Wall clock time and date at job start Sat Apr 11 2020 06:55:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17399 * 1
3 3 C 1.43202 * 179.97438 * 2 1
4 4 C 1.39585 * 120.10601 * 25.30988 * 3 2 1
5 5 C 1.37998 * 119.99549 * 179.97438 * 4 3 2
6 6 C 1.38245 * 120.21628 * 359.74477 * 5 4 3
7 7 C 1.38940 * 120.21688 * 0.51027 * 6 5 4
8 8 N 1.39946 * 120.00513 * 179.76280 * 7 6 5
9 9 C 1.34767 * 120.00289 * 214.82689 * 8 7 6
10 10 O 1.21283 * 120.00326 * 355.39138 * 9 8 7
11 11 C 1.50703 * 119.99749 * 175.38234 * 9 8 7
12 12 N 1.46507 * 109.46820 * 180.02562 * 11 9 8
13 13 C 1.46500 * 120.00052 * 270.00016 * 12 11 9
14 14 C 1.34778 * 119.99790 * 90.00846 * 12 11 9
15 15 O 1.21277 * 119.99846 * 359.97438 * 14 12 11
16 16 C 1.50696 * 119.99890 * 180.27500 * 14 12 11
17 17 H 1.09004 * 109.47087 * 319.72252 * 16 14 12
18 18 N 1.46902 * 109.47273 * 199.72254 * 16 14 12
19 19 C 1.53005 * 109.47519 * 79.71770 * 16 14 12
20 20 C 1.52994 * 109.47413 * 185.00187 * 19 16 14
21 21 C 1.50693 * 109.47190 * 180.02562 * 20 19 16
22 22 H 1.07999 * 119.99952 * 0.02562 * 21 20 19
23 23 C 1.37878 * 120.00208 * 179.97438 * 21 20 19
24 24 N 1.31523 * 120.00015 * 359.97438 * 23 21 20
25 25 Si 1.86803 * 120.00224 * 179.97438 * 23 21 20
26 26 H 1.48505 * 109.47027 * 60.00311 * 25 23 21
27 27 H 1.48503 * 109.46849 * 179.97438 * 25 23 21
28 28 H 1.48497 * 109.47091 * 300.00209 * 25 23 21
29 29 C 1.38650 * 119.99716 * 359.49521 * 7 6 5
30 30 H 4.52047 * 14.03198 * 0.02562 * 4 2 1
31 31 H 1.07996 * 120.00626 * 359.95707 * 4 3 2
32 32 H 1.08004 * 119.89375 * 180.02562 * 5 4 3
33 33 H 1.08004 * 119.88910 * 180.25500 * 6 5 4
34 34 H 0.97001 * 119.98940 * 34.82918 * 8 7 6
35 35 H 1.09000 * 109.46977 * 60.00519 * 11 9 8
36 36 H 1.09000 * 109.47320 * 300.00362 * 11 9 8
37 37 H 1.08994 * 109.47010 * 270.00715 * 13 12 11
38 38 H 1.09000 * 109.46849 * 30.00662 * 13 12 11
39 39 H 1.08995 * 109.46862 * 150.00092 * 13 12 11
40 40 H 1.00902 * 110.99330 * 299.99961 * 18 16 14
41 41 H 1.00900 * 110.99590 * 63.95087 * 18 16 14
42 42 H 1.09000 * 109.46687 * 305.00627 * 19 16 14
43 43 H 1.08997 * 109.46465 * 65.00118 * 19 16 14
44 44 H 1.09009 * 109.47086 * 300.00258 * 20 19 16
45 45 H 1.09003 * 109.47264 * 60.00041 * 20 19 16
46 46 H 0.96997 * 120.00085 * 180.02562 * 24 23 21
47 47 H 1.07996 * 120.10482 * 180.22928 * 29 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6060 0.0006 0.0000
4 6 3.3067 -1.0907 -0.5162
5 6 4.6866 -1.0874 -0.5156
6 6 5.3796 -0.0035 -0.0096
7 6 4.6912 1.0852 0.5113
8 7 5.3972 2.1781 1.0269
9 6 4.9131 2.8531 2.0881
10 8 3.8263 2.5673 2.5443
11 6 5.7223 3.9631 2.7080
12 7 4.9836 4.5339 3.8372
13 6 4.0661 5.6553 3.6205
14 6 5.1483 4.0274 5.0753
15 8 5.9076 3.0989 5.2545
16 6 4.3839 4.6105 6.2357
17 1 4.3540 5.6961 6.1423
18 7 5.0492 4.2453 7.4934
19 6 2.9566 4.0592 6.2349
20 6 2.1447 4.7441 7.3360
21 6 0.7392 4.2006 7.3356
22 1 0.4537 3.4422 6.6217
23 6 -0.1821 4.6708 8.2474
24 7 0.1660 5.5933 9.1178
25 14 -1.9246 3.9976 8.2464
26 1 -1.8898 2.5338 8.4940
27 1 -2.7122 4.6615 9.3161
28 1 -2.5566 4.2620 6.9289
29 6 3.3047 1.0914 0.5152
30 1 -1.0500 -0.0006 -0.0008
31 1 2.7689 -1.9377 -0.9159
32 1 5.2271 -1.9325 -0.9158
33 1 6.4596 -0.0047 -0.0155
34 1 6.2350 2.4496 0.6203
35 1 5.9055 4.7383 1.9641
36 1 6.6741 3.5656 3.0606
37 1 4.6070 6.5946 3.7350
38 1 3.6507 5.5956 2.6146
39 1 3.2581 5.6098 4.3506
40 1 5.0895 3.2431 7.6034
41 1 5.9710 4.6523 7.5462
42 1 2.4929 4.2528 5.2676
43 1 2.9821 2.9849 6.4171
44 1 2.6085 4.5505 8.3033
45 1 2.1192 5.8185 7.1538
46 1 -0.4820 5.9238 9.7595
47 1 2.7679 1.9383 0.9162
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001574765796.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:55:41
Heat of formation + Delta-G solvation = 15.967788 kcal
Electronic energy + Delta-G solvation = -29226.225775 eV
Core-core repulsion = 25182.694367 eV
Total energy + Delta-G solvation = -4043.531408 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.168 amu
Computer time = 1.17 seconds
Orbital eigenvalues (eV)
-40.96737 -39.92563 -38.65037 -35.66264 -35.27327 -35.17166 -33.62470 -32.76204
-30.83450 -30.33939 -30.05090 -28.66754 -26.78154 -25.81485 -23.82855 -23.65593
-22.71096 -20.90669 -20.25283 -19.55274 -18.97050 -17.64722 -17.30369 -17.03264
-16.62544 -16.30322 -15.88162 -15.69201 -15.40916 -15.02656 -14.75858 -14.66074
-14.37509 -14.04643 -13.75277 -13.56016 -13.46294 -13.30704 -12.98715 -12.54687
-12.27773 -12.18598 -12.03740 -11.93567 -11.92596 -11.51550 -11.48019 -10.82074
-10.74527 -10.62849 -10.51283 -10.48504 -10.17431 -10.08985 -9.71081 -9.31335
-8.96342 -8.87386 -8.78141 -8.41662 -8.33165 -8.17090 -5.89120 -3.90627
0.65955 1.06574 2.27540 2.38972 2.60980 2.83859 2.86754 3.09647
3.40386 3.44003 3.47801 3.78456 4.05443 4.42134 4.53205 4.58756
4.64686 4.78949 4.86840 4.90995 4.99846 5.11183 5.15365 5.21750
5.25393 5.43505 5.45184 5.46490 5.56562 5.79722 5.84924 5.88232
5.95051 6.03507 6.18299 6.23660 6.27599 6.54444 6.70809 6.75878
7.03492 7.13576 7.25132 7.37874 7.49776 7.80180 7.82086 7.85731
8.00923 8.17662 8.21287 8.54550 9.17146 9.72260 11.21800
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.008762 B = 0.003048 C = 0.002402
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3194.908819 B = 9184.804632 C =11654.256529
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C -0.153 4.153
3 C 0.029 3.971
4 C -0.114 4.114
5 C -0.101 4.101
6 C -0.138 4.138
7 C 0.149 3.851
8 N -0.677 5.677
9 C 0.491 3.509
10 O -0.494 6.494
11 C 0.098 3.902
12 N -0.601 5.601
13 C 0.072 3.928
14 C 0.492 3.508
15 O -0.551 6.551
16 C 0.081 3.919
17 H 0.099 0.901
18 N -0.806 5.806
19 C -0.095 4.095
20 C 0.033 3.967
21 C -0.521 4.521
22 H 0.052 0.948
23 C 0.058 3.942
24 N -0.894 5.894
25 Si 0.888 3.112
26 H -0.278 1.278
27 H -0.288 1.288
28 H -0.278 1.278
29 C -0.097 4.097
30 H 0.226 0.774
31 H 0.127 0.873
32 H 0.131 0.869
33 H 0.129 0.871
34 H 0.411 0.589
35 H 0.109 0.891
36 H 0.114 0.886
37 H 0.060 0.940
38 H 0.069 0.931
39 H 0.094 0.906
40 H 0.348 0.652
41 H 0.333 0.667
42 H 0.058 0.942
43 H 0.052 0.948
44 H 0.034 0.966
45 H 0.012 0.988
46 H 0.259 0.741
47 H 0.144 0.856
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.984 -5.409 -23.437 27.822
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C -0.153 4.153
3 C 0.028 3.972
4 C -0.132 4.132
5 C -0.119 4.119
6 C -0.159 4.159
7 C 0.055 3.945
8 N -0.324 5.324
9 C 0.277 3.723
10 O -0.365 6.365
11 C -0.029 4.029
12 N -0.334 5.334
13 C -0.071 4.071
14 C 0.280 3.720
15 O -0.428 6.428
16 C -0.035 4.035
17 H 0.117 0.883
18 N -0.334 5.334
19 C -0.134 4.134
20 C -0.004 4.004
21 C -0.559 4.559
22 H 0.070 0.930
23 C -0.143 4.143
24 N -0.533 5.533
25 Si 0.716 3.284
26 H -0.203 1.203
27 H -0.214 1.214
28 H -0.203 1.203
29 C -0.117 4.117
30 H 0.242 0.758
31 H 0.145 0.855
32 H 0.149 0.851
33 H 0.147 0.853
34 H 0.247 0.753
35 H 0.127 0.873
36 H 0.132 0.868
37 H 0.078 0.922
38 H 0.088 0.912
39 H 0.112 0.888
40 H 0.162 0.838
41 H 0.145 0.855
42 H 0.076 0.924
43 H 0.071 0.929
44 H 0.053 0.947
45 H 0.031 0.969
46 H 0.069 0.931
47 H 0.162 0.838
Dipole moment (debyes) X Y Z Total
from point charges 12.941 -5.526 -22.371 26.428
hybrid contribution -0.049 -0.737 -0.950 1.203
sum 12.893 -6.263 -23.321 27.374
Atomic orbital electron populations
1.24935 0.95808 0.98880 0.98830 1.19944 0.91982 1.01678 1.01696
1.15807 0.86804 0.94876 0.99728 1.21177 0.94177 0.97695 1.00191
1.20840 0.93689 0.97891 0.99493 1.21009 1.00050 0.92529 1.02265
1.17579 0.91005 0.88266 0.97630 1.43537 1.26265 1.30596 1.32035
1.21682 0.87659 0.83756 0.79180 1.90794 1.20439 1.65007 1.60307
1.21217 0.96124 0.95015 0.90579 1.47626 1.44755 1.34695 1.06330
1.22043 0.93831 0.87447 1.03770 1.22875 0.81643 0.82626 0.84861
1.90628 1.38802 1.28663 1.84729 1.21865 0.96241 1.00844 0.84528
0.88296 1.59015 1.24734 1.17441 1.32219 1.21697 0.89560 1.00411
1.01692 1.19006 0.93029 0.94837 0.93527 1.21260 0.96075 1.22108
1.16486 0.93013 1.24977 0.98527 0.95183 0.95574 1.69967 1.34722
1.29122 1.19528 0.86722 0.84908 0.79237 0.77502 1.20323 1.21350
1.20345 1.21365 0.92562 0.99264 0.98527 0.75775 0.85518 0.85068
0.85347 0.75322 0.87290 0.86769 0.92174 0.91231 0.88801 0.83814
0.85538 0.92351 0.92884 0.94722 0.96915 0.93101 0.83818
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.86 19.25 29.55 0.57 -1.29 16
2 C -0.15 -2.00 13.24 -38.84 -0.51 -2.51 16
3 C 0.03 0.36 5.72 -107.03 -0.61 -0.25 16
4 C -0.11 -1.14 9.75 -39.17 -0.38 -1.52 16
5 C -0.10 -0.84 10.02 -39.67 -0.40 -1.23 16
6 C -0.14 -1.19 9.96 -39.32 -0.39 -1.59 16
7 C 0.15 1.64 6.29 -83.74 -0.53 1.12 16
8 N -0.68 -6.18 5.34 -9.90 -0.05 -6.23 16
9 C 0.49 6.06 7.74 -10.99 -0.09 5.98 16
10 O -0.49 -8.58 13.86 5.55 0.08 -8.50 16
11 C 0.10 0.97 5.89 -5.19 -0.03 0.94 16
12 N -0.60 -7.88 2.36 -182.95 -0.43 -8.32 16
13 C 0.07 0.80 9.85 59.85 0.59 1.39 16
14 C 0.49 8.14 6.91 -10.99 -0.08 8.06 16
15 O -0.55 -10.39 15.83 5.56 0.09 -10.30 16
16 C 0.08 1.42 2.31 -68.86 -0.16 1.26 16
17 H 0.10 1.60 7.21 -51.93 -0.37 1.23 16
18 N -0.81 -14.07 8.44 -5.65 -0.05 -14.12 16
19 C -0.10 -2.06 4.45 -26.73 -0.12 -2.18 16
20 C 0.03 0.87 4.86 -27.89 -0.14 0.73 16
21 C -0.52 -15.21 9.11 -34.44 -0.31 -15.52 16
22 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16
23 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16
24 N -0.89 -27.36 13.29 55.43 0.74 -26.62 16
25 Si 0.89 22.35 29.54 -169.99 -5.02 17.33 16
26 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16
27 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16
28 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16
29 C -0.10 -1.30 8.40 -38.99 -0.33 -1.63 16
30 H 0.23 1.61 7.80 -54.09 -0.42 1.18 16
31 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16
32 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16
33 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16
34 H 0.41 1.98 8.82 -40.82 -0.36 1.62 16
35 H 0.11 0.60 8.07 -51.93 -0.42 0.18 16
36 H 0.11 1.10 7.42 -51.93 -0.39 0.71 16
37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
38 H 0.07 0.68 8.07 -51.93 -0.42 0.26 16
39 H 0.09 1.28 4.82 -51.93 -0.25 1.03 16
40 H 0.35 6.26 8.58 -39.29 -0.34 5.92 16
41 H 0.33 4.94 9.06 -39.29 -0.36 4.58 16
42 H 0.06 1.23 6.42 -51.93 -0.33 0.90 16
43 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16
44 H 0.03 0.98 7.75 -51.92 -0.40 0.58 16
45 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16
46 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16
47 H 0.14 2.22 6.22 -52.49 -0.33 1.89 16
LS Contribution 404.09 15.07 6.09 6.09
Total: -1.00 -38.54 404.09 -8.04 -46.57
By element:
Atomic # 1 Polarization: 17.19 SS G_CDS: -6.46 Total: 10.72 kcal
Atomic # 6 Polarization: -3.61 SS G_CDS: -3.01 Total: -6.62 kcal
Atomic # 7 Polarization: -55.49 SS G_CDS: 0.20 Total: -55.29 kcal
Atomic # 8 Polarization: -18.97 SS G_CDS: 0.17 Total: -18.80 kcal
Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal
Total LS contribution 6.09 Total: 6.09 kcal
Total: -38.54 -8.04 -46.57 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001574765796.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.540 kcal
(2) G-P(sol) polarization free energy of solvation -38.537 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.004 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.573 kcal
(6) G-S(sol) free energy of system = (1) + (5) 15.968 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.17 seconds