Wall clock time and date at job start Sat Apr 11 2020 06:55:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 N 1.46495 * 109.47041 * 2 1
4 4 C 1.46501 * 120.00095 * 270.00074 * 3 2 1
5 5 C 1.34781 * 120.00151 * 89.99708 * 3 2 1
6 6 O 1.21276 * 119.99977 * 0.02562 * 5 3 2
7 7 C 1.50697 * 119.99942 * 180.02562 * 5 3 2
8 8 N 1.46897 * 109.47223 * 180.02562 * 7 5 3
9 9 C 1.46900 * 111.00456 * 180.02562 * 8 7 5
10 10 H 1.08997 * 110.77595 * 36.78075 * 9 8 7
11 11 C 1.55157 * 110.71673 * 273.54561 * 9 8 7
12 12 C 1.54918 * 101.58155 * 206.12947 * 11 9 8
13 13 N 1.47432 * 104.82768 * 37.01006 * 12 11 9
14 14 C 1.34775 * 125.64290 * 155.82338 * 13 12 11
15 15 O 1.21287 * 119.99249 * 180.02562 * 14 13 12
16 16 C 1.50695 * 120.00377 * 0.05601 * 14 13 12
17 17 S 1.80998 * 109.47235 * 179.97438 * 16 14 13
18 18 C 1.76195 * 100.00362 * 180.02562 * 17 16 14
19 19 H 1.08006 * 119.99452 * 359.97438 * 18 17 16
20 20 C 1.38797 * 120.00432 * 180.02562 * 18 17 16
21 21 N 1.31629 * 119.99740 * 359.97438 * 20 18 17
22 22 Si 1.86804 * 120.00284 * 179.97438 * 20 18 17
23 23 H 1.48505 * 109.46848 * 89.99655 * 22 20 18
24 24 H 1.48495 * 109.47044 * 209.99774 * 22 20 18
25 25 H 1.48504 * 109.46854 * 329.99998 * 22 20 18
26 26 C 1.47019 * 108.70400 * 335.87349 * 13 12 11
27 27 H 1.08998 * 110.01028 * 241.57044 * 26 13 12
28 28 C 1.52995 * 109.88512 * 120.47687 * 26 13 12
29 29 H 1.09008 * 109.46998 * 180.02562 * 1 2 3
30 30 H 1.08999 * 109.47035 * 300.00034 * 1 2 3
31 31 H 1.08994 * 109.46988 * 60.00304 * 1 2 3
32 32 H 1.08999 * 109.47035 * 239.99966 * 2 1 3
33 33 H 1.09003 * 109.46837 * 119.99679 * 2 1 3
34 34 H 1.09002 * 109.46994 * 270.00043 * 4 3 2
35 35 H 1.08997 * 109.46981 * 29.99449 * 4 3 2
36 36 H 1.09000 * 109.47588 * 150.00078 * 4 3 2
37 37 H 1.08994 * 109.47196 * 59.99998 * 7 5 3
38 38 H 1.09010 * 109.47331 * 300.00107 * 7 5 3
39 39 H 1.00901 * 111.00372 * 303.95628 * 8 7 5
40 40 H 1.09001 * 111.00846 * 324.20655 * 11 9 8
41 41 H 1.09000 * 111.00346 * 88.06187 * 11 9 8
42 42 H 1.08998 * 110.36791 * 155.84693 * 12 11 9
43 43 H 1.08991 * 110.36593 * 278.17392 * 12 11 9
44 44 H 1.09002 * 109.46939 * 300.00090 * 16 14 13
45 45 H 1.08999 * 109.47228 * 59.99825 * 16 14 13
46 46 H 0.97001 * 119.99602 * 180.02562 * 21 20 18
47 47 H 1.09005 * 109.47067 * 302.18972 * 28 26 13
48 48 H 1.09000 * 109.47444 * 62.18713 * 28 26 13
49 49 H 1.08999 * 109.47654 * 182.19276 * 28 26 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.2624 2.0718 -1.2687
5 6 2.2429 2.0166 1.1672
6 8 2.0412 1.4448 2.2175
7 6 2.7446 3.4376 1.1672
8 7 2.9085 3.8991 2.5521
9 6 3.3969 5.2840 2.5913
10 1 2.9566 5.8721 1.7862
11 6 4.9461 5.3220 2.5151
12 6 5.2600 6.6596 3.2309
13 7 4.2707 6.7455 4.3207
14 6 4.4142 7.4550 5.4575
15 8 3.5315 7.4527 6.2892
16 6 5.6712 8.2517 5.6950
17 16 5.5621 9.0877 7.2967
18 6 7.1153 9.9192 7.3143
19 1 7.7942 9.8129 6.4810
20 6 7.4670 10.7101 8.3994
21 7 6.6398 10.8392 9.4151
22 14 9.1141 11.5911 8.4183
23 1 8.9637 12.9349 7.8042
24 1 9.5813 11.7370 9.8203
25 1 10.1065 10.8019 7.6453
26 6 3.1023 5.9282 3.9624
27 1 2.2145 6.5568 3.8934
28 6 2.8875 4.8381 5.0141
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3633 0.5138 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 1.8933 -0.5138 -0.8900
33 1 1.8933 -0.5138 0.8901
34 1 3.2919 1.9005 -1.5834
35 1 1.5817 1.6876 -2.0284
36 1 2.0955 3.1410 -1.1384
37 1 2.0264 4.0765 0.6535
38 1 3.7048 3.4839 0.6531
39 1 2.0470 3.8051 3.0690
40 1 5.3845 4.4800 3.0508
41 1 5.2859 5.3439 1.4797
42 1 6.2713 6.6443 3.6370
43 1 5.1393 7.4957 2.5422
44 1 6.5315 7.5824 5.6918
45 1 5.7855 8.9941 4.9051
46 1 6.8854 11.3921 10.1733
47 1 3.7854 4.2249 5.0905
48 1 2.6801 5.3003 5.9793
49 1 2.0441 4.2125 4.7221
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001725555769.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:55:23
Heat of formation + Delta-G solvation = -53.527204 kcal
Electronic energy + Delta-G solvation = -27618.788585 eV
Core-core repulsion = 23707.687599 eV
Total energy + Delta-G solvation = -3911.100985 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.172 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-40.51127 -39.95690 -37.71798 -36.28679 -34.97403 -32.40815 -32.17497 -31.38227
-30.78985 -28.65223 -27.30097 -26.70173 -25.47246 -25.13339 -23.24371 -22.95728
-20.29979 -19.66172 -18.98542 -17.74835 -17.47914 -16.93845 -16.56555 -16.52605
-16.15662 -15.41494 -15.06365 -14.78793 -14.69016 -14.47414 -14.12294 -14.00474
-13.67451 -13.50899 -13.36671 -13.16360 -13.11023 -12.85893 -12.55732 -12.53071
-12.39180 -12.38067 -12.33655 -11.82520 -11.62196 -11.54241 -11.49627 -11.06601
-11.04345 -10.99534 -10.75079 -10.72879 -10.13529 -9.79153 -9.28444 -9.18118
-9.04523 -8.83047 -8.46096 -8.20136 -6.47327 -6.19396 -3.89725 2.25084
2.42988 2.92057 3.12001 3.23741 3.27146 3.31766 3.60986 3.79362
4.08596 4.21032 4.24698 4.44255 4.50218 4.60432 4.66528 4.72967
4.82999 4.88227 4.93226 4.98718 5.05145 5.10032 5.11024 5.15696
5.23195 5.26063 5.40783 5.44368 5.48485 5.55911 5.58867 5.69023
5.70930 5.77966 5.90913 5.99023 6.03404 6.15895 6.17637 6.43891
6.53743 6.63326 6.87167 6.99573 7.61586 7.73671 7.79529 8.37369
8.62488 9.25793 10.88039
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.034377 B = 0.001770 C = 0.001719
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 814.310774 B =15816.255649 C =16285.369081
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C 0.111 3.889
3 N -0.623 5.623
4 C 0.076 3.924
5 C 0.512 3.488
6 O -0.519 6.519
7 C 0.041 3.959
8 N -0.660 5.660
9 C 0.077 3.923
10 H 0.061 0.939
11 C -0.121 4.121
12 C 0.100 3.900
13 N -0.620 5.620
14 C 0.550 3.450
15 O -0.513 6.513
16 C -0.146 4.146
17 S -0.060 6.060
18 C -0.535 4.535
19 H 0.072 0.928
20 C 0.074 3.926
21 N -0.867 5.867
22 Si 0.918 3.082
23 H -0.277 1.277
24 H -0.282 1.282
25 H -0.272 1.272
26 C 0.139 3.861
27 H 0.072 0.928
28 C -0.155 4.155
29 H 0.066 0.934
30 H 0.059 0.941
31 H 0.054 0.946
32 H 0.076 0.924
33 H 0.084 0.916
34 H 0.059 0.941
35 H 0.072 0.928
36 H 0.072 0.928
37 H 0.060 0.940
38 H 0.102 0.898
39 H 0.356 0.644
40 H 0.088 0.912
41 H 0.078 0.922
42 H 0.081 0.919
43 H 0.067 0.933
44 H 0.089 0.911
45 H 0.088 0.912
46 H 0.268 0.732
47 H 0.064 0.936
48 H 0.071 0.929
49 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.833 -18.813 -27.169 34.206
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C -0.011 4.011
3 N -0.359 5.359
4 C -0.067 4.067
5 C 0.300 3.700
6 O -0.394 6.394
7 C -0.091 4.091
8 N -0.295 5.295
9 C -0.033 4.033
10 H 0.079 0.921
11 C -0.160 4.160
12 C -0.024 4.024
13 N -0.358 5.358
14 C 0.339 3.661
15 O -0.387 6.387
16 C -0.297 4.297
17 S 0.167 5.833
18 C -0.683 4.683
19 H 0.090 0.910
20 C -0.136 4.136
21 N -0.503 5.503
22 Si 0.745 3.255
23 H -0.203 1.203
24 H -0.208 1.208
25 H -0.197 1.197
26 C 0.035 3.965
27 H 0.090 0.910
28 C -0.213 4.213
29 H 0.085 0.915
30 H 0.078 0.922
31 H 0.073 0.927
32 H 0.094 0.906
33 H 0.103 0.897
34 H 0.077 0.923
35 H 0.091 0.909
36 H 0.091 0.909
37 H 0.077 0.923
38 H 0.120 0.880
39 H 0.179 0.821
40 H 0.107 0.893
41 H 0.096 0.904
42 H 0.099 0.901
43 H 0.085 0.915
44 H 0.107 0.893
45 H 0.106 0.894
46 H 0.078 0.922
47 H 0.083 0.917
48 H 0.090 0.910
49 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -9.673 -19.271 -25.012 33.023
hybrid contribution 1.334 1.097 -1.549 2.320
sum -8.340 -18.174 -26.560 33.246
Atomic orbital electron populations
1.22127 0.95843 1.02350 1.02275 1.21419 0.94419 0.82071 1.03239
1.47923 1.67066 1.14591 1.06294 1.21825 1.01590 0.97752 0.85520
1.20629 0.77421 0.88666 0.83317 1.90733 1.50470 1.67389 1.30766
1.21894 1.01962 0.92708 0.92521 1.60416 1.37841 1.20429 1.10858
1.22582 0.96472 0.87901 0.96351 0.92109 1.22858 0.94497 0.97756
1.00845 1.22296 0.93696 0.97225 0.89155 1.48506 1.18894 1.49207
1.19188 1.19993 0.88597 0.78209 0.79341 1.90694 1.42520 1.62412
1.43074 1.23509 0.97166 1.01807 1.07215 1.85398 1.25648 1.58246
1.14053 1.22864 1.03548 1.34123 1.07796 0.90954 1.24987 0.98007
0.95992 0.94580 1.70022 1.35632 1.37481 1.07132 0.86172 0.82176
0.79617 0.77557 1.20292 1.20750 1.19701 1.21456 0.89333 0.92340
0.93418 0.91039 1.22007 1.02208 0.97592 0.99509 0.91503 0.92173
0.92699 0.90606 0.89716 0.92279 0.90919 0.90932 0.92263 0.87954
0.82097 0.89306 0.90384 0.90097 0.91459 0.89321 0.89389 0.92201
0.91704 0.90959 0.92006
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -0.89 10.24 37.16 0.38 -0.51 16
2 C 0.11 0.64 6.13 -4.04 -0.02 0.61 16
3 N -0.62 -3.82 2.87 -181.58 -0.52 -4.34 16
4 C 0.08 0.20 10.24 59.85 0.61 0.81 16
5 C 0.51 4.51 7.71 -10.98 -0.08 4.43 16
6 O -0.52 -6.77 15.78 5.56 0.09 -6.68 16
7 C 0.04 0.27 4.58 -4.98 -0.02 0.25 16
8 N -0.66 -5.95 5.21 -106.06 -0.55 -6.50 16
9 C 0.08 0.69 3.11 -65.88 -0.20 0.48 16
10 H 0.06 0.45 7.90 -51.93 -0.41 0.04 16
11 C -0.12 -1.04 6.71 -24.58 -0.16 -1.20 16
12 C 0.10 1.08 6.69 -2.52 -0.02 1.06 16
13 N -0.62 -9.15 3.08 -163.02 -0.50 -9.66 16
14 C 0.55 10.83 7.65 -10.99 -0.08 10.74 16
15 O -0.51 -12.01 14.77 5.55 0.08 -11.93 16
16 C -0.15 -3.06 5.16 36.00 0.19 -2.87 16
17 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16
18 C -0.54 -15.40 9.50 30.94 0.29 -15.11 16
19 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16
20 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16
21 N -0.87 -26.39 13.22 55.49 0.73 -25.65 16
22 Si 0.92 21.55 29.55 -169.99 -5.02 16.53 16
23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16
24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16
25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16
26 C 0.14 1.74 3.41 -66.96 -0.23 1.52 16
27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16
28 C -0.15 -2.11 8.40 37.15 0.31 -1.80 16
29 H 0.07 0.28 8.14 -51.92 -0.42 -0.14 16
30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
31 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16
32 H 0.08 0.27 8.07 -51.93 -0.42 -0.15 16
33 H 0.08 0.65 7.42 -51.93 -0.39 0.27 16
34 H 0.06 0.11 8.14 -51.93 -0.42 -0.31 16
35 H 0.07 0.11 8.07 -51.93 -0.42 -0.31 16
36 H 0.07 0.12 6.44 -51.93 -0.33 -0.21 16
37 H 0.06 0.28 7.35 -51.93 -0.38 -0.10 16
38 H 0.10 0.53 8.10 -51.92 -0.42 0.11 16
39 H 0.36 3.51 6.14 -39.29 -0.24 3.27 16
40 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16
41 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16
42 H 0.08 0.88 7.47 -51.93 -0.39 0.49 16
43 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16
44 H 0.09 1.73 7.85 -51.92 -0.41 1.32 16
45 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16
46 H 0.27 7.57 8.31 -40.82 -0.34 7.24 16
47 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16
48 H 0.07 1.21 6.76 -51.93 -0.35 0.86 16
49 H 0.06 0.72 6.23 -51.93 -0.32 0.40 16
LS Contribution 406.75 15.07 6.13 6.13
Total: -1.00 -37.03 406.75 -9.17 -46.21
By element:
Atomic # 1 Polarization: 7.59 SS G_CDS: -8.25 Total: -0.67 kcal
Atomic # 6 Polarization: -0.42 SS G_CDS: 0.86 Total: 0.44 kcal
Atomic # 7 Polarization: -45.31 SS G_CDS: -0.84 Total: -46.15 kcal
Atomic # 8 Polarization: -18.78 SS G_CDS: 0.17 Total: -18.61 kcal
Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal
Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal
Total LS contribution 6.13 Total: 6.13 kcal
Total: -37.03 -9.17 -46.21 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001725555769.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -7.321 kcal
(2) G-P(sol) polarization free energy of solvation -37.032 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.352 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.175 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.206 kcal
(6) G-S(sol) free energy of system = (1) + (5) -53.527 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds