Wall clock time and date at job start Sat Apr 11 2020 06:55:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 N 1.46495 * 109.47041 * 2 1
4 4 C 1.46501 * 120.00095 * 270.00074 * 3 2 1
5 5 C 1.34781 * 120.00151 * 89.99708 * 3 2 1
6 6 O 1.21276 * 119.99977 * 0.02562 * 5 3 2
7 7 C 1.50697 * 119.99942 * 180.02562 * 5 3 2
8 8 N 1.46897 * 109.47223 * 180.02562 * 7 5 3
9 9 C 1.46900 * 111.00456 * 180.02562 * 8 7 5
10 10 H 1.08997 * 110.77595 * 36.78075 * 9 8 7
11 11 C 1.55157 * 110.71673 * 273.54561 * 9 8 7
12 12 C 1.54918 * 101.58155 * 206.12947 * 11 9 8
13 13 N 1.47432 * 104.82768 * 37.01006 * 12 11 9
14 14 C 1.34775 * 125.64290 * 155.82338 * 13 12 11
15 15 O 1.21287 * 119.99249 * 180.02562 * 14 13 12
16 16 C 1.50695 * 120.00377 * 0.05601 * 14 13 12
17 17 S 1.80998 * 109.47235 * 179.97438 * 16 14 13
18 18 C 1.76195 * 100.00362 * 180.02562 * 17 16 14
19 19 H 1.08006 * 119.99452 * 359.97438 * 18 17 16
20 20 C 1.38797 * 120.00432 * 180.02562 * 18 17 16
21 21 N 1.31629 * 119.99740 * 359.97438 * 20 18 17
22 22 Si 1.86804 * 120.00284 * 179.97438 * 20 18 17
23 23 H 1.48505 * 109.46848 * 89.99655 * 22 20 18
24 24 H 1.48495 * 109.47044 * 209.99774 * 22 20 18
25 25 H 1.48504 * 109.46854 * 329.99998 * 22 20 18
26 26 C 1.47019 * 108.70400 * 335.87349 * 13 12 11
27 27 H 1.08998 * 110.01028 * 241.57044 * 26 13 12
28 28 C 1.52995 * 109.88512 * 120.47687 * 26 13 12
29 29 H 1.09008 * 109.46998 * 180.02562 * 1 2 3
30 30 H 1.08999 * 109.47035 * 300.00034 * 1 2 3
31 31 H 1.08994 * 109.46988 * 60.00304 * 1 2 3
32 32 H 1.08999 * 109.47035 * 239.99966 * 2 1 3
33 33 H 1.09003 * 109.46837 * 119.99679 * 2 1 3
34 34 H 1.09002 * 109.46994 * 270.00043 * 4 3 2
35 35 H 1.08997 * 109.46981 * 29.99449 * 4 3 2
36 36 H 1.09000 * 109.47588 * 150.00078 * 4 3 2
37 37 H 1.08994 * 109.47196 * 59.99998 * 7 5 3
38 38 H 1.09010 * 109.47331 * 300.00107 * 7 5 3
39 39 H 1.00901 * 111.00372 * 303.95628 * 8 7 5
40 40 H 1.09001 * 111.00846 * 324.20655 * 11 9 8
41 41 H 1.09000 * 111.00346 * 88.06187 * 11 9 8
42 42 H 1.08998 * 110.36791 * 155.84693 * 12 11 9
43 43 H 1.08991 * 110.36593 * 278.17392 * 12 11 9
44 44 H 1.09002 * 109.46939 * 300.00090 * 16 14 13
45 45 H 1.08999 * 109.47228 * 59.99825 * 16 14 13
46 46 H 0.97001 * 119.99602 * 180.02562 * 21 20 18
47 47 H 1.09005 * 109.47067 * 302.18972 * 28 26 13
48 48 H 1.09000 * 109.47444 * 62.18713 * 28 26 13
49 49 H 1.08999 * 109.47654 * 182.19276 * 28 26 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.2624 2.0718 -1.2687
5 6 2.2429 2.0166 1.1672
6 8 2.0412 1.4448 2.2175
7 6 2.7446 3.4376 1.1672
8 7 2.9085 3.8991 2.5521
9 6 3.3969 5.2840 2.5913
10 1 2.9566 5.8721 1.7862
11 6 4.9461 5.3220 2.5151
12 6 5.2600 6.6596 3.2309
13 7 4.2707 6.7455 4.3207
14 6 4.4142 7.4550 5.4575
15 8 3.5315 7.4527 6.2892
16 6 5.6712 8.2517 5.6950
17 16 5.5621 9.0877 7.2967
18 6 7.1153 9.9192 7.3143
19 1 7.7942 9.8129 6.4810
20 6 7.4670 10.7101 8.3994
21 7 6.6398 10.8392 9.4151
22 14 9.1141 11.5911 8.4183
23 1 8.9637 12.9349 7.8042
24 1 9.5813 11.7370 9.8203
25 1 10.1065 10.8019 7.6453
26 6 3.1023 5.9282 3.9624
27 1 2.2145 6.5568 3.8934
28 6 2.8875 4.8381 5.0141
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3633 0.5138 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 1.8933 -0.5138 -0.8900
33 1 1.8933 -0.5138 0.8901
34 1 3.2919 1.9005 -1.5834
35 1 1.5817 1.6876 -2.0284
36 1 2.0955 3.1410 -1.1384
37 1 2.0264 4.0765 0.6535
38 1 3.7048 3.4839 0.6531
39 1 2.0470 3.8051 3.0690
40 1 5.3845 4.4800 3.0508
41 1 5.2859 5.3439 1.4797
42 1 6.2713 6.6443 3.6370
43 1 5.1393 7.4957 2.5422
44 1 6.5315 7.5824 5.6918
45 1 5.7855 8.9941 4.9051
46 1 6.8854 11.3921 10.1733
47 1 3.7854 4.2249 5.0905
48 1 2.6801 5.3003 5.9793
49 1 2.0441 4.2125 4.7221
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001725555769.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:55:22
Heat of formation + Delta-G solvation = -80.242663 kcal
Electronic energy + Delta-G solvation = -27619.947054 eV
Core-core repulsion = 23707.687599 eV
Total energy + Delta-G solvation = -3912.259455 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.172 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-41.41260 -40.81494 -38.95125 -36.86529 -35.86942 -34.58810 -32.98530 -32.19908
-31.78840 -30.00804 -27.83452 -27.63374 -27.28668 -25.98422 -24.03979 -23.73101
-21.24766 -20.39738 -20.08081 -19.55366 -18.20554 -17.94580 -17.54443 -17.14510
-17.01778 -16.88478 -16.62049 -16.08441 -15.85339 -15.62604 -14.99322 -14.80522
-14.58979 -14.53224 -14.34461 -14.10845 -13.99126 -13.72434 -13.44144 -13.42311
-13.27327 -13.13680 -13.10486 -12.98780 -12.88902 -12.84012 -12.68216 -12.57597
-12.40957 -11.95778 -11.86254 -11.73302 -11.63623 -11.14197 -10.89565 -10.75576
-10.27923 -9.71239 -9.65076 -9.41485 -8.68048 -8.34588 -6.13404 1.23587
1.42862 1.44656 1.56119 1.58907 1.66009 1.94848 2.12909 2.27476
2.99504 3.12975 3.21642 3.40215 3.60752 3.68604 3.89296 4.03800
4.15456 4.21587 4.23314 4.29375 4.30867 4.32653 4.41100 4.43162
4.46627 4.52524 4.53695 4.61565 4.66092 4.77400 4.78365 4.83529
4.99156 5.00914 5.01873 5.03804 5.26206 5.27086 5.30871 5.41388
5.48308 5.59909 5.94363 6.19632 6.21829 6.41791 6.45634 7.06312
7.14996 7.23401 8.74772
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.034377 B = 0.001770 C = 0.001719
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 814.310774 B =15816.255649 C =16285.369081
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C 0.107 3.893
3 N -0.619 5.619
4 C 0.069 3.931
5 C 0.503 3.497
6 O -0.576 6.576
7 C 0.047 3.953
8 N -0.677 5.677
9 C 0.094 3.906
10 H 0.091 0.909
11 C -0.110 4.110
12 C 0.089 3.911
13 N -0.612 5.612
14 C 0.546 3.454
15 O -0.564 6.564
16 C -0.119 4.119
17 S -0.152 6.152
18 C -0.546 4.546
19 H 0.083 0.917
20 C 0.013 3.987
21 N -0.912 5.912
22 Si 1.000 3.000
23 H -0.266 1.266
24 H -0.278 1.278
25 H -0.257 1.257
26 C 0.131 3.869
27 H 0.067 0.933
28 C -0.144 4.144
29 H 0.075 0.925
30 H 0.031 0.969
31 H 0.069 0.931
32 H 0.103 0.897
33 H 0.057 0.943
34 H 0.071 0.929
35 H 0.087 0.913
36 H 0.087 0.913
37 H 0.088 0.912
38 H 0.125 0.875
39 H 0.348 0.652
40 H 0.072 0.928
41 H 0.118 0.882
42 H 0.081 0.919
43 H 0.093 0.907
44 H 0.104 0.896
45 H 0.108 0.892
46 H 0.271 0.729
47 H 0.053 0.947
48 H 0.032 0.968
49 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.216 -18.785 -31.774 37.611
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C -0.016 4.016
3 N -0.353 5.353
4 C -0.073 4.073
5 C 0.292 3.708
6 O -0.455 6.455
7 C -0.085 4.085
8 N -0.312 5.312
9 C -0.016 4.016
10 H 0.109 0.891
11 C -0.148 4.148
12 C -0.033 4.033
13 N -0.347 5.347
14 C 0.334 3.666
15 O -0.442 6.442
16 C -0.270 4.270
17 S 0.075 5.925
18 C -0.694 4.694
19 H 0.101 0.899
20 C -0.192 4.192
21 N -0.548 5.548
22 Si 0.822 3.178
23 H -0.191 1.191
24 H -0.203 1.203
25 H -0.181 1.181
26 C 0.028 3.972
27 H 0.085 0.915
28 C -0.203 4.203
29 H 0.094 0.906
30 H 0.050 0.950
31 H 0.088 0.912
32 H 0.121 0.879
33 H 0.075 0.925
34 H 0.090 0.910
35 H 0.106 0.894
36 H 0.106 0.894
37 H 0.105 0.895
38 H 0.143 0.857
39 H 0.170 0.830
40 H 0.091 0.909
41 H 0.136 0.864
42 H 0.100 0.900
43 H 0.111 0.889
44 H 0.122 0.878
45 H 0.126 0.874
46 H 0.080 0.920
47 H 0.073 0.927
48 H 0.052 0.948
49 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -8.043 -19.272 -29.735 36.335
hybrid contribution 0.751 0.950 -0.264 1.240
sum -7.292 -18.322 -29.999 35.900
Atomic orbital electron populations
1.22065 0.95557 1.02798 1.01512 1.21483 0.94656 0.82250 1.03199
1.48063 1.65680 1.14626 1.06968 1.22108 1.02807 0.98412 0.83957
1.21143 0.76917 0.89550 0.83225 1.90712 1.53190 1.68744 1.32861
1.21976 1.03746 0.91404 0.91358 1.60378 1.37743 1.20402 1.12666
1.22500 0.96947 0.87987 0.94181 0.89087 1.22854 0.93889 0.95539
1.02544 1.22705 0.92638 0.99697 0.88294 1.48456 1.20537 1.47350
1.18345 1.19770 0.87633 0.78790 0.80419 1.90677 1.43854 1.64425
1.45255 1.23299 0.98615 1.01982 1.03070 1.85605 1.26879 1.59900
1.20108 1.23199 1.03480 1.34273 1.08446 0.89854 1.26152 1.02444
0.96689 0.93878 1.70193 1.38116 1.38492 1.08019 0.84933 0.76635
0.78401 0.77871 1.19150 1.20331 1.18128 1.21671 0.88459 0.91714
0.95402 0.91473 1.21868 1.02367 0.97837 0.98199 0.90576 0.94950
0.91228 0.87872 0.92463 0.91020 0.89432 0.89397 0.89473 0.85688
0.82989 0.90888 0.86355 0.90049 0.88905 0.87812 0.87382 0.91992
0.92741 0.94845 0.90282
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.57 10.24 71.98 0.74 -0.84 16
2 C 0.11 1.11 6.13 86.38 0.53 1.64 16
3 N -0.62 -6.29 2.87 -846.77 -2.43 -8.72 16
4 C 0.07 0.09 10.24 127.77 1.31 1.40 16
5 C 0.50 8.16 7.71 87.66 0.68 8.84 16
6 O -0.58 -15.39 15.78 -3.02 -0.05 -15.44 16
7 C 0.05 0.45 4.58 85.56 0.39 0.85 16
8 N -0.68 -10.74 5.21 -489.46 -2.55 -13.29 16
9 C 0.09 1.36 3.11 46.10 0.14 1.50 16
10 H 0.09 0.86 7.90 -2.39 -0.02 0.84 16
11 C -0.11 -1.45 6.71 31.99 0.21 -1.23 16
12 C 0.09 1.63 6.69 86.86 0.58 2.21 16
13 N -0.61 -17.46 3.08 -788.06 -2.43 -19.89 16
14 C 0.55 21.85 7.65 87.66 0.67 22.52 16
15 O -0.56 -27.81 14.77 -3.05 -0.05 -27.86 16
16 C -0.12 -4.95 5.16 71.23 0.37 -4.59 16
17 S -0.15 -8.71 20.57 -56.49 -1.16 -9.87 16
18 C -0.55 -31.70 9.50 67.95 0.65 -31.06 16
19 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16
20 C 0.01 0.75 5.49 84.86 0.47 1.22 16
21 N -0.91 -56.84 13.22 21.65 0.29 -56.56 16
22 Si 1.00 43.97 29.55 68.60 2.03 46.00 16
23 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16
24 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16
25 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16
26 C 0.13 3.18 3.41 45.34 0.15 3.34 16
27 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16
28 C -0.14 -4.10 8.40 71.98 0.60 -3.49 16
29 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16
30 H 0.03 0.49 8.14 -2.39 -0.02 0.48 16
31 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16
32 H 0.10 0.49 8.07 -2.39 -0.02 0.47 16
33 H 0.06 0.92 7.42 -2.39 -0.02 0.90 16
34 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16
35 H 0.09 -0.10 8.07 -2.39 -0.02 -0.12 16
36 H 0.09 -0.13 6.44 -2.39 -0.02 -0.14 16
37 H 0.09 0.41 7.35 -2.39 -0.02 0.39 16
38 H 0.13 0.67 8.10 -2.38 -0.02 0.65 16
39 H 0.35 6.56 6.14 -89.69 -0.55 6.01 16
40 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16
41 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16
42 H 0.08 1.52 7.47 -2.39 -0.02 1.51 16
43 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16
44 H 0.10 3.99 7.85 -2.39 -0.02 3.97 16
45 H 0.11 4.05 8.14 -2.40 -0.02 4.03 16
46 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16
47 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16
48 H 0.03 1.19 6.76 -2.39 -0.02 1.18 16
49 H 0.08 1.92 6.23 -2.39 -0.01 1.91 16
Total: -1.00 -87.55 406.75 1.52 -86.02
By element:
Atomic # 1 Polarization: 16.90 SS G_CDS: 0.39 Total: 17.29 kcal
Atomic # 6 Polarization: -5.18 SS G_CDS: 7.49 Total: 2.31 kcal
Atomic # 7 Polarization: -91.33 SS G_CDS: -7.13 Total: -98.46 kcal
Atomic # 8 Polarization: -43.20 SS G_CDS: -0.09 Total: -43.30 kcal
Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal
Atomic # 16 Polarization: -8.71 SS G_CDS: -1.16 Total: -9.87 kcal
Total: -87.55 1.52 -86.02 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001725555769.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 5.781 kcal
(2) G-P(sol) polarization free energy of solvation -87.548 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.767 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.525 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.024 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.243 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds