Wall clock time and date at job start Sat Apr 11 2020 06:55:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17399 * 1
3 3 C 1.43202 * 179.97438 * 2 1
4 4 C 1.39585 * 120.10601 * 25.30988 * 3 2 1
5 5 C 1.37998 * 119.99549 * 179.97438 * 4 3 2
6 6 C 1.38245 * 120.21628 * 359.74477 * 5 4 3
7 7 C 1.38940 * 120.21688 * 0.51027 * 6 5 4
8 8 N 1.39946 * 120.00513 * 179.76280 * 7 6 5
9 9 C 1.34767 * 120.00289 * 214.82689 * 8 7 6
10 10 O 1.21283 * 120.00326 * 355.39138 * 9 8 7
11 11 C 1.50703 * 119.99749 * 175.38234 * 9 8 7
12 12 N 1.46507 * 109.46820 * 180.02562 * 11 9 8
13 13 C 1.46500 * 120.00052 * 270.00016 * 12 11 9
14 14 C 1.34778 * 119.99790 * 90.00846 * 12 11 9
15 15 O 1.21277 * 119.99846 * 359.97438 * 14 12 11
16 16 C 1.50696 * 119.99890 * 180.27500 * 14 12 11
17 17 H 1.09004 * 109.47087 * 319.72252 * 16 14 12
18 18 N 1.46902 * 109.47273 * 199.72254 * 16 14 12
19 19 C 1.53005 * 109.47519 * 79.71770 * 16 14 12
20 20 C 1.52994 * 109.47413 * 185.00187 * 19 16 14
21 21 C 1.50693 * 109.47190 * 180.02562 * 20 19 16
22 22 H 1.07999 * 119.99952 * 0.02562 * 21 20 19
23 23 C 1.37878 * 120.00208 * 179.97438 * 21 20 19
24 24 N 1.31523 * 120.00015 * 359.97438 * 23 21 20
25 25 Si 1.86803 * 120.00224 * 179.97438 * 23 21 20
26 26 H 1.48505 * 109.47027 * 60.00311 * 25 23 21
27 27 H 1.48503 * 109.46849 * 179.97438 * 25 23 21
28 28 H 1.48497 * 109.47091 * 300.00209 * 25 23 21
29 29 C 1.38650 * 119.99716 * 359.49521 * 7 6 5
30 30 H 4.52047 * 14.03198 * 0.02562 * 4 2 1
31 31 H 1.07996 * 120.00626 * 359.95707 * 4 3 2
32 32 H 1.08004 * 119.89375 * 180.02562 * 5 4 3
33 33 H 1.08004 * 119.88910 * 180.25500 * 6 5 4
34 34 H 0.97001 * 119.98940 * 34.82918 * 8 7 6
35 35 H 1.09000 * 109.46977 * 60.00519 * 11 9 8
36 36 H 1.09000 * 109.47320 * 300.00362 * 11 9 8
37 37 H 1.08994 * 109.47010 * 270.00715 * 13 12 11
38 38 H 1.09000 * 109.46849 * 30.00662 * 13 12 11
39 39 H 1.08995 * 109.46862 * 150.00092 * 13 12 11
40 40 H 1.00902 * 110.99330 * 299.99961 * 18 16 14
41 41 H 1.00900 * 110.99590 * 63.95087 * 18 16 14
42 42 H 1.09000 * 109.46687 * 305.00627 * 19 16 14
43 43 H 1.08997 * 109.46465 * 65.00118 * 19 16 14
44 44 H 1.09009 * 109.47086 * 300.00258 * 20 19 16
45 45 H 1.09003 * 109.47264 * 60.00041 * 20 19 16
46 46 H 0.96997 * 120.00085 * 180.02562 * 24 23 21
47 47 H 1.07996 * 120.10482 * 180.22928 * 29 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6060 0.0006 0.0000
4 6 3.3067 -1.0907 -0.5162
5 6 4.6866 -1.0874 -0.5156
6 6 5.3796 -0.0035 -0.0096
7 6 4.6912 1.0852 0.5113
8 7 5.3972 2.1781 1.0269
9 6 4.9131 2.8531 2.0881
10 8 3.8263 2.5673 2.5443
11 6 5.7223 3.9631 2.7080
12 7 4.9836 4.5339 3.8372
13 6 4.0661 5.6553 3.6205
14 6 5.1483 4.0274 5.0753
15 8 5.9076 3.0989 5.2545
16 6 4.3839 4.6105 6.2357
17 1 4.3540 5.6961 6.1423
18 7 5.0492 4.2453 7.4934
19 6 2.9566 4.0592 6.2349
20 6 2.1447 4.7441 7.3360
21 6 0.7392 4.2006 7.3356
22 1 0.4537 3.4422 6.6217
23 6 -0.1821 4.6708 8.2474
24 7 0.1660 5.5933 9.1178
25 14 -1.9246 3.9976 8.2464
26 1 -1.8898 2.5338 8.4940
27 1 -2.7122 4.6615 9.3161
28 1 -2.5566 4.2620 6.9289
29 6 3.3047 1.0914 0.5152
30 1 -1.0500 -0.0006 -0.0008
31 1 2.7689 -1.9377 -0.9159
32 1 5.2271 -1.9325 -0.9158
33 1 6.4596 -0.0047 -0.0155
34 1 6.2350 2.4496 0.6203
35 1 5.9055 4.7383 1.9641
36 1 6.6741 3.5656 3.0606
37 1 4.6070 6.5946 3.7350
38 1 3.6507 5.5956 2.6146
39 1 3.2581 5.6098 4.3506
40 1 5.0895 3.2431 7.6034
41 1 5.9710 4.6523 7.5462
42 1 2.4929 4.2528 5.2676
43 1 2.9821 2.9849 6.4171
44 1 2.6085 4.5505 8.3033
45 1 2.1192 5.8185 7.1538
46 1 -0.4820 5.9238 9.7595
47 1 2.7679 1.9383 0.9162
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001574765796.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:55:40
Heat of formation + Delta-G solvation = -11.972089 kcal
Electronic energy + Delta-G solvation = -29227.437339 eV
Core-core repulsion = 25182.694367 eV
Total energy + Delta-G solvation = -4044.742972 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.168 amu
Computer time = 1.25 seconds
Orbital eigenvalues (eV)
-41.92930 -41.04390 -39.58054 -36.92525 -36.69742 -36.14371 -34.85951 -34.45918
-31.98632 -31.66628 -31.16345 -29.60943 -28.14022 -27.31010 -25.23704 -24.60134
-23.77688 -22.25720 -21.65588 -20.51434 -20.07165 -18.65918 -18.53143 -18.29454
-17.87583 -17.45403 -17.09654 -16.92144 -16.48761 -16.46141 -16.13838 -15.68752
-15.60388 -15.23917 -14.84118 -14.65628 -14.49145 -14.32053 -14.28372 -13.99946
-13.74301 -13.47802 -13.41331 -13.01266 -12.95409 -12.79240 -12.70027 -12.54620
-12.35635 -12.26453 -11.76176 -11.69578 -11.65063 -11.33678 -11.28133 -11.12502
-11.03983 -10.51268 -9.84222 -9.69519 -9.66561 -9.20837 -8.16528 -6.26702
-0.13629 0.25060 1.25753 1.38098 1.41098 1.43276 1.49215 1.66439
1.80210 1.99052 2.18718 2.42146 2.94723 3.15661 3.27575 3.43552
3.62059 3.66329 3.94581 4.03850 4.10903 4.13648 4.16980 4.19850
4.27334 4.28170 4.45305 4.52428 4.65587 4.66585 4.70051 4.84813
4.97583 5.09806 5.18842 5.21458 5.26277 5.32170 5.42147 5.45943
5.53254 5.80687 5.93315 5.94975 5.99832 6.18250 6.28731 6.32052
6.49124 6.49937 6.90016 6.95032 7.06253 7.40860 8.94383
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.008762 B = 0.003048 C = 0.002402
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3194.908819 B = 9184.804632 C =11654.256529
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C -0.201 4.201
3 C 0.000 4.000
4 C -0.118 4.118
5 C -0.093 4.093
6 C -0.128 4.128
7 C 0.134 3.866
8 N -0.657 5.657
9 C 0.487 3.513
10 O -0.555 6.555
11 C 0.098 3.902
12 N -0.596 5.596
13 C 0.067 3.933
14 C 0.492 3.508
15 O -0.578 6.578
16 C 0.088 3.912
17 H 0.115 0.885
18 N -0.817 5.817
19 C -0.078 4.078
20 C 0.045 3.955
21 C -0.548 4.548
22 H 0.046 0.954
23 C 0.007 3.993
24 N -0.926 5.926
25 Si 0.957 3.043
26 H -0.274 1.274
27 H -0.277 1.277
28 H -0.267 1.267
29 C -0.126 4.126
30 H 0.259 0.741
31 H 0.143 0.857
32 H 0.170 0.830
33 H 0.165 0.835
34 H 0.433 0.567
35 H 0.163 0.837
36 H 0.124 0.876
37 H 0.095 0.905
38 H 0.085 0.915
39 H 0.064 0.936
40 H 0.343 0.657
41 H 0.349 0.651
42 H 0.059 0.941
43 H 0.028 0.972
44 H 0.007 0.993
45 H -0.001 1.001
46 H 0.264 0.736
47 H 0.111 0.889
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.404 -5.813 -25.651 30.480
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C -0.201 4.201
3 C -0.001 4.001
4 C -0.136 4.136
5 C -0.111 4.111
6 C -0.148 4.148
7 C 0.039 3.961
8 N -0.305 5.305
9 C 0.274 3.726
10 O -0.431 6.431
11 C -0.028 4.028
12 N -0.327 5.327
13 C -0.074 4.074
14 C 0.280 3.720
15 O -0.458 6.458
16 C -0.028 4.028
17 H 0.133 0.867
18 N -0.346 5.346
19 C -0.116 4.116
20 C 0.008 3.992
21 C -0.586 4.586
22 H 0.064 0.936
23 C -0.192 4.192
24 N -0.566 5.566
25 Si 0.781 3.219
26 H -0.199 1.199
27 H -0.202 1.202
28 H -0.192 1.192
29 C -0.147 4.147
30 H 0.275 0.725
31 H 0.160 0.840
32 H 0.187 0.813
33 H 0.183 0.817
34 H 0.274 0.726
35 H 0.181 0.819
36 H 0.142 0.858
37 H 0.113 0.887
38 H 0.104 0.896
39 H 0.082 0.918
40 H 0.156 0.844
41 H 0.163 0.837
42 H 0.077 0.923
43 H 0.047 0.953
44 H 0.026 0.974
45 H 0.018 0.982
46 H 0.073 0.927
47 H 0.129 0.871
Dipole moment (debyes) X Y Z Total
from point charges 14.413 -5.902 -24.657 29.164
hybrid contribution -0.490 -0.623 -0.337 0.862
sum 13.923 -6.525 -24.994 29.345
Atomic orbital electron populations
1.25827 0.96694 0.97405 0.97484 1.20634 0.93127 1.03200 1.03155
1.16110 0.87084 0.95870 1.01018 1.21470 0.95296 0.97210 0.99645
1.21326 0.93014 0.98742 0.98012 1.21423 1.01792 0.91266 1.00343
1.17783 0.90394 0.89659 0.98223 1.43338 1.26603 1.29614 1.30970
1.22171 0.87029 0.84016 0.79352 1.90792 1.23118 1.66855 1.62309
1.21587 0.95073 0.95732 0.90414 1.47615 1.44436 1.34528 1.06127
1.22185 0.93315 0.88195 1.03750 1.22403 0.81477 0.82339 0.85802
1.90608 1.40128 1.29672 1.85356 1.21610 0.93955 1.01518 0.85713
0.86723 1.58972 1.25927 1.17227 1.32467 1.21354 0.91984 0.98373
0.99904 1.18782 0.92542 0.94187 0.93698 1.21654 0.97811 1.22386
1.16789 0.93572 1.25842 1.03004 0.95330 0.94981 1.70081 1.36341
1.30079 1.20055 0.85641 0.79521 0.78578 0.78143 1.19907 1.20228
1.19233 1.21242 0.93983 0.99019 1.00407 0.72526 0.83965 0.81271
0.81715 0.72637 0.81924 0.85812 0.88685 0.89638 0.91751 0.84381
0.83737 0.92254 0.95312 0.97413 0.98239 0.92740 0.87123
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.59 19.25 74.32 1.43 -2.16 16
2 C -0.20 -5.58 13.24 30.02 0.40 -5.18 16
3 C 0.00 -0.01 5.72 -21.43 -0.12 -0.13 16
4 C -0.12 -2.28 9.75 22.54 0.22 -2.06 16
5 C -0.09 -1.29 10.02 22.21 0.22 -1.07 16
6 C -0.13 -1.87 9.96 22.44 0.22 -1.65 16
7 C 0.13 2.86 6.29 38.11 0.24 3.10 16
8 N -0.66 -11.01 5.34 -303.62 -1.62 -12.63 16
9 C 0.49 11.71 7.74 87.66 0.68 12.39 16
10 O -0.55 -20.12 13.86 -3.04 -0.04 -20.16 16
11 C 0.10 1.71 5.89 85.63 0.50 2.21 16
12 N -0.60 -14.87 2.36 -851.13 -2.01 -16.88 16
13 C 0.07 1.41 9.85 127.77 1.26 2.67 16
14 C 0.49 16.20 6.91 87.66 0.61 16.81 16
15 O -0.58 -21.73 15.83 -3.02 -0.05 -21.78 16
16 C 0.09 3.14 2.31 44.17 0.10 3.24 16
17 H 0.12 3.70 7.21 -2.39 -0.02 3.68 16
18 N -0.82 -29.14 8.44 -171.79 -1.45 -30.59 16
19 C -0.08 -3.52 4.45 30.59 0.14 -3.38 16
20 C 0.05 2.47 4.86 29.84 0.15 2.61 16
21 C -0.55 -33.04 9.11 25.60 0.23 -32.81 16
22 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16
23 C 0.01 0.40 5.46 84.65 0.46 0.86 16
24 N -0.93 -57.60 13.29 21.45 0.28 -57.31 16
25 Si 0.96 46.32 29.54 68.60 2.03 48.35 16
26 H -0.27 -13.02 7.11 99.48 0.71 -12.32 16
27 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16
28 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16
29 C -0.13 -3.59 8.40 22.65 0.19 -3.40 16
30 H 0.26 3.45 7.80 -4.42 -0.03 3.42 16
31 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16
32 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16
33 H 0.17 1.17 8.06 -2.91 -0.02 1.14 16
34 H 0.43 2.87 8.82 -92.71 -0.82 2.06 16
35 H 0.16 1.07 8.07 -2.39 -0.02 1.05 16
36 H 0.12 2.02 7.42 -2.39 -0.02 2.00 16
37 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16
38 H 0.08 1.53 8.07 -2.39 -0.02 1.51 16
39 H 0.06 1.77 4.82 -2.39 -0.01 1.75 16
40 H 0.34 12.80 8.58 -89.69 -0.77 12.03 16
41 H 0.35 10.32 9.06 -89.69 -0.81 9.51 16
42 H 0.06 2.64 6.42 -2.39 -0.02 2.62 16
43 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16
44 H 0.01 0.45 7.75 -2.38 -0.02 0.43 16
45 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16
46 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16
47 H 0.11 3.81 6.22 -2.91 -0.02 3.80 16
Total: -1.00 -89.63 404.09 2.70 -86.93
By element:
Atomic # 1 Polarization: 33.38 SS G_CDS: -1.37 Total: 32.01 kcal
Atomic # 6 Polarization: -14.86 SS G_CDS: 6.93 Total: -7.94 kcal
Atomic # 7 Polarization: -112.62 SS G_CDS: -4.80 Total: -117.41 kcal
Atomic # 8 Polarization: -41.86 SS G_CDS: -0.09 Total: -41.95 kcal
Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal
Total: -89.63 2.70 -86.93 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001574765796.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.962 kcal
(2) G-P(sol) polarization free energy of solvation -89.631 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.668 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.696 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.934 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.972 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.25 seconds