Wall clock time and date at job start Sat Apr 11 2020 06:55:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 S 1.81397 * 109.47263 * 2 1
4 4 O 1.42096 * 110.54147 * 68.37480 * 3 2 1
5 5 O 1.42102 * 110.54230 * 291.62549 * 3 2 1
6 6 N 1.65599 * 104.45145 * 180.02562 * 3 2 1
7 7 C 1.46502 * 119.99998 * 269.99925 * 6 3 2
8 8 C 1.46496 * 120.00278 * 89.99917 * 6 3 2
9 9 C 1.53099 * 109.52851 * 239.68199 * 8 6 3
10 10 C 1.53038 * 109.28740 * 182.43506 * 9 8 6
11 11 N 1.46843 * 109.51815 * 59.18281 * 10 9 8
12 12 C 1.46900 * 110.99969 * 174.15987 * 11 10 9
13 13 C 1.53004 * 109.47015 * 176.32401 * 12 11 10
14 14 H 1.09004 * 109.47182 * 301.94275 * 13 12 11
15 15 C 1.47204 * 109.46664 * 61.94275 * 13 12 11
16 16 N 9.29154 * 160.61475 * 325.32763 * 2 1 3
17 17 C 1.53002 * 109.47256 * 181.93789 * 13 12 11
18 18 C 1.50693 * 109.47089 * 174.99919 * 17 13 12
19 19 H 1.07997 * 120.00257 * 0.02562 * 18 17 13
20 20 C 1.37886 * 119.99893 * 180.02562 * 18 17 13
21 21 N 1.31516 * 119.99670 * 0.02562 * 20 18 17
22 22 Si 1.86799 * 120.00032 * 180.02562 * 20 18 17
23 23 H 1.48506 * 109.47078 * 90.00045 * 22 20 18
24 24 H 1.48493 * 109.47084 * 210.00141 * 22 20 18
25 25 H 1.48502 * 109.47043 * 330.00286 * 22 20 18
26 26 C 1.46838 * 111.19726 * 298.26260 * 11 10 9
27 27 C 1.53039 * 109.52740 * 61.74131 * 26 11 10
28 28 H 1.08991 * 109.46922 * 59.99916 * 1 2 3
29 29 H 1.09000 * 109.46896 * 179.97438 * 1 2 3
30 30 H 1.08999 * 109.46864 * 299.99618 * 1 2 3
31 31 H 1.09003 * 109.47207 * 239.99710 * 2 1 3
32 32 H 1.09001 * 109.47620 * 120.00417 * 2 1 3
33 33 H 1.08999 * 109.47430 * 269.99987 * 7 6 3
34 34 H 1.09001 * 109.47077 * 30.00473 * 7 6 3
35 35 H 1.08997 * 109.46954 * 149.99876 * 7 6 3
36 36 H 1.09005 * 109.57397 * 359.84271 * 8 6 3
37 37 H 1.08995 * 109.48844 * 62.49393 * 9 8 6
38 38 H 1.09001 * 109.49972 * 302.37975 * 9 8 6
39 39 H 1.08992 * 109.46619 * 299.16706 * 10 9 8
40 40 H 1.09007 * 109.45789 * 179.19416 * 10 9 8
41 41 H 1.08996 * 109.47432 * 296.32519 * 12 11 10
42 42 H 1.09006 * 109.47192 * 56.33013 * 12 11 10
43 43 H 1.08998 * 109.47645 * 295.00820 * 17 13 12
44 44 H 1.09011 * 109.46429 * 55.00241 * 17 13 12
45 45 H 0.96998 * 119.99467 * 179.97438 * 21 20 18
46 46 H 1.09007 * 109.46700 * 181.76104 * 26 11 10
47 47 H 1.08999 * 109.46365 * 301.73297 * 26 11 10
48 48 H 1.09001 * 109.50002 * 60.76452 * 27 26 11
49 49 H 1.09001 * 109.50435 * 180.84291 * 27 26 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 16 2.1347 1.7102 0.0000
4 8 1.8386 2.3438 1.2370
5 8 1.8386 2.3438 -1.2370
6 7 3.7843 1.5653 -0.0007
7 6 4.5146 1.5010 1.2677
8 6 4.5135 1.5013 -1.2697
9 6 5.2878 0.1829 -1.3492
10 6 6.0952 0.1484 -2.6488
11 7 7.0245 1.2850 -2.6793
12 6 7.9126 1.2075 -3.8469
13 6 8.8016 2.4519 -3.8948
14 1 8.1764 3.3438 -3.9370
15 6 9.6440 2.4997 -2.6885
16 7 10.2948 2.5364 -1.7545
17 6 9.6928 2.3945 -5.1371
18 6 10.4793 3.6749 -5.2507
19 1 10.3562 4.4517 -4.5107
20 6 11.3561 3.8546 -6.2996
21 7 11.5056 2.9088 -7.2011
22 14 12.3316 5.4415 -6.4401
23 1 13.6190 5.2971 -5.7140
24 1 12.6003 5.7322 -7.8713
25 1 11.5509 6.5566 -5.8465
26 6 6.3015 2.5628 -2.6518
27 6 5.5002 2.6693 -1.3523
28 1 -0.3633 0.5138 -0.8899
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3633 0.5138 0.8900
31 1 1.8934 -0.5139 -0.8900
32 1 1.8934 -0.5139 0.8899
33 1 4.7856 2.5087 1.5824
34 1 3.8831 1.0405 2.0275
35 1 5.4183 0.9058 1.1369
36 1 3.8088 1.5605 -2.0992
37 1 4.5870 -0.6518 -1.3338
38 1 5.9645 0.1066 -0.4981
39 1 5.4168 0.2110 -3.4996
40 1 6.6588 -0.7831 -2.7015
41 1 8.5371 0.3176 -3.7700
42 1 7.3137 1.1538 -4.7561
43 1 10.3797 1.5523 -5.0531
44 1 9.0717 2.2696 -6.0243
45 1 12.1221 3.0354 -7.9392
46 1 7.0150 3.3851 -2.7070
47 1 5.6220 2.6141 -3.5025
48 1 6.1804 2.6320 -0.5013
49 1 4.9520 3.6113 -1.3390
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000121246336.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:55:23
Heat of formation + Delta-G solvation = -72.614483 kcal
Electronic energy + Delta-G solvation = -28664.356820 eV
Core-core repulsion = 24752.428148 eV
Total energy + Delta-G solvation = -3911.928672 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.172 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-40.52749 -38.43095 -38.20488 -37.05716 -36.73227 -35.48133 -34.02739 -33.94072
-32.01389 -31.66129 -28.55910 -27.41418 -25.52844 -24.75284 -24.30870 -23.45280
-22.71127 -20.58120 -19.83307 -18.78671 -18.55208 -18.09281 -17.58782 -17.38849
-16.84325 -16.43266 -15.89611 -15.81298 -15.47519 -15.17004 -15.08304 -14.95211
-14.51892 -14.43978 -14.17986 -14.06447 -13.96511 -13.68128 -13.53315 -13.41174
-13.33852 -13.22218 -13.10103 -13.01592 -12.94353 -12.80322 -12.66048 -12.48094
-12.40110 -12.36228 -12.07371 -12.02290 -11.96119 -11.70213 -11.47146 -11.32079
-11.25686 -11.00280 -10.54913 -9.89480 -9.14997 -8.19372 -6.27103 -0.76467
1.39698 1.42070 1.50941 1.61772 2.06824 2.14007 2.41418 2.88041
2.97114 3.11718 3.16315 3.36831 3.55439 3.76189 3.86963 3.88352
4.04221 4.12326 4.13136 4.34167 4.37280 4.39461 4.50468 4.56029
4.65064 4.66083 4.70493 4.75246 4.79052 4.82529 4.87193 4.95508
4.98068 5.03076 5.05877 5.09929 5.11034 5.25249 5.25503 5.47441
5.51693 5.61948 5.63028 5.79706 6.11711 6.22423 6.28537 6.83898
6.94770 7.41239 8.91437
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.023983 B = 0.002192 C = 0.002182
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1167.190574 B =12767.826901 C =12829.379009
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C -0.606 4.606
3 S 2.598 3.402
4 O -0.993 6.993
5 O -0.992 6.992
6 N -0.997 5.997
7 C 0.087 3.913
8 C 0.147 3.853
9 C -0.120 4.120
10 C 0.054 3.946
11 N -0.552 5.552
12 C 0.074 3.926
13 C 0.015 3.985
14 H 0.115 0.885
15 C 0.265 3.735
16 N -0.511 5.511
17 C 0.038 3.962
18 C -0.538 4.538
19 H 0.052 0.948
20 C 0.012 3.988
21 N -0.922 5.922
22 Si 0.946 3.054
23 H -0.284 1.284
24 H -0.278 1.278
25 H -0.266 1.266
26 C 0.047 3.953
27 C -0.119 4.119
28 H 0.069 0.931
29 H 0.104 0.896
30 H 0.070 0.930
31 H 0.156 0.844
32 H 0.157 0.843
33 H 0.044 0.956
34 H 0.086 0.914
35 H 0.088 0.912
36 H 0.100 0.900
37 H 0.099 0.901
38 H 0.076 0.924
39 H 0.049 0.951
40 H 0.088 0.912
41 H 0.081 0.919
42 H 0.070 0.930
43 H 0.003 0.997
44 H 0.035 0.965
45 H 0.264 0.736
46 H 0.071 0.929
47 H 0.049 0.951
48 H 0.067 0.933
49 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.936 -11.446 13.272 29.666
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C -0.739 4.739
3 S 2.697 3.303
4 O -0.983 6.983
5 O -0.982 6.982
6 N -0.833 5.833
7 C -0.058 4.058
8 C 0.041 3.959
9 C -0.159 4.159
10 C -0.074 4.074
11 N -0.277 5.277
12 C -0.055 4.055
13 C -0.007 4.007
14 H 0.133 0.867
15 C -0.051 4.051
16 N -0.189 5.189
17 C 0.000 4.000
18 C -0.576 4.576
19 H 0.070 0.930
20 C -0.187 4.187
21 N -0.562 5.562
22 Si 0.772 3.228
23 H -0.210 1.210
24 H -0.203 1.203
25 H -0.190 1.190
26 C -0.082 4.082
27 C -0.159 4.159
28 H 0.088 0.912
29 H 0.123 0.877
30 H 0.089 0.911
31 H 0.174 0.826
32 H 0.175 0.825
33 H 0.063 0.937
34 H 0.105 0.895
35 H 0.106 0.894
36 H 0.118 0.882
37 H 0.117 0.883
38 H 0.095 0.905
39 H 0.067 0.933
40 H 0.106 0.894
41 H 0.100 0.900
42 H 0.088 0.912
43 H 0.021 0.979
44 H 0.054 0.946
45 H 0.073 0.927
46 H 0.089 0.911
47 H 0.068 0.932
48 H 0.086 0.914
49 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges -23.061 -10.607 14.985 29.476
hybrid contribution 0.554 0.556 -1.337 1.551
sum -22.506 -10.051 13.648 28.175
Atomic orbital electron populations
1.21698 0.90396 1.06509 1.03487 1.30339 1.07131 1.22292 1.14153
1.05253 0.73018 0.79237 0.72793 1.93544 1.83742 1.74712 1.46347
1.93550 1.83666 1.74713 1.46285 1.57351 1.23999 1.89948 1.12010
1.21579 0.98707 1.02318 0.83226 1.21032 0.94236 0.95923 0.84748
1.21977 0.99033 0.96624 0.98285 1.22157 0.94062 0.93788 0.97441
1.61982 1.21395 1.03066 1.41266 1.22061 0.94376 0.96484 0.92578
1.19316 0.93840 1.01108 0.86441 0.86728 1.29406 0.91939 0.90733
0.93008 1.81105 1.12138 1.11232 1.14413 1.18987 0.93822 0.95839
0.91389 1.21543 1.23916 1.02842 1.09333 0.92967 1.25693 0.97918
0.99438 0.95674 1.70024 1.37603 1.34550 1.14009 0.85728 0.78996
0.80654 0.77413 1.21000 1.20342 1.18994 1.22186 0.96424 0.92320
0.97232 1.21849 0.97515 0.98422 0.98101 0.91157 0.87703 0.91105
0.82621 0.82513 0.93671 0.89511 0.89353 0.88233 0.88267 0.90530
0.93318 0.89392 0.90009 0.91221 0.97867 0.94649 0.92712 0.91096
0.93247 0.91392 0.91786
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.15 9.92 71.98 0.71 -0.43 16
2 C -0.61 -3.91 6.90 71.98 0.50 -3.41 16
3 S 2.60 42.66 5.37 -56.49 -0.30 42.35 16
4 O -0.99 -23.06 17.09 -127.65 -2.18 -25.24 16
5 O -0.99 -23.45 16.57 -127.65 -2.12 -25.57 16
6 N -1.00 -14.86 3.01 -516.13 -1.55 -16.41 16
7 C 0.09 1.12 9.22 127.77 1.18 2.30 16
8 C 0.15 2.38 2.52 45.06 0.11 2.50 16
9 C -0.12 -1.53 5.39 30.64 0.17 -1.36 16
10 C 0.05 0.87 5.46 86.33 0.47 1.34 16
11 N -0.55 -12.71 4.38 -896.37 -3.93 -16.64 16
12 C 0.07 1.96 4.52 86.30 0.39 2.35 16
13 C 0.01 0.51 1.76 -12.60 -0.02 0.49 16
14 H 0.12 3.78 6.07 -2.39 -0.01 3.76 16
15 C 0.27 10.74 13.47 89.41 1.20 11.95 16
16 N -0.51 -22.69 18.56 20.04 0.37 -22.32 16
17 C 0.04 1.74 4.42 29.85 0.13 1.88 16
18 C -0.54 -28.39 8.60 25.60 0.22 -28.17 16
19 H 0.05 2.74 7.59 -2.91 -0.02 2.72 16
20 C 0.01 0.65 5.46 84.66 0.46 1.11 16
21 N -0.92 -52.62 13.29 21.45 0.28 -52.34 16
22 Si 0.95 43.47 29.54 68.60 2.03 45.50 16
23 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16
24 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16
25 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16
26 C 0.05 1.07 5.03 86.33 0.43 1.51 16
27 C -0.12 -2.50 5.41 30.65 0.17 -2.34 16
28 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16
29 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16
30 H 0.07 0.52 8.14 -2.39 -0.02 0.51 16
31 H 0.16 0.38 8.14 -2.39 -0.02 0.36 16
32 H 0.16 0.30 8.14 -2.39 -0.02 0.28 16
33 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16
34 H 0.09 0.78 7.79 -2.39 -0.02 0.76 16
35 H 0.09 0.96 6.37 -2.39 -0.02 0.94 16
36 H 0.10 1.64 6.88 -2.38 -0.02 1.62 16
37 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16
38 H 0.08 1.07 6.57 -2.39 -0.02 1.06 16
39 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16
40 H 0.09 1.31 8.12 -2.38 -0.02 1.29 16
41 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16
42 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16
43 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16
44 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16
45 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16
46 H 0.07 1.85 5.71 -2.38 -0.01 1.84 16
47 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16
48 H 0.07 1.53 7.60 -2.39 -0.02 1.51 16
49 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16
Total: -1.00 -74.77 402.20 -0.35 -75.12
By element:
Atomic # 1 Polarization: 4.92 SS G_CDS: 0.92 Total: 5.85 kcal
Atomic # 6 Polarization: -16.43 SS G_CDS: 6.13 Total: -10.30 kcal
Atomic # 7 Polarization: -102.88 SS G_CDS: -4.82 Total: -107.70 kcal
Atomic # 8 Polarization: -46.51 SS G_CDS: -4.30 Total: -50.81 kcal
Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal
Atomic # 16 Polarization: 42.66 SS G_CDS: -0.30 Total: 42.35 kcal
Total: -74.77 -0.35 -75.12 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000121246336.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 2.503 kcal
(2) G-P(sol) polarization free energy of solvation -74.772 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.269 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.345 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.118 kcal
(6) G-S(sol) free energy of system = (1) + (5) -72.614 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds