.89681 0.88022 1.28947 0.92489 0.91855
0.92972 1.81111 1.11248 1.09856 1.13205 1.19170 0.93914 0.98345
0.89258 1.21129 1.23788 1.01676 1.09832 0.92527 1.24955 0.96730
0.96670 0.95627 1.69937 1.36701 1.32970 1.13391 0.86591 0.80549
0.83714 0.77208 1.20645 1.21109 1.19739 1.22222 0.96671 0.92937
0.96319 1.21889 0.97368 0.97635 0.99069 0.90897 0.90000 0.91007
0.85028 0.85157 0.92069 0.91388 0.90378 0.88287 0.91506 0.90156
0.94462 0.90231 0.89970 0.92828 0.95537 0.94433 0.92794 0.89274
0.94062 0.90456 0.90946
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.74 9.92 37.16 0.37 -0.37 16
2 C -0.63 -3.19 6.90 37.16 0.26 -2.94 16
3 S 2.60 22.86 5.37 -107.50 -0.58 22.28 16
4 O -0.95 -11.16 17.09 -57.54 -0.98 -12.14 16
5 O -0.95 -11.37 16.57 -57.54 -0.95 -12.33 16
6 N -1.00 -8.16 3.01 -114.49 -0.34 -8.50 16
7 C 0.09 0.65 9.22 59.85 0.55 1.20 16
8 C 0.14 1.30 2.52 -67.82 -0.17 1.13 16
9 C -0.13 -1.01 5.39 -26.66 -0.14 -1.15 16
10 C 0.06 0.55 5.46 -3.84 -0.02 0.53 16
11 N -0.54 -6.67 4.38 -234.67 -1.03 -7.69 16
12 C 0.06 0.89 4.52 -3.82 -0.02 0.87 16
13 C 0.00 0.08 1.76 -93.40 -0.16 -0.08 16
14 H 0.10 1.70 6.07 -51.93 -0.32 1.38 16
15 C 0.25 5.15 13.47 -20.66 -0.28 4.87 16
16 N -0.48 -10.55 18.56 42.27 0.78 -9.76 16
17 C 0.03 0.72 4.42 -27.89 -0.12 0.59 16
18 C -0.53 -13.82 8.60 -34.44 -0.30 -14.12 16
19 H 0.06 1.48 7.59 -52.49 -0.40 1.09 16
20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16
21 N -0.89 -25.28 13.29 55.43 0.74 -24.55 16
22 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16
23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16
25 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16
26 C 0.05 0.56 5.03 -3.84 -0.02 0.54 16
27 C -0.12 -1.28 5.41 -26.65 -0.14 -1.43 16
28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16
29 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16
30 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16
31 H 0.13 0.48 8.14 -51.92 -0.42 0.06 16
32 H 0.13 0.43 8.14 -51.92 -0.42 0.01 16
33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
34 H 0.07 0.37 7.79 -51.93 -0.40 -0.04 16
35 H 0.08 0.49 6.37 -51.93 -0.33 0.16 16
36 H 0.10 0.90 6.88 -51.93 -0.36 0.55 16
37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16
38 H 0.08 0.68 6.57 -51.93 -0.34 0.34 16
39 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16
40 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16
41 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16
42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16
43 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16
44 H 0.04 0.86 8.14 -51.92 -0.42 0.44 16
45 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16
46 H 0.09 1.17 5.71 -51.93 -0.30 0.87 16
47 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16
48 H 0.08 0.87 7.60 -51.93 -0.39 0.47 16
49 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16
LS Contribution 402.20 15.07 6.06 6.06
Total: -1.00 -34.19 402.20 -9.94 -44.13
By element:
Atomic # 1 Polarization: 3.37 SS G_CDS: -8.31 Total: -4.94 kcal
Atomic # 6 Polarization: -8.44 SS G_CDS: -0.30 Total: -8.74 kcal
Atomic # 7 Polarization: -50.65 SS G_CDS: 0.15 Total: -50.51 kcal
Atomic # 8 Polarization: -22.53 SS G_CDS: -1.94 Total: -24.47 kcal
Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal
Atomic # 16 Polarization: 22.86 SS G_CDS: -0.58 Total: 22.28 kcal
Total LS contribution 6.06 Total: 6.06 kcal
Total: -34.19 -9.94 -44.13 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000121246336.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -4.724 kcal
(2) G-P(sol) polarization free energy of solvation -34.192 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.916 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.938 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.130 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.853 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds