Wall clock time and date at job start Sat Apr 11 2020 06:54:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 N 1.46497 * 109.46892 * 2 1
4 4 C 1.36881 * 126.39741 * 265.02250 * 3 2 1
5 5 C 1.34669 * 106.81689 * 180.02562 * 4 3 2
6 6 N 1.34124 * 108.02185 * 0.02562 * 5 4 3
7 7 C 1.30503 * 109.25475 * 359.72312 * 6 5 4
8 8 C 1.50701 * 125.65058 * 180.29002 * 7 6 5
9 9 H 1.09000 * 109.46984 * 165.17612 * 8 7 6
10 10 C 1.53003 * 109.47222 * 285.17951 * 8 7 6
11 11 N 1.46498 * 109.47044 * 45.18160 * 8 7 6
12 12 C 1.34779 * 120.00417 * 154.99958 * 11 8 7
13 13 O 1.21279 * 119.99518 * 359.97438 * 12 11 8
14 14 C 1.50701 * 120.00285 * 179.97438 * 12 11 8
15 15 C 1.50697 * 109.47162 * 179.97438 * 14 12 11
16 16 C 1.38319 * 119.96902 * 269.72845 * 15 14 12
17 17 C 1.38274 * 120.13867 * 179.76872 * 16 15 14
18 18 C 1.38124 * 120.07236 * 0.49940 * 17 16 15
19 19 C 1.38862 * 119.92559 * 359.75626 * 18 17 16
20 20 O 1.35747 * 120.06535 * 179.97438 * 19 18 17
21 21 C 1.34830 * 117.00367 * 354.48345 * 20 19 18
22 22 H 1.08004 * 120.00015 * 5.05519 * 21 20 19
23 23 C 1.38651 * 120.00147 * 185.06337 * 21 20 19
24 24 N 1.31559 * 120.00056 * 0.02562 * 23 21 20
25 25 Si 1.86802 * 120.00132 * 179.97438 * 23 21 20
26 26 H 1.48504 * 109.47109 * 59.99686 * 25 23 21
27 27 H 1.48496 * 109.47387 * 179.97438 * 25 23 21
28 28 H 1.48500 * 109.46989 * 299.99958 * 25 23 21
29 29 C 1.38080 * 119.96297 * 89.99635 * 15 14 12
30 30 H 1.08995 * 109.47527 * 299.99814 * 1 2 3
31 31 H 1.09006 * 109.47258 * 60.00098 * 1 2 3
32 32 H 1.09001 * 109.47184 * 179.97438 * 1 2 3
33 33 H 1.08996 * 109.46806 * 120.00190 * 2 1 3
34 34 H 1.09008 * 109.46917 * 240.00188 * 2 1 3
35 35 H 1.07997 * 126.59210 * 0.03936 * 4 3 2
36 36 H 1.08007 * 125.98947 * 179.97438 * 5 4 3
37 37 H 1.08999 * 109.46902 * 299.99718 * 10 8 7
38 38 H 1.08996 * 109.46598 * 60.00268 * 10 8 7
39 39 H 1.09003 * 109.46654 * 179.97438 * 10 8 7
40 40 H 0.97005 * 119.99740 * 334.99233 * 11 8 7
41 41 H 1.08995 * 109.47022 * 300.00129 * 14 12 11
42 42 H 1.09003 * 109.46969 * 59.99543 * 14 12 11
43 43 H 1.08007 * 119.92884 * 359.97438 * 16 15 14
44 44 H 1.08003 * 119.96353 * 180.25247 * 17 16 15
45 45 H 1.07998 * 120.03779 * 179.72113 * 18 17 16
46 46 H 0.97004 * 119.99889 * 180.02562 * 24 23 21
47 47 H 1.08000 * 120.03487 * 359.96234 * 29 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.3791 2.1151 -1.0976
5 6 2.7656 3.3243 -0.6480
6 7 2.6446 3.3283 0.6878
7 6 2.1922 2.1696 1.0825
8 6 1.9132 1.7755 2.5101
9 1 1.3075 0.8695 2.5251
10 6 3.2353 1.5174 3.2356
11 7 1.1901 2.8575 3.1829
12 6 0.4054 2.5855 4.2444
13 8 0.2976 1.4449 4.6423
14 6 -0.3380 3.6986 4.9368
15 6 -1.1368 3.1325 6.0825
16 6 -2.4379 2.7111 5.8759
17 6 -3.1724 2.1867 6.9236
18 6 -2.6120 2.0917 8.1824
19 6 -1.3078 2.5189 8.3942
20 8 -0.7544 2.4273 9.6304
21 6 -1.5591 2.0202 10.6327
22 1 -2.5702 1.7060 10.4197
23 6 -1.0886 2.0050 11.9368
24 7 0.1429 2.3884 12.1964
25 14 -2.2037 1.4416 13.3256
26 1 -2.6290 0.0399 13.0813
27 1 -1.4679 1.5179 14.6132
28 1 -3.4005 2.3186 13.3862
29 6 -0.5708 3.0402 7.3386
30 1 -0.3634 0.5138 0.8899
31 1 -0.3634 0.5138 -0.8900
32 1 -0.3633 -1.0277 -0.0005
33 1 1.8932 -0.5139 0.8900
34 1 1.8933 -0.5138 -0.8901
35 1 2.3577 1.7876 -2.1265
36 1 3.1130 4.1463 -1.2563
37 1 3.7732 0.7123 2.7350
38 1 3.8409 2.4235 3.2206
39 1 3.0334 1.2328 4.2683
40 1 1.2761 3.7697 2.8644
41 1 0.3750 4.4302 5.3169
42 1 -1.0112 4.1815 4.2285
43 1 -2.8800 2.7887 4.8935
44 1 -4.1868 1.8547 6.7582
45 1 -3.1877 1.6863 9.0013
46 1 0.4721 2.3774 13.1088
47 1 0.4439 3.3729 7.5001
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000857280731.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:54:19
Heat of formation + Delta-G solvation = -2.898271 kcal
Electronic energy + Delta-G solvation = -28917.961483 eV
Core-core repulsion = 24873.611981 eV
Total energy + Delta-G solvation = -4044.349501 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.168 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-43.18036 -41.14215 -40.40171 -38.25438 -36.56539 -35.95099 -34.33464 -33.63640
-32.16211 -31.08007 -30.82864 -29.53755 -28.38656 -27.22559 -25.20366 -24.36629
-23.26877 -22.88134 -22.30536 -21.20772 -20.72135 -19.48788 -18.84401 -18.45869
-17.64768 -17.09634 -16.82255 -16.61434 -16.34344 -16.12319 -15.89074 -15.78531
-15.48968 -14.98049 -14.92876 -14.70649 -14.58528 -14.44775 -14.30826 -13.98789
-13.96744 -13.58639 -13.47589 -13.19382 -12.97899 -12.94180 -12.80848 -12.45438
-12.43250 -12.38285 -12.26392 -12.20875 -12.12067 -11.19498 -11.02881 -10.96892
-10.77955 -10.62732 -10.25027 -9.63155 -9.37360 -8.96353 -8.45557 -6.14190
0.52567 0.77331 0.98857 1.34425 1.45891 1.51270 1.63148 1.70810
2.07311 2.18768 2.35881 2.86541 3.17330 3.20193 3.45607 3.73407
3.75661 3.82215 4.00943 4.01688 4.11628 4.14929 4.20417 4.30905
4.33323 4.44337 4.49524 4.54387 4.59957 4.64595 4.67379 4.75463
4.76242 4.76833 4.83721 5.08329 5.10398 5.14021 5.14606 5.31628
5.33414 5.40216 5.66555 5.74358 5.76950 5.83598 6.04084 6.14826
6.24591 6.52392 6.98727 7.07799 7.24029 7.80801 8.77804
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.021131 B = 0.002035 C = 0.001988
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1324.774418 B =13753.739269 C =14078.979198
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C 0.089 3.911
3 N -0.447 5.447
4 C -0.038 4.038
5 C -0.053 4.053
6 N -0.507 5.507
7 C 0.179 3.821
8 C 0.236 3.764
9 H 0.092 0.908
10 C -0.152 4.152
11 N -0.709 5.709
12 C 0.521 3.479
13 O -0.569 6.569
14 C -0.091 4.091
15 C -0.024 4.024
16 C -0.180 4.180
17 C -0.073 4.073
18 C -0.246 4.246
19 C 0.112 3.888
20 O -0.234 6.234
21 C -0.414 4.414
22 H 0.101 0.899
23 C -0.025 4.025
24 N -0.922 5.922
25 Si 1.020 2.980
26 H -0.258 1.258
27 H -0.271 1.271
28 H -0.256 1.256
29 C -0.192 4.192
30 H 0.040 0.960
31 H 0.066 0.934
32 H 0.095 0.905
33 H 0.094 0.906
34 H 0.126 0.874
35 H 0.210 0.790
36 H 0.187 0.813
37 H 0.077 0.923
38 H 0.065 0.935
39 H 0.053 0.947
40 H 0.417 0.583
41 H 0.120 0.880
42 H 0.141 0.859
43 H 0.146 0.854
44 H 0.146 0.854
45 H 0.118 0.882
46 H 0.272 0.728
47 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.951 -1.702 -30.796 30.857
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.224 4.224
2 C -0.032 4.032
3 N -0.130 5.130
4 C -0.172 4.172
5 C -0.201 4.201
6 N -0.226 5.226
7 C -0.083 4.083
8 C 0.129 3.871
9 H 0.110 0.890
10 C -0.211 4.211
11 N -0.363 5.363
12 C 0.309 3.691
13 O -0.448 6.448
14 C -0.131 4.131
15 C -0.025 4.025
16 C -0.198 4.198
17 C -0.091 4.091
18 C -0.265 4.265
19 C 0.062 3.938
20 O -0.141 6.141
21 C -0.490 4.490
22 H 0.118 0.882
23 C -0.222 4.222
24 N -0.561 5.561
25 Si 0.839 3.161
26 H -0.183 1.183
27 H -0.195 1.195
28 H -0.180 1.180
29 C -0.211 4.211
30 H 0.059 0.941
31 H 0.085 0.915
32 H 0.113 0.887
33 H 0.112 0.888
34 H 0.144 0.856
35 H 0.227 0.773
36 H 0.204 0.796
37 H 0.096 0.904
38 H 0.084 0.916
39 H 0.072 0.928
40 H 0.254 0.746
41 H 0.138 0.862
42 H 0.159 0.841
43 H 0.164 0.836
44 H 0.163 0.837
45 H 0.136 0.864
46 H 0.081 0.919
47 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges 1.377 -1.957 -29.768 29.864
hybrid contribution -0.162 -0.476 0.425 0.658
sum 1.215 -2.433 -29.343 29.468
Atomic orbital electron populations
1.22127 0.93757 1.04259 1.02210 1.22200 0.95939 0.78614 1.06413
1.45641 1.47556 1.13487 1.06275 1.23322 1.06873 0.93258 0.93752
1.22756 1.07788 0.98959 0.90621 1.70080 1.18647 1.20180 1.13733
1.22865 1.05899 0.88758 0.90802 1.18867 0.94024 0.90929 0.83241
0.89042 1.22084 0.95892 1.02854 1.00260 1.45868 1.47244 1.11851
1.31370 1.20867 0.78450 0.90227 0.79580 1.90743 1.64768 1.24184
1.65056 1.20683 1.00009 0.96479 0.95904 1.19135 0.94385 0.97000
0.91936 1.20951 0.94351 1.04891 0.99631 1.21122 1.00135 0.96550
0.91263 1.21296 0.95929 1.09730 0.99576 1.19870 0.93113 0.94369
0.86445 1.83937 1.38922 1.77317 1.13942 1.21788 0.96915 1.44813
0.85511 0.88211 1.26625 0.98575 0.96872 1.00157 1.70192 1.17448
1.46771 1.21668 0.84636 0.77056 0.79273 0.75147 1.18273 1.19537
1.17999 1.20209 1.00041 1.08452 0.92399 0.94116 0.91463 0.88658
0.88764 0.85636 0.77286 0.79565 0.90408 0.91577 0.92822 0.74585
0.86175 0.84145 0.83618 0.83656 0.86399 0.91875 0.87646
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.58 10.24 71.98 0.74 -0.84 16
2 C 0.09 0.77 6.32 86.38 0.55 1.32 16
3 N -0.45 -6.33 2.75 -514.29 -1.41 -7.74 16
4 C -0.04 -0.45 11.58 83.09 0.96 0.51 16
5 C -0.05 -0.86 11.87 83.52 0.99 0.13 16
6 N -0.51 -10.81 10.92 -188.13 -2.06 -12.86 16
7 C 0.18 3.50 6.70 138.13 0.93 4.42 16
8 C 0.24 5.09 2.86 44.25 0.13 5.21 16
9 H 0.09 2.08 6.51 -2.39 -0.02 2.07 16
10 C -0.15 -3.33 9.47 71.98 0.68 -2.65 16
11 N -0.71 -15.75 5.07 -446.09 -2.26 -18.02 16
12 C 0.52 14.65 7.79 87.66 0.68 15.34 16
13 O -0.57 -21.43 15.70 -3.03 -0.05 -21.48 16
14 C -0.09 -2.29 5.83 29.10 0.17 -2.12 16
15 C -0.02 -0.86 4.37 -19.88 -0.09 -0.94 16
16 C -0.18 -5.99 9.70 22.30 0.22 -5.77 16
17 C -0.07 -2.67 10.04 22.25 0.22 -2.45 16
18 C -0.25 -11.44 9.17 22.39 0.21 -11.24 16
19 C 0.11 5.97 6.65 22.58 0.15 6.12 16
20 O -0.23 -14.86 9.76 -22.71 -0.22 -15.08 16
21 C -0.41 -25.18 9.49 67.92 0.64 -24.54 16
22 H 0.10 5.57 5.20 -2.91 -0.02 5.56 16
23 C -0.03 -1.49 5.49 84.83 0.47 -1.02 16
24 N -0.92 -58.50 13.67 21.61 0.30 -58.21 16
25 Si 1.02 44.29 29.55 68.60 2.03 46.32 16
26 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16
27 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16
28 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16
29 C -0.19 -8.81 9.65 22.39 0.22 -8.60 16
30 H 0.04 0.61 8.01 -2.39 -0.02 0.59 16
31 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16
32 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16
33 H 0.09 0.84 7.59 -2.39 -0.02 0.83 16
34 H 0.13 0.35 8.14 -2.38 -0.02 0.33 16
35 H 0.21 0.79 8.06 -2.91 -0.02 0.77 16
36 H 0.19 2.10 8.06 -2.91 -0.02 2.07 16
37 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16
38 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16
39 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16
40 H 0.42 7.88 8.33 -92.70 -0.77 7.10 16
41 H 0.12 2.62 8.08 -2.39 -0.02 2.60 16
42 H 0.14 2.38 8.08 -2.39 -0.02 2.36 16
43 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16
44 H 0.15 4.17 8.06 -2.91 -0.02 4.15 16
45 H 0.12 5.52 5.64 -2.91 -0.02 5.50 16
46 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16
47 H 0.11 4.87 8.06 -2.91 -0.02 4.84 16
Total: -1.00 -85.80 400.84 4.40 -81.40
By element:
Atomic # 1 Polarization: 32.56 SS G_CDS: 0.22 Total: 32.78 kcal
Atomic # 6 Polarization: -34.97 SS G_CDS: 7.86 Total: -27.11 kcal
Atomic # 7 Polarization: -91.39 SS G_CDS: -5.44 Total: -96.83 kcal
Atomic # 8 Polarization: -36.29 SS G_CDS: -0.27 Total: -36.56 kcal
Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal
Total: -85.80 4.40 -81.40 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000857280731.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 78.503 kcal
(2) G-P(sol) polarization free energy of solvation -85.802 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.299 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.401 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.402 kcal
(6) G-S(sol) free energy of system = (1) + (5) -2.898 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds