Wall clock time and date at job start Sat Apr 11 2020 06:54:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 N 1.46497 * 109.46892 * 2 1
4 4 C 1.36881 * 126.39741 * 265.02250 * 3 2 1
5 5 C 1.34669 * 106.81689 * 180.02562 * 4 3 2
6 6 N 1.34124 * 108.02185 * 0.02562 * 5 4 3
7 7 C 1.30503 * 109.25475 * 359.72312 * 6 5 4
8 8 C 1.50701 * 125.65058 * 180.29002 * 7 6 5
9 9 H 1.09000 * 109.46984 * 165.17612 * 8 7 6
10 10 C 1.53003 * 109.47222 * 285.17951 * 8 7 6
11 11 N 1.46498 * 109.47044 * 45.18160 * 8 7 6
12 12 C 1.34779 * 120.00417 * 154.99958 * 11 8 7
13 13 O 1.21279 * 119.99518 * 359.97438 * 12 11 8
14 14 C 1.50701 * 120.00285 * 179.97438 * 12 11 8
15 15 C 1.50697 * 109.47162 * 179.97438 * 14 12 11
16 16 C 1.38319 * 119.96902 * 269.72845 * 15 14 12
17 17 C 1.38274 * 120.13867 * 179.76872 * 16 15 14
18 18 C 1.38124 * 120.07236 * 0.49940 * 17 16 15
19 19 C 1.38862 * 119.92559 * 359.75626 * 18 17 16
20 20 O 1.35747 * 120.06535 * 179.97438 * 19 18 17
21 21 C 1.34830 * 117.00367 * 354.48345 * 20 19 18
22 22 H 1.08004 * 120.00015 * 5.05519 * 21 20 19
23 23 C 1.38651 * 120.00147 * 185.06337 * 21 20 19
24 24 N 1.31559 * 120.00056 * 0.02562 * 23 21 20
25 25 Si 1.86802 * 120.00132 * 179.97438 * 23 21 20
26 26 H 1.48504 * 109.47109 * 59.99686 * 25 23 21
27 27 H 1.48496 * 109.47387 * 179.97438 * 25 23 21
28 28 H 1.48500 * 109.46989 * 299.99958 * 25 23 21
29 29 C 1.38080 * 119.96297 * 89.99635 * 15 14 12
30 30 H 1.08995 * 109.47527 * 299.99814 * 1 2 3
31 31 H 1.09006 * 109.47258 * 60.00098 * 1 2 3
32 32 H 1.09001 * 109.47184 * 179.97438 * 1 2 3
33 33 H 1.08996 * 109.46806 * 120.00190 * 2 1 3
34 34 H 1.09008 * 109.46917 * 240.00188 * 2 1 3
35 35 H 1.07997 * 126.59210 * 0.03936 * 4 3 2
36 36 H 1.08007 * 125.98947 * 179.97438 * 5 4 3
37 37 H 1.08999 * 109.46902 * 299.99718 * 10 8 7
38 38 H 1.08996 * 109.46598 * 60.00268 * 10 8 7
39 39 H 1.09003 * 109.46654 * 179.97438 * 10 8 7
40 40 H 0.97005 * 119.99740 * 334.99233 * 11 8 7
41 41 H 1.08995 * 109.47022 * 300.00129 * 14 12 11
42 42 H 1.09003 * 109.46969 * 59.99543 * 14 12 11
43 43 H 1.08007 * 119.92884 * 359.97438 * 16 15 14
44 44 H 1.08003 * 119.96353 * 180.25247 * 17 16 15
45 45 H 1.07998 * 120.03779 * 179.72113 * 18 17 16
46 46 H 0.97004 * 119.99889 * 180.02562 * 24 23 21
47 47 H 1.08000 * 120.03487 * 359.96234 * 29 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.3791 2.1151 -1.0976
5 6 2.7656 3.3243 -0.6480
6 7 2.6446 3.3283 0.6878
7 6 2.1922 2.1696 1.0825
8 6 1.9132 1.7755 2.5101
9 1 1.3075 0.8695 2.5251
10 6 3.2353 1.5174 3.2356
11 7 1.1901 2.8575 3.1829
12 6 0.4054 2.5855 4.2444
13 8 0.2976 1.4449 4.6423
14 6 -0.3380 3.6986 4.9368
15 6 -1.1368 3.1325 6.0825
16 6 -2.4379 2.7111 5.8759
17 6 -3.1724 2.1867 6.9236
18 6 -2.6120 2.0917 8.1824
19 6 -1.3078 2.5189 8.3942
20 8 -0.7544 2.4273 9.6304
21 6 -1.5591 2.0202 10.6327
22 1 -2.5702 1.7060 10.4197
23 6 -1.0886 2.0050 11.9368
24 7 0.1429 2.3884 12.1964
25 14 -2.2037 1.4416 13.3256
26 1 -2.6290 0.0399 13.0813
27 1 -1.4679 1.5179 14.6132
28 1 -3.4005 2.3186 13.3862
29 6 -0.5708 3.0402 7.3386
30 1 -0.3634 0.5138 0.8899
31 1 -0.3634 0.5138 -0.8900
32 1 -0.3633 -1.0277 -0.0005
33 1 1.8932 -0.5139 0.8900
34 1 1.8933 -0.5138 -0.8901
35 1 2.3577 1.7876 -2.1265
36 1 3.1130 4.1463 -1.2563
37 1 3.7732 0.7123 2.7350
38 1 3.8409 2.4235 3.2206
39 1 3.0334 1.2328 4.2683
40 1 1.2761 3.7697 2.8644
41 1 0.3750 4.4302 5.3169
42 1 -1.0112 4.1815 4.2285
43 1 -2.8800 2.7887 4.8935
44 1 -4.1868 1.8547 6.7582
45 1 -3.1877 1.6863 9.0013
46 1 0.4721 2.3774 13.1088
47 1 0.4439 3.3729 7.5001
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000857280731.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:54:20
Heat of formation + Delta-G solvation = 20.484291 kcal
Electronic energy + Delta-G solvation = -28916.947539 eV
Core-core repulsion = 24873.611981 eV
Total energy + Delta-G solvation = -4043.335557 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.168 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-42.52491 -39.81222 -38.74297 -36.53296 -35.47451 -35.40001 -32.44591 -32.10345
-31.03672 -30.51391 -29.12543 -28.79359 -26.96155 -25.19730 -24.49735 -23.62792
-21.93929 -21.56940 -21.04322 -20.04013 -19.89966 -17.90653 -17.50180 -16.88820
-16.70652 -16.15286 -15.73304 -15.30514 -15.23378 -14.87601 -14.44111 -14.30702
-14.16417 -14.05693 -13.84017 -13.58838 -13.46809 -13.37272 -13.11138 -12.89309
-12.57916 -12.45810 -12.36975 -12.21897 -11.86205 -11.78013 -11.54170 -11.41165
-11.20367 -10.77446 -10.71887 -10.55368 -10.41157 -10.29560 -9.98825 -9.73735
-9.27048 -9.19897 -8.76961 -8.72704 -7.98717 -7.14204 -6.37457 -3.96447
1.62878 2.15074 2.33436 2.47204 2.76127 2.82174 3.17516 3.18305
3.21310 3.32325 3.93669 4.02529 4.14378 4.41553 4.45656 4.61064
4.68710 4.80502 4.96362 5.00909 5.04069 5.15056 5.17298 5.18754
5.21261 5.33210 5.37249 5.48909 5.58431 5.59399 5.72520 5.75389
5.83600 5.91742 6.00602 6.06740 6.25140 6.35337 6.41698 6.44773
6.73486 6.77457 6.99669 7.14172 7.34728 7.43916 7.51034 7.53419
7.75810 7.90699 8.07626 8.33842 9.08180 9.79823 10.80798
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.021131 B = 0.002035 C = 0.001988
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1324.774418 B =13753.739269 C =14078.979198
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C 0.095 3.905
3 N -0.449 5.449
4 C -0.055 4.055
5 C -0.027 4.027
6 N -0.481 5.481
7 C 0.199 3.801
8 C 0.234 3.766
9 H 0.097 0.903
10 C -0.158 4.158
11 N -0.725 5.725
12 C 0.518 3.482
13 O -0.520 6.520
14 C -0.093 4.093
15 C -0.032 4.032
16 C -0.197 4.197
17 C -0.075 4.075
18 C -0.231 4.231
19 C 0.155 3.845
20 O -0.180 6.180
21 C -0.390 4.390
22 H 0.091 0.909
23 C 0.038 3.962
24 N -0.865 5.865
25 Si 0.940 3.060
26 H -0.270 1.270
27 H -0.278 1.278
28 H -0.270 1.270
29 C -0.173 4.173
30 H 0.066 0.934
31 H 0.063 0.937
32 H 0.080 0.920
33 H 0.095 0.905
34 H 0.095 0.905
35 H 0.174 0.826
36 H 0.171 0.829
37 H 0.061 0.939
38 H 0.068 0.932
39 H 0.076 0.924
40 H 0.408 0.592
41 H 0.102 0.898
42 H 0.098 0.902
43 H 0.102 0.898
44 H 0.106 0.894
45 H 0.126 0.874
46 H 0.269 0.731
47 H 0.114 0.886
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.682 -1.473 -27.125 27.297
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.229 4.229
2 C -0.027 4.027
3 N -0.132 5.132
4 C -0.188 4.188
5 C -0.176 4.176
6 N -0.200 5.200
7 C -0.063 4.063
8 C 0.127 3.873
9 H 0.115 0.885
10 C -0.217 4.217
11 N -0.380 5.380
12 C 0.304 3.696
13 O -0.395 6.395
14 C -0.133 4.133
15 C -0.032 4.032
16 C -0.216 4.216
17 C -0.093 4.093
18 C -0.250 4.250
19 C 0.101 3.899
20 O -0.083 6.083
21 C -0.467 4.467
22 H 0.108 0.892
23 C -0.166 4.166
24 N -0.500 5.500
25 Si 0.765 3.235
26 H -0.196 1.196
27 H -0.203 1.203
28 H -0.196 1.196
29 C -0.193 4.193
30 H 0.086 0.914
31 H 0.082 0.918
32 H 0.099 0.901
33 H 0.113 0.887
34 H 0.114 0.886
35 H 0.192 0.808
36 H 0.188 0.812
37 H 0.080 0.920
38 H 0.088 0.912
39 H 0.095 0.905
40 H 0.244 0.756
41 H 0.120 0.880
42 H 0.116 0.884
43 H 0.120 0.880
44 H 0.124 0.876
45 H 0.143 0.857
46 H 0.079 0.921
47 H 0.132 0.868
Dipole moment (debyes) X Y Z Total
from point charges 3.117 -1.751 -26.015 26.260
hybrid contribution -0.697 -0.596 -0.286 0.961
sum 2.420 -2.346 -26.302 26.517
Atomic orbital electron populations
1.22174 0.93599 1.03649 1.03465 1.21956 0.96125 0.79736 1.04911
1.45456 1.48284 1.12757 1.06673 1.22735 1.09314 0.94101 0.92639
1.22314 1.06696 0.97398 0.91158 1.70154 1.18124 1.19456 1.12230
1.23201 1.04188 0.88123 0.90832 1.18933 0.94497 0.91440 0.82437
0.88482 1.22161 0.95606 1.02499 1.01439 1.46009 1.48465 1.11081
1.32463 1.20801 0.78454 0.90902 0.79393 1.90749 1.62841 1.22334
1.63532 1.20578 0.99252 0.96596 0.96848 1.18650 0.93659 0.98820
0.92099 1.20337 0.94935 1.08142 0.98154 1.20665 0.98353 0.97656
0.92670 1.21166 0.96734 1.09221 0.97927 1.19279 0.91283 0.92389
0.86922 1.83977 1.37321 1.74704 1.12330 1.21261 0.96261 1.44357
0.84806 0.89211 1.25268 0.96799 0.97009 0.97486 1.70035 1.14974
1.44104 1.20888 0.85797 0.79140 0.79253 0.79314 1.19568 1.20341
1.19553 1.19954 1.00195 1.07850 0.91278 0.91449 0.91792 0.90137
0.88670 0.88647 0.80849 0.81192 0.91996 0.91245 0.90543 0.75640
0.88013 0.88369 0.88031 0.87560 0.85671 0.92078 0.86780
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.00 10.24 37.16 0.38 -0.62 16
2 C 0.09 0.53 6.32 -4.04 -0.03 0.50 16
3 N -0.45 -3.71 2.75 -113.91 -0.31 -4.02 16
4 C -0.05 -0.41 11.58 -16.56 -0.19 -0.60 16
5 C -0.03 -0.25 11.87 -17.81 -0.21 -0.46 16
6 N -0.48 -5.47 10.92 -10.81 -0.12 -5.59 16
7 C 0.20 2.08 6.70 -155.41 -1.04 1.04 16
8 C 0.23 2.58 2.86 -69.08 -0.20 2.39 16
9 H 0.10 1.11 6.51 -51.93 -0.34 0.77 16
10 C -0.16 -1.72 9.47 37.16 0.35 -1.37 16
11 N -0.73 -8.46 5.07 -54.93 -0.28 -8.74 16
12 C 0.52 7.59 7.79 -10.98 -0.09 7.50 16
13 O -0.52 -9.80 15.70 5.56 0.09 -9.72 16
14 C -0.09 -1.28 5.83 -29.04 -0.17 -1.45 16
15 C -0.03 -0.59 4.37 -104.65 -0.46 -1.05 16
16 C -0.20 -3.60 9.70 -39.54 -0.38 -3.98 16
17 C -0.08 -1.46 10.04 -39.61 -0.40 -1.86 16
18 C -0.23 -5.28 9.17 -39.39 -0.36 -5.64 16
19 C 0.15 3.91 6.65 -39.11 -0.26 3.65 16
20 O -0.18 -5.30 9.76 0.06 0.00 -5.30 16
21 C -0.39 -11.23 9.49 30.89 0.29 -10.94 16
22 H 0.09 2.39 5.20 -52.48 -0.27 2.12 16
23 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16
24 N -0.86 -25.93 13.67 55.48 0.76 -25.17 16
25 Si 0.94 21.00 29.55 -169.99 -5.02 15.98 16
26 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16
27 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16
28 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16
29 C -0.17 -3.85 9.65 -39.39 -0.38 -4.23 16
30 H 0.07 0.54 8.01 -51.93 -0.42 0.13 16
31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16
32 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16
33 H 0.09 0.51 7.59 -51.93 -0.39 0.11 16
34 H 0.10 0.32 8.14 -51.92 -0.42 -0.10 16
35 H 0.17 0.73 8.06 -52.49 -0.42 0.30 16
36 H 0.17 1.14 8.06 -52.48 -0.42 0.71 16
37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
39 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16
40 H 0.41 4.19 8.33 -40.82 -0.34 3.85 16
41 H 0.10 1.22 8.08 -51.93 -0.42 0.80 16
42 H 0.10 1.07 8.08 -51.93 -0.42 0.65 16
43 H 0.10 1.57 8.06 -52.48 -0.42 1.15 16
44 H 0.11 1.74 8.06 -52.48 -0.42 1.31 16
45 H 0.13 2.84 5.64 -52.49 -0.30 2.54 16
46 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16
47 H 0.11 2.46 8.06 -52.49 -0.42 2.04 16
LS Contribution 400.84 15.07 6.04 6.04
Total: -1.00 -36.04 400.84 -8.76 -44.80
By element:
Atomic # 1 Polarization: 14.52 SS G_CDS: -6.68 Total: 7.83 kcal
Atomic # 6 Polarization: -12.89 SS G_CDS: -3.23 Total: -16.13 kcal
Atomic # 7 Polarization: -43.56 SS G_CDS: 0.05 Total: -43.52 kcal
Atomic # 8 Polarization: -15.11 SS G_CDS: 0.09 Total: -15.02 kcal
Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal
Total LS contribution 6.04 Total: 6.04 kcal
Total: -36.04 -8.76 -44.80 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000857280731.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 65.289 kcal
(2) G-P(sol) polarization free energy of solvation -36.043 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.247 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.805 kcal
(6) G-S(sol) free energy of system = (1) + (5) 20.484 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds