Wall clock time and date at job start Sat Apr 11 2020 06:54:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46507 * 109.46641 * 2 1
4 4 C 1.34783 * 119.99567 * 179.97438 * 3 2 1
5 5 O 1.21278 * 120.00271 * 0.02562 * 4 3 2
6 6 C 1.50699 * 119.99491 * 180.02562 * 4 3 2
7 7 N 1.46906 * 109.46896 * 180.02562 * 6 4 3
8 8 C 1.46898 * 110.99718 * 179.97438 * 7 6 4
9 9 C 1.53006 * 109.46918 * 180.02562 * 8 7 6
10 10 H 1.09002 * 110.66793 * 305.69716 * 9 8 7
11 11 C 1.54883 * 110.75632 * 68.93504 * 9 8 7
12 12 C 1.54265 * 104.19741 * 156.25854 * 11 9 8
13 13 C 1.53877 * 106.59605 * 336.38978 * 12 11 9
14 14 H 1.08997 * 110.03317 * 240.71381 * 13 12 11
15 15 N 1.46510 * 110.03401 * 119.28357 * 13 12 11
16 16 C 1.34773 * 119.99586 * 86.45301 * 15 13 12
17 17 O 1.21276 * 120.00320 * 359.97438 * 16 15 13
18 18 C 1.50702 * 119.99419 * 180.02562 * 16 15 13
19 19 S 1.81007 * 109.46805 * 179.97438 * 18 16 15
20 20 C 1.76201 * 99.99721 * 180.02562 * 19 18 16
21 21 H 1.07995 * 120.00410 * 359.97438 * 20 19 18
22 22 C 1.38806 * 119.99836 * 180.02562 * 20 19 18
23 23 N 1.31629 * 119.99654 * 359.97438 * 22 20 19
24 24 Si 1.86796 * 119.99909 * 180.02562 * 22 20 19
25 25 H 1.48500 * 109.47173 * 359.97438 * 24 22 20
26 26 H 1.48496 * 109.47382 * 119.99741 * 24 22 20
27 27 H 1.48500 * 109.47186 * 239.99655 * 24 22 20
28 28 C 1.54469 * 106.68747 * 0.15960 * 13 12 11
29 29 H 1.09000 * 109.47220 * 299.99599 * 1 2 3
30 30 H 1.08998 * 109.47167 * 60.00384 * 1 2 3
31 31 H 1.09007 * 109.46721 * 179.97438 * 1 2 3
32 32 H 1.09003 * 109.47713 * 240.00380 * 2 1 3
33 33 H 1.09002 * 109.47657 * 119.99632 * 2 1 3
34 34 H 0.96993 * 120.00314 * 0.02562 * 3 2 1
35 35 H 1.08996 * 109.47551 * 60.00116 * 6 4 3
36 36 H 1.09007 * 109.47508 * 299.99952 * 6 4 3
37 37 H 1.00897 * 110.99982 * 303.95261 * 7 6 4
38 38 H 1.09001 * 109.47530 * 60.00292 * 8 7 6
39 39 H 1.08999 * 109.47357 * 299.99428 * 8 7 6
40 40 H 1.09005 * 110.48678 * 274.93480 * 11 9 8
41 41 H 1.08996 * 110.48774 * 37.44349 * 11 9 8
42 42 H 1.09001 * 110.03515 * 95.66954 * 12 11 9
43 43 H 1.08997 * 110.03751 * 217.05840 * 12 11 9
44 44 H 0.96992 * 119.99891 * 266.45142 * 15 13 12
45 45 H 1.08991 * 109.47464 * 300.00081 * 18 16 15
46 46 H 1.09003 * 109.47355 * 60.00447 * 18 16 15
47 47 H 0.97005 * 119.99210 * 180.02562 * 23 22 20
48 48 H 1.09001 * 110.40186 * 264.76026 * 28 13 12
49 49 H 1.08995 * 110.66360 * 142.05277 * 28 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0182 1.3813 0.0000
4 6 3.3434 1.6276 0.0005
5 8 4.1315 0.7059 0.0005
6 6 3.8456 3.0485 0.0011
7 7 5.3146 3.0486 0.0010
8 6 5.8409 4.4200 0.0009
9 6 7.3704 4.3793 0.0002
10 1 7.7396 3.7741 0.8281
11 6 7.9046 3.8445 -1.3517
12 6 9.3345 4.4158 -1.4462
13 6 9.3682 5.6664 -0.5503
14 1 9.6103 6.5463 -1.1463
15 7 10.3584 5.4937 0.5157
16 6 11.6482 5.8168 0.2959
17 8 11.9893 6.2502 -0.7842
18 6 12.6669 5.6386 1.3922
19 16 14.2947 6.1555 0.7929
20 6 15.2623 5.8493 2.2333
21 1 14.7953 5.4560 3.1240
22 6 16.6248 6.1146 2.2234
23 7 17.1939 6.5945 1.1379
24 14 17.6507 5.7893 3.7502
25 1 16.7796 5.2539 4.8271
26 1 18.7109 4.7993 3.4325
27 1 18.2771 7.0566 4.2050
28 6 7.9577 5.8112 0.0625
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3633 -1.0277 -0.0005
32 1 1.8935 -0.5138 -0.8900
33 1 1.8934 -0.5138 0.8900
34 1 1.3879 2.1185 0.0004
35 1 3.4820 3.5621 0.8911
36 1 3.4825 3.5626 -0.8889
37 1 5.6763 2.5221 0.7821
38 1 5.4915 4.9434 0.8910
39 1 5.4914 4.9433 -0.8891
40 1 7.9287 2.7548 -1.3482
41 1 7.2909 4.2089 -2.1754
42 1 10.0549 3.6804 -1.0879
43 1 9.5605 4.6880 -2.4771
44 1 10.0857 5.1468 1.3794
45 1 12.3858 6.2468 2.2518
46 1 12.7046 4.5896 1.6860
47 1 18.1461 6.7796 1.1310
48 1 7.3539 6.4973 -0.5316
49 1 8.0203 6.1532 1.0955
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001278547149.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:54:43
Heat of formation + Delta-G solvation = -120.429563 kcal
Electronic energy + Delta-G solvation = -26304.341169 eV
Core-core repulsion = 22390.339080 eV
Total energy + Delta-G solvation = -3914.002089 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.172 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-40.99000 -40.67694 -39.11036 -36.72171 -36.10270 -34.59710 -34.45186 -31.95651
-31.16495 -30.33171 -28.83668 -27.68030 -27.00358 -24.28030 -23.36006 -22.17088
-21.61922 -21.13211 -20.91002 -19.82952 -18.18674 -17.83430 -17.39578 -17.26660
-16.88392 -16.86578 -16.48664 -16.18289 -16.01219 -15.65195 -15.57924 -14.92476
-14.86463 -14.79073 -14.55662 -14.34725 -14.11940 -13.71024 -13.30641 -13.17703
-13.16051 -12.98509 -12.93174 -12.81094 -12.69448 -12.58514 -12.35583 -12.19115
-11.89682 -11.77603 -11.69403 -11.64958 -11.41298 -11.15951 -10.89073 -10.85181
-10.27012 -10.09384 -10.04938 -9.29669 -8.66609 -8.34971 -6.12883 1.27639
1.41173 1.47517 1.58734 1.64362 1.66689 2.16675 2.26557 2.34924
2.99337 3.24857 3.32749 3.60484 3.78057 3.83870 3.92312 4.03357
4.16436 4.20400 4.30221 4.37258 4.37873 4.47584 4.50108 4.51270
4.51549 4.56559 4.62271 4.70952 4.76299 4.86324 4.94875 4.98151
5.05007 5.05148 5.17558 5.24277 5.25920 5.39305 5.41935 5.48987
5.54267 5.65918 6.01104 6.19939 6.36624 6.56167 6.62311 7.06491
7.29861 7.31040 8.74664
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.024057 B = 0.001436 C = 0.001388
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1163.639636 B =19490.847355 C =20174.194821
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.111 3.889
3 N -0.722 5.722
4 C 0.503 3.497
5 O -0.579 6.579
6 C 0.046 3.954
7 N -0.692 5.692
8 C 0.076 3.924
9 C -0.084 4.084
10 H 0.076 0.924
11 C -0.095 4.095
12 C -0.138 4.138
13 C 0.138 3.862
14 H 0.067 0.933
15 N -0.706 5.706
16 C 0.533 3.467
17 O -0.566 6.566
18 C -0.130 4.130
19 S -0.152 6.152
20 C -0.546 4.546
21 H 0.082 0.918
22 C 0.014 3.986
23 N -0.912 5.912
24 Si 0.999 3.001
25 H -0.257 1.257
26 H -0.274 1.274
27 H -0.273 1.273
28 C -0.110 4.110
29 H 0.071 0.929
30 H 0.071 0.929
31 H 0.079 0.921
32 H 0.050 0.950
33 H 0.052 0.948
34 H 0.417 0.583
35 H 0.085 0.915
36 H 0.120 0.880
37 H 0.345 0.655
38 H 0.050 0.950
39 H 0.084 0.916
40 H 0.058 0.942
41 H 0.072 0.928
42 H 0.049 0.951
43 H 0.056 0.944
44 H 0.414 0.586
45 H 0.110 0.890
46 H 0.106 0.894
47 H 0.271 0.729
48 H 0.098 0.902
49 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -39.697 -7.296 1.471 40.389
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C -0.013 4.013
3 N -0.376 5.376
4 C 0.290 3.710
5 O -0.458 6.458
6 C -0.086 4.086
7 N -0.324 5.324
8 C -0.053 4.053
9 C -0.103 4.103
10 H 0.094 0.906
11 C -0.133 4.133
12 C -0.176 4.176
13 C 0.034 3.966
14 H 0.086 0.914
15 N -0.360 5.360
16 C 0.318 3.682
17 O -0.444 6.444
18 C -0.281 4.281
19 S 0.075 5.925
20 C -0.694 4.694
21 H 0.100 0.900
22 C -0.191 4.191
23 N -0.548 5.548
24 Si 0.821 3.179
25 H -0.180 1.180
26 H -0.200 1.200
27 H -0.198 1.198
28 C -0.148 4.148
29 H 0.090 0.910
30 H 0.090 0.910
31 H 0.098 0.902
32 H 0.069 0.931
33 H 0.071 0.929
34 H 0.254 0.746
35 H 0.103 0.897
36 H 0.138 0.862
37 H 0.163 0.837
38 H 0.068 0.932
39 H 0.102 0.898
40 H 0.077 0.923
41 H 0.091 0.909
42 H 0.068 0.932
43 H 0.075 0.925
44 H 0.251 0.749
45 H 0.128 0.872
46 H 0.125 0.875
47 H 0.080 0.920
48 H 0.116 0.884
49 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges -38.433 -7.259 -1.089 39.127
hybrid contribution 0.341 -0.401 2.811 2.860
sum -38.091 -7.660 1.721 38.892
Atomic orbital electron populations
1.21948 0.91903 1.04046 1.03398 1.21314 0.96169 0.82792 1.01057
1.45998 1.06794 1.09654 1.75198 1.21220 0.82464 0.92256 0.75015
1.90720 1.56593 1.47873 1.50598 1.21853 0.89689 0.92112 1.04903
1.60096 1.05785 1.14932 1.51634 1.21957 0.93201 0.88263 1.01863
1.22077 0.94694 0.95731 0.97770 0.90573 1.22179 0.93354 0.99969
0.97788 1.22604 0.98661 0.96899 0.99480 1.21710 0.88614 0.97801
0.88502 0.91440 1.45947 1.06227 1.66384 1.17415 1.20068 0.83710
0.76473 0.87906 1.90682 1.80331 1.46104 1.27331 1.23386 0.97575
1.06166 1.01010 1.85577 0.99146 1.85432 1.22351 1.23244 0.96217
1.50368 0.99574 0.89968 1.26127 0.98247 0.93971 1.00742 1.70196
1.12214 1.42644 1.29779 0.84902 0.77666 0.78186 0.77169 1.18035
1.19964 1.19822 1.22652 0.92349 0.97418 1.02381 0.90961 0.91047
0.90222 0.93120 0.92928 0.74600 0.89691 0.86198 0.83692 0.93235
0.89806 0.92335 0.90899 0.93218 0.92548 0.74898 0.87172 0.87546
0.91988 0.88401 0.89298
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -0.38 10.03 71.98 0.72 0.34 16
2 C 0.11 1.00 6.39 86.38 0.55 1.56 16
3 N -0.72 -5.67 5.56 -463.03 -2.57 -8.25 16
4 C 0.50 7.16 7.87 87.66 0.69 7.85 16
5 O -0.58 -14.54 16.20 -3.02 -0.05 -14.59 16
6 C 0.05 0.36 6.17 85.56 0.53 0.89 16
7 N -0.69 -8.72 5.99 -517.91 -3.10 -11.83 16
8 C 0.08 0.68 5.12 86.31 0.44 1.12 16
9 C -0.08 -1.06 3.06 -9.50 -0.03 -1.09 16
10 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16
11 C -0.10 -1.68 6.16 31.67 0.19 -1.49 16
12 C -0.14 -3.25 6.59 31.32 0.21 -3.05 16
13 C 0.14 3.14 3.23 45.78 0.15 3.29 16
14 H 0.07 1.87 7.61 -2.39 -0.02 1.85 16
15 N -0.71 -18.17 4.94 -438.76 -2.17 -20.34 16
16 C 0.53 20.15 7.84 87.66 0.69 20.84 16
17 O -0.57 -26.91 15.54 -3.02 -0.05 -26.95 16
18 C -0.13 -5.28 6.16 71.24 0.44 -4.84 16
19 S -0.15 -8.62 20.57 -56.49 -1.16 -9.78 16
20 C -0.55 -31.67 9.50 67.96 0.65 -31.02 16
21 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16
22 C 0.01 0.80 5.49 84.86 0.47 1.26 16
23 N -0.91 -56.71 13.22 21.65 0.29 -56.43 16
24 Si 1.00 44.13 29.55 68.60 2.03 46.16 16
25 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16
26 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16
27 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16
28 C -0.11 -1.44 5.89 31.74 0.19 -1.25 16
29 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16
30 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16
31 H 0.08 0.15 8.14 -2.38 -0.02 0.13 16
32 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16
33 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16
34 H 0.42 0.30 8.47 -92.71 -0.79 -0.49 16
35 H 0.09 0.24 8.14 -2.39 -0.02 0.23 16
36 H 0.12 0.51 8.14 -2.38 -0.02 0.49 16
37 H 0.34 5.11 8.43 -89.70 -0.76 4.35 16
38 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16
39 H 0.08 0.66 8.04 -2.39 -0.02 0.64 16
40 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16
41 H 0.07 1.19 7.97 -2.39 -0.02 1.17 16
42 H 0.05 1.37 7.92 -2.39 -0.02 1.35 16
43 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16
44 H 0.41 7.79 8.55 -92.71 -0.79 7.00 16
45 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16
46 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16
47 H 0.27 15.59 8.31 -92.70 -0.77 14.81 16
48 H 0.10 1.02 8.05 -2.39 -0.02 1.00 16
49 H 0.09 0.97 7.97 -2.39 -0.02 0.95 16
Total: -1.00 -86.21 417.37 -2.29 -88.50
By element:
Atomic # 1 Polarization: 20.47 SS G_CDS: -1.37 Total: 19.10 kcal
Atomic # 6 Polarization: -11.46 SS G_CDS: 5.88 Total: -5.58 kcal
Atomic # 7 Polarization: -89.28 SS G_CDS: -7.56 Total: -96.84 kcal
Atomic # 8 Polarization: -41.45 SS G_CDS: -0.10 Total: -41.55 kcal
Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal
Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.78 kcal
Total: -86.21 -2.29 -88.50 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001278547149.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -31.932 kcal
(2) G-P(sol) polarization free energy of solvation -86.211 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.144 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.286 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.497 kcal
(6) G-S(sol) free energy of system = (1) + (5) -120.430 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds