Wall clock time and date at job start Sat Apr 11 2020 06:54:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46507 * 109.46641 * 2 1
4 4 C 1.34783 * 119.99567 * 179.97438 * 3 2 1
5 5 O 1.21278 * 120.00271 * 0.02562 * 4 3 2
6 6 C 1.50699 * 119.99491 * 180.02562 * 4 3 2
7 7 N 1.46906 * 109.46896 * 180.02562 * 6 4 3
8 8 C 1.46898 * 110.99718 * 179.97438 * 7 6 4
9 9 C 1.53006 * 109.46918 * 180.02562 * 8 7 6
10 10 H 1.09002 * 110.66793 * 305.69716 * 9 8 7
11 11 C 1.54883 * 110.75632 * 68.93504 * 9 8 7
12 12 C 1.54265 * 104.19741 * 156.25854 * 11 9 8
13 13 C 1.53877 * 106.59605 * 336.38978 * 12 11 9
14 14 H 1.08997 * 110.03317 * 240.71381 * 13 12 11
15 15 N 1.46510 * 110.03401 * 119.28357 * 13 12 11
16 16 C 1.34773 * 119.99586 * 86.45301 * 15 13 12
17 17 O 1.21276 * 120.00320 * 359.97438 * 16 15 13
18 18 C 1.50702 * 119.99419 * 180.02562 * 16 15 13
19 19 S 1.81007 * 109.46805 * 179.97438 * 18 16 15
20 20 C 1.76201 * 99.99721 * 180.02562 * 19 18 16
21 21 H 1.07995 * 120.00410 * 359.97438 * 20 19 18
22 22 C 1.38806 * 119.99836 * 180.02562 * 20 19 18
23 23 N 1.31629 * 119.99654 * 359.97438 * 22 20 19
24 24 Si 1.86796 * 119.99909 * 180.02562 * 22 20 19
25 25 H 1.48500 * 109.47173 * 359.97438 * 24 22 20
26 26 H 1.48496 * 109.47382 * 119.99741 * 24 22 20
27 27 H 1.48500 * 109.47186 * 239.99655 * 24 22 20
28 28 C 1.54469 * 106.68747 * 0.15960 * 13 12 11
29 29 H 1.09000 * 109.47220 * 299.99599 * 1 2 3
30 30 H 1.08998 * 109.47167 * 60.00384 * 1 2 3
31 31 H 1.09007 * 109.46721 * 179.97438 * 1 2 3
32 32 H 1.09003 * 109.47713 * 240.00380 * 2 1 3
33 33 H 1.09002 * 109.47657 * 119.99632 * 2 1 3
34 34 H 0.96993 * 120.00314 * 0.02562 * 3 2 1
35 35 H 1.08996 * 109.47551 * 60.00116 * 6 4 3
36 36 H 1.09007 * 109.47508 * 299.99952 * 6 4 3
37 37 H 1.00897 * 110.99982 * 303.95261 * 7 6 4
38 38 H 1.09001 * 109.47530 * 60.00292 * 8 7 6
39 39 H 1.08999 * 109.47357 * 299.99428 * 8 7 6
40 40 H 1.09005 * 110.48678 * 274.93480 * 11 9 8
41 41 H 1.08996 * 110.48774 * 37.44349 * 11 9 8
42 42 H 1.09001 * 110.03515 * 95.66954 * 12 11 9
43 43 H 1.08997 * 110.03751 * 217.05840 * 12 11 9
44 44 H 0.96992 * 119.99891 * 266.45142 * 15 13 12
45 45 H 1.08991 * 109.47464 * 300.00081 * 18 16 15
46 46 H 1.09003 * 109.47355 * 60.00447 * 18 16 15
47 47 H 0.97005 * 119.99210 * 180.02562 * 23 22 20
48 48 H 1.09001 * 110.40186 * 264.76026 * 28 13 12
49 49 H 1.08995 * 110.66360 * 142.05277 * 28 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0182 1.3813 0.0000
4 6 3.3434 1.6276 0.0005
5 8 4.1315 0.7059 0.0005
6 6 3.8456 3.0485 0.0011
7 7 5.3146 3.0486 0.0010
8 6 5.8409 4.4200 0.0009
9 6 7.3704 4.3793 0.0002
10 1 7.7396 3.7741 0.8281
11 6 7.9046 3.8445 -1.3517
12 6 9.3345 4.4158 -1.4462
13 6 9.3682 5.6664 -0.5503
14 1 9.6103 6.5463 -1.1463
15 7 10.3584 5.4937 0.5157
16 6 11.6482 5.8168 0.2959
17 8 11.9893 6.2502 -0.7842
18 6 12.6669 5.6386 1.3922
19 16 14.2947 6.1555 0.7929
20 6 15.2623 5.8493 2.2333
21 1 14.7953 5.4560 3.1240
22 6 16.6248 6.1146 2.2234
23 7 17.1939 6.5945 1.1379
24 14 17.6507 5.7893 3.7502
25 1 16.7796 5.2539 4.8271
26 1 18.7109 4.7993 3.4325
27 1 18.2771 7.0566 4.2050
28 6 7.9577 5.8112 0.0625
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3633 -1.0277 -0.0005
32 1 1.8935 -0.5138 -0.8900
33 1 1.8934 -0.5138 0.8900
34 1 1.3879 2.1185 0.0004
35 1 3.4820 3.5621 0.8911
36 1 3.4825 3.5626 -0.8889
37 1 5.6763 2.5221 0.7821
38 1 5.4915 4.9434 0.8910
39 1 5.4914 4.9433 -0.8891
40 1 7.9287 2.7548 -1.3482
41 1 7.2909 4.2089 -2.1754
42 1 10.0549 3.6804 -1.0879
43 1 9.5605 4.6880 -2.4771
44 1 10.0857 5.1468 1.3794
45 1 12.3858 6.2468 2.2518
46 1 12.7046 4.5896 1.6860
47 1 18.1461 6.7796 1.1310
48 1 7.3539 6.4973 -0.5316
49 1 8.0203 6.1532 1.0955
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001278547149.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:54:44
Heat of formation + Delta-G solvation = -90.968857 kcal
Electronic energy + Delta-G solvation = -26303.063657 eV
Core-core repulsion = 22390.339080 eV
Total energy + Delta-G solvation = -3912.724577 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.172 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-40.17811 -39.70781 -38.05652 -36.13208 -35.48433 -33.29807 -32.40255 -31.44326
-30.14604 -29.30205 -27.95394 -26.35881 -25.42823 -23.75496 -22.96501 -21.12876
-20.82178 -20.30576 -19.96038 -17.82742 -17.59961 -16.83633 -16.46241 -16.40036
-16.12799 -15.62048 -15.27230 -15.01918 -14.78301 -14.75873 -14.39521 -14.14932
-14.08324 -13.75672 -13.47950 -13.07874 -13.00680 -12.75181 -12.65007 -12.43151
-12.42627 -12.21821 -12.01486 -11.60919 -11.40307 -11.16863 -11.05247 -10.99452
-10.95978 -10.90168 -10.72392 -10.61550 -10.24024 -9.77338 -9.60014 -9.30645
-9.05199 -8.86293 -8.78372 -8.19469 -6.46579 -6.19348 -3.89293 2.21061
2.57394 3.09745 3.16578 3.23330 3.30520 3.36071 3.73553 3.79977
4.22669 4.22933 4.37668 4.46050 4.48783 4.50405 4.58933 4.72043
4.75626 4.83567 5.06437 5.15953 5.17655 5.22027 5.23776 5.25896
5.32526 5.34533 5.43093 5.44683 5.49281 5.59301 5.68736 5.73340
5.75606 5.89976 5.93516 6.05884 6.10953 6.18436 6.25597 6.33461
6.43919 6.80799 6.87330 7.01531 7.62432 7.77950 7.80682 8.38010
8.70214 9.26204 10.88193
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.024057 B = 0.001436 C = 0.001388
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1163.639636 B =19490.847355 C =20174.194821
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.114 3.886
3 N -0.737 5.737
4 C 0.509 3.491
5 O -0.522 6.522
6 C 0.041 3.959
7 N -0.672 5.672
8 C 0.069 3.931
9 C -0.091 4.091
10 H 0.077 0.923
11 C -0.104 4.104
12 C -0.138 4.138
13 C 0.144 3.856
14 H 0.089 0.911
15 N -0.733 5.733
16 C 0.531 3.469
17 O -0.518 6.518
18 C -0.154 4.154
19 S -0.061 6.061
20 C -0.535 4.535
21 H 0.073 0.927
22 C 0.073 3.927
23 N -0.868 5.868
24 Si 0.918 3.082
25 H -0.272 1.272
26 H -0.280 1.280
27 H -0.280 1.280
28 C -0.124 4.124
29 H 0.061 0.939
30 H 0.062 0.938
31 H 0.074 0.926
32 H 0.067 0.933
33 H 0.066 0.934
34 H 0.400 0.600
35 H 0.058 0.942
36 H 0.102 0.898
37 H 0.351 0.649
38 H 0.031 0.969
39 H 0.075 0.925
40 H 0.070 0.930
41 H 0.065 0.935
42 H 0.070 0.930
43 H 0.069 0.931
44 H 0.396 0.604
45 H 0.088 0.912
46 H 0.089 0.911
47 H 0.267 0.733
48 H 0.079 0.921
49 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -36.767 -7.562 -0.732 37.544
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C -0.010 4.010
3 N -0.391 5.391
4 C 0.295 3.705
5 O -0.397 6.397
6 C -0.091 4.091
7 N -0.304 5.304
8 C -0.060 4.060
9 C -0.110 4.110
10 H 0.095 0.905
11 C -0.142 4.142
12 C -0.177 4.177
13 C 0.039 3.961
14 H 0.107 0.893
15 N -0.387 5.387
16 C 0.318 3.682
17 O -0.392 6.392
18 C -0.305 4.305
19 S 0.166 5.834
20 C -0.683 4.683
21 H 0.091 0.909
22 C -0.136 4.136
23 N -0.503 5.503
24 Si 0.745 3.255
25 H -0.196 1.196
26 H -0.206 1.206
27 H -0.206 1.206
28 C -0.162 4.162
29 H 0.080 0.920
30 H 0.081 0.919
31 H 0.093 0.907
32 H 0.086 0.914
33 H 0.085 0.915
34 H 0.234 0.766
35 H 0.076 0.924
36 H 0.120 0.880
37 H 0.171 0.829
38 H 0.049 0.951
39 H 0.094 0.906
40 H 0.088 0.912
41 H 0.083 0.917
42 H 0.089 0.911
43 H 0.088 0.912
44 H 0.230 0.770
45 H 0.106 0.894
46 H 0.107 0.893
47 H 0.077 0.923
48 H 0.098 0.902
49 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -35.393 -7.533 -3.316 36.338
hybrid contribution -0.424 -0.274 3.555 3.591
sum -35.817 -7.807 0.239 36.659
Atomic orbital electron populations
1.22009 0.94362 1.03387 1.02518 1.21296 0.94238 0.82903 1.02527
1.46065 1.07190 1.09025 1.76821 1.20668 0.82103 0.91680 0.76045
1.90744 1.55092 1.46114 1.47706 1.21795 0.90820 0.93646 1.02874
1.60114 1.04384 1.14363 1.51571 1.22023 0.94795 0.88578 1.00624
1.22139 0.93286 0.96385 0.99218 0.90476 1.22267 0.94991 1.00826
0.96092 1.22651 0.97376 0.97336 1.00323 1.21518 0.87014 0.98749
0.88857 0.89332 1.46169 1.07914 1.68463 1.16132 1.20296 0.82340
0.76495 0.89115 1.90693 1.79305 1.43466 1.25731 1.23539 1.01656
1.05097 1.00161 1.85393 0.93525 1.84400 1.20108 1.22918 0.95581
1.50264 0.99532 0.90916 1.24989 0.96867 0.94615 0.97106 1.70034
1.11688 1.41456 1.27134 0.86123 0.79688 0.78093 0.81627 1.19631
1.20568 1.20588 1.22706 0.95294 0.96705 1.01540 0.91972 0.91917
0.90695 0.91418 0.91518 0.76638 0.92375 0.88030 0.82922 0.95079
0.90611 0.91162 0.91655 0.91144 0.91242 0.77029 0.89350 0.89308
0.92264 0.90244 0.90852
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -0.34 10.03 37.16 0.37 0.03 16
2 C 0.11 0.54 6.39 -4.04 -0.03 0.52 16
3 N -0.74 -3.43 5.56 -60.29 -0.33 -3.76 16
4 C 0.51 3.89 7.87 -10.98 -0.09 3.80 16
5 O -0.52 -6.44 16.20 5.56 0.09 -6.35 16
6 C 0.04 0.22 6.17 -4.97 -0.03 0.19 16
7 N -0.67 -4.95 5.99 -115.05 -0.69 -5.64 16
8 C 0.07 0.43 5.12 -3.82 -0.02 0.41 16
9 C -0.09 -0.70 3.06 -88.63 -0.27 -0.97 16
10 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16
11 C -0.10 -0.97 6.16 -25.08 -0.15 -1.13 16
12 C -0.14 -1.62 6.59 -25.61 -0.17 -1.79 16
13 C 0.14 1.70 3.23 -66.70 -0.22 1.49 16
14 H 0.09 1.23 7.61 -51.93 -0.40 0.83 16
15 N -0.73 -9.90 4.94 -52.61 -0.26 -10.16 16
16 C 0.53 10.06 7.84 -10.99 -0.09 9.97 16
17 O -0.52 -11.91 15.54 5.56 0.09 -11.82 16
18 C -0.15 -3.16 6.16 36.01 0.22 -2.94 16
19 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16
20 C -0.53 -15.42 9.50 30.94 0.29 -15.13 16
21 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16
22 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16
23 N -0.87 -26.44 13.22 55.49 0.73 -25.70 16
24 Si 0.92 21.63 29.55 -169.99 -5.02 16.61 16
25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16
26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16
27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16
28 C -0.12 -1.00 5.89 -24.96 -0.15 -1.15 16
29 H 0.06 0.10 8.14 -51.93 -0.42 -0.32 16
30 H 0.06 0.10 8.14 -51.93 -0.42 -0.32 16
31 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16
32 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16
33 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16
34 H 0.40 0.66 8.47 -40.82 -0.35 0.31 16
35 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16
36 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16
37 H 0.35 2.84 8.43 -39.29 -0.33 2.51 16
38 H 0.03 0.17 8.14 -51.93 -0.42 -0.26 16
39 H 0.08 0.45 8.04 -51.93 -0.42 0.03 16
40 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16
41 H 0.06 0.59 7.97 -51.93 -0.41 0.17 16
42 H 0.07 0.95 7.92 -51.93 -0.41 0.54 16
43 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16
44 H 0.40 4.24 8.55 -40.82 -0.35 3.89 16
45 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16
46 H 0.09 1.70 8.14 -51.91 -0.42 1.27 16
47 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16
48 H 0.08 0.56 8.05 -51.93 -0.42 0.15 16
49 H 0.07 0.55 7.97 -51.93 -0.41 0.14 16
LS Contribution 417.37 15.07 6.29 6.29
Total: -1.00 -37.48 417.37 -10.27 -47.75
By element:
Atomic # 1 Polarization: 9.88 SS G_CDS: -8.54 Total: 1.35 kcal
Atomic # 6 Polarization: -4.27 SS G_CDS: -0.41 Total: -4.68 kcal
Atomic # 7 Polarization: -44.71 SS G_CDS: -0.55 Total: -45.26 kcal
Atomic # 8 Polarization: -18.35 SS G_CDS: 0.18 Total: -18.17 kcal
Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal
Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal
Total LS contribution 6.29 Total: 6.29 kcal
Total: -37.48 -10.27 -47.75 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001278547149.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -43.215 kcal
(2) G-P(sol) polarization free energy of solvation -37.484 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.699 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.269 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.754 kcal
(6) G-S(sol) free energy of system = (1) + (5) -90.969 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds