Wall clock time and date at job start Sat Apr 11 2020 06:55:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31618 * 1
3 3 Si 1.86804 * 119.99854 * 2 1
4 4 H 1.48497 * 109.47015 * 180.02562 * 3 2 1
5 5 H 1.48508 * 109.46793 * 299.99312 * 3 2 1
6 6 H 1.48498 * 109.47476 * 59.99308 * 3 2 1
7 7 C 1.38810 * 120.00026 * 179.97438 * 2 1 3
8 8 H 1.08002 * 119.99995 * 164.91129 * 7 2 1
9 9 N 1.36928 * 119.99977 * 344.90960 * 7 2 1
10 10 C 1.47605 * 118.64423 * 331.53834 * 9 7 2
11 11 C 1.53949 * 112.14534 * 222.15678 * 10 9 7
12 12 C 1.50879 * 110.09449 * 40.56005 * 11 10 9
13 13 C 1.52564 * 109.35270 * 268.11591 * 12 11 10
14 14 C 1.47103 * 114.31102 * 85.03785 * 13 12 11
15 15 C 1.44581 * 118.64042 * 151.55684 * 9 7 2
16 16 H 1.08998 * 109.45110 * 209.27481 * 15 9 7
17 17 C 1.53003 * 109.45200 * 329.22222 * 15 9 7
18 18 N 1.46499 * 109.46804 * 305.05583 * 17 15 9
19 19 C 1.34773 * 119.99868 * 179.97438 * 18 17 15
20 20 O 1.21762 * 120.00002 * 359.97438 * 19 18 17
21 21 C 1.46188 * 120.00441 * 179.97438 * 19 18 17
22 22 C 1.38716 * 126.76704 * 179.97438 * 21 19 18
23 23 N 1.32280 * 108.17957 * 180.02562 * 22 21 19
24 24 C 1.33134 * 109.71439 * 0.02562 * 23 22 21
25 25 C 1.40628 * 132.29167 * 179.97438 * 24 23 22
26 26 C 1.36306 * 119.22242 * 180.02562 * 25 24 23
27 27 C 1.39876 * 120.12524 * 359.97438 * 26 25 24
28 28 N 1.30798 * 120.77425 * 0.02562 * 27 26 25
29 29 N 1.36647 * 108.62890 * 359.97438 * 24 23 22
30 30 H 0.97005 * 119.99897 * 0.02562 * 1 2 3
31 31 H 1.09000 * 108.94687 * 342.84261 * 10 9 7
32 32 H 1.08992 * 108.94884 * 101.47353 * 10 9 7
33 33 H 1.09004 * 109.36756 * 160.75160 * 11 10 9
34 34 H 1.09000 * 109.36868 * 280.49657 * 11 10 9
35 35 H 1.09005 * 109.48915 * 28.07352 * 12 11 10
36 36 H 1.09001 * 109.49777 * 148.14615 * 12 11 10
37 37 H 1.09004 * 108.51566 * 206.28021 * 13 12 11
38 38 H 1.09004 * 108.50967 * 323.92671 * 13 12 11
39 39 H 1.09002 * 109.31295 * 176.90731 * 14 13 12
40 40 H 1.08992 * 109.35632 * 57.42475 * 14 13 12
41 41 H 1.08993 * 109.47181 * 185.04932 * 17 15 9
42 42 H 1.09002 * 109.46277 * 65.05255 * 17 15 9
43 43 H 0.96998 * 120.00404 * 359.97438 * 18 17 15
44 44 H 1.08005 * 125.91165 * 0.02562 * 22 21 19
45 45 H 1.08005 * 120.38616 * 0.30710 * 25 24 23
46 46 H 1.08002 * 119.93958 * 180.02562 * 26 25 24
47 47 H 1.07997 * 119.60902 * 180.02562 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.7101 1.3465 -0.0006
5 1 1.8914 2.3964 -1.2127
6 1 1.8913 2.3966 1.2124
7 6 2.0102 -1.2021 0.0005
8 1 3.0623 -1.2184 -0.2429
9 7 1.3610 -2.3674 0.3098
10 6 0.1955 -2.3096 1.2136
11 6 0.1999 -3.4566 2.2404
12 6 1.6002 -3.6890 2.7519
13 6 2.2830 -4.7486 1.8924
14 6 2.9143 -4.2237 0.6718
15 6 1.8458 -3.6036 -0.2622
16 1 1.0156 -4.3005 -0.3769
17 6 2.4676 -3.3221 -1.6315
18 7 1.4929 -2.6284 -2.4771
19 6 1.8224 -2.2765 -3.7356
20 8 2.9303 -2.5347 -4.1697
21 6 0.8497 -1.5847 -4.5797
22 6 1.0381 -1.1599 -5.8867
23 7 -0.0771 -0.5782 -6.2964
24 6 -0.9816 -0.6032 -5.3198
25 6 -2.3027 -0.1276 -5.2412
26 6 -3.0036 -0.2982 -4.0847
27 6 -2.4106 -0.9400 -2.9925
28 7 -1.1821 -1.3833 -3.0630
29 7 -0.4340 -1.2254 -4.2335
30 1 -0.4850 0.8401 -0.0004
31 1 0.2069 -1.3583 1.7456
32 1 -0.7164 -2.3700 0.6196
33 1 -0.4513 -3.1971 3.0751
34 1 -0.1656 -4.3675 1.7665
35 1 2.1657 -2.7586 2.6995
36 1 1.5577 -4.0314 3.7859
37 1 3.0476 -5.2414 2.4930
38 1 1.5395 -5.4914 1.6033
39 1 3.4216 -5.0355 0.1506
40 1 3.6439 -3.4604 0.9420
41 1 2.7519 -4.2633 -2.1018
42 1 3.3514 -2.6964 -1.5073
43 1 0.6104 -2.4223 -2.1312
44 1 1.9393 -1.2829 -6.4691
45 1 -2.7580 0.3630 -6.0888
46 1 -4.0191 0.0622 -4.0118
47 1 -2.9738 -1.0711 -2.0804
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000969061749.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:55:37
Heat of formation + Delta-G solvation = 107.489184 kcal
Electronic energy + Delta-G solvation = -31783.579620 eV
Core-core repulsion = 27776.309629 eV
Total energy + Delta-G solvation = -4007.269991 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 1.58 seconds
Orbital eigenvalues (eV)
-42.32465 -39.01131 -38.08675 -37.58190 -34.47806 -33.64891 -33.37892 -31.69809
-31.00564 -30.68117 -29.43290 -27.01057 -25.71094 -24.61701 -23.61554 -23.42488
-22.45409 -21.30593 -20.18782 -19.71028 -19.17708 -18.23029 -17.35204 -16.52937
-16.00701 -15.96191 -15.62906 -15.51531 -14.98086 -14.62542 -14.24916 -13.98011
-13.77437 -13.59233 -13.55656 -13.40064 -12.92553 -12.83830 -12.78011 -12.40878
-12.07760 -11.95381 -11.48973 -11.25647 -11.10151 -11.00201 -10.98543 -10.87593
-10.58669 -10.20704 -10.04129 -9.99707 -9.88674 -9.71069 -9.64950 -9.55840
-9.38208 -9.29856 -8.42308 -8.31676 -7.93674 -6.67572 -5.82336 -3.25052
0.50193 1.07779 1.98091 2.54310 3.32515 3.40554 3.41889 3.45567
3.75310 3.91512 4.11388 4.26295 4.47074 4.58546 4.89918 5.20321
5.26872 5.34556 5.40535 5.41880 5.46133 5.52825 5.64432 5.64592
5.82176 5.85790 5.90272 6.01396 6.08672 6.14185 6.29671 6.36662
6.37641 6.56147 6.57440 6.61734 6.65051 6.69731 6.75392 6.83326
6.98988 7.09942 7.25229 7.39648 7.64521 7.66055 7.75648 7.82705
8.36423 8.42559 8.90663 9.20868 9.85298 10.30842 11.23503
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.010975 B = 0.004704 C = 0.004394
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2550.582866 B = 5950.348061 C = 6370.902253
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.891 5.891
2 C 0.016 3.984
3 Si 0.886 3.114
4 H -0.278 1.278
5 H -0.295 1.295
6 H -0.290 1.290
7 C -0.248 4.248
8 H 0.061 0.939
9 N -0.581 5.581
10 C 0.183 3.817
11 C -0.143 4.143
12 C -0.106 4.106
13 C -0.100 4.100
14 C -0.136 4.136
15 C 0.174 3.826
16 H 0.043 0.957
17 C 0.127 3.873
18 N -0.679 5.679
19 C 0.587 3.413
20 O -0.556 6.556
21 C -0.048 4.048
22 C 0.092 3.908
23 N -0.474 5.474
24 C 0.173 3.827
25 C -0.018 4.018
26 C -0.168 4.168
27 C 0.135 3.865
28 N -0.218 5.218
29 N -0.249 5.249
30 H 0.247 0.753
31 H 0.072 0.928
32 H 0.024 0.976
33 H 0.048 0.952
34 H 0.042 0.958
35 H 0.074 0.926
36 H 0.039 0.961
37 H 0.040 0.960
38 H 0.046 0.954
39 H 0.048 0.952
40 H 0.064 0.936
41 H 0.052 0.948
42 H 0.070 0.930
43 H 0.422 0.578
44 H 0.198 0.802
45 H 0.159 0.841
46 H 0.155 0.845
47 H 0.201 0.799
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.680 -4.676 -3.228 9.554
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.535 5.535
2 C -0.183 4.183
3 Si 0.717 3.283
4 H -0.203 1.203
5 H -0.223 1.223
6 H -0.217 1.217
7 C -0.378 4.378
8 H 0.079 0.921
9 N -0.303 5.303
10 C 0.058 3.942
11 C -0.182 4.182
12 C -0.144 4.144
13 C -0.138 4.138
14 C -0.177 4.177
15 C 0.065 3.935
16 H 0.061 0.939
17 C 0.003 3.997
18 N -0.329 5.329
19 C 0.372 3.628
20 O -0.436 6.436
21 C -0.168 4.168
22 C -0.069 4.069
23 N -0.195 5.195
24 C -0.072 4.072
25 C -0.045 4.045
26 C -0.194 4.194
27 C -0.058 4.058
28 N -0.028 5.028
29 N -0.020 5.020
30 H 0.057 0.943
31 H 0.091 0.909
32 H 0.042 0.958
33 H 0.067 0.933
34 H 0.061 0.939
35 H 0.092 0.908
36 H 0.057 0.943
37 H 0.059 0.941
38 H 0.064 0.936
39 H 0.067 0.933
40 H 0.082 0.918
41 H 0.070 0.930
42 H 0.088 0.912
43 H 0.262 0.738
44 H 0.215 0.785
45 H 0.176 0.824
46 H 0.173 0.827
47 H 0.218 0.782
Dipole moment (debyes) X Y Z Total
from point charges -6.503 -4.924 -3.554 8.898
hybrid contribution -0.378 1.371 0.599 1.543
sum -6.881 -3.553 -2.955 8.289
Atomic orbital electron populations
1.70049 1.04714 1.24564 1.54208 1.24852 0.95167 0.97617 1.00637
0.86475 0.79933 0.84962 0.76947 1.20341 1.22255 1.21720 1.19019
0.92089 0.84581 1.42089 0.92091 1.43670 1.34035 1.01631 1.50929
1.20961 0.88503 0.95326 0.89367 1.22076 0.96076 1.00515 0.99542
1.20943 0.97100 0.99818 0.96519 1.20288 0.98975 0.97904 0.96629
1.21372 0.99621 0.99761 0.96910 1.20501 0.93984 0.89541 0.89499
0.93927 1.21544 0.92665 0.95178 0.90358 1.45765 1.19212 1.56578
1.11352 1.16528 0.85448 0.78960 0.81872 1.90797 1.20924 1.57415
1.74439 1.21573 0.83709 1.13214 0.98314 1.23077 0.97153 0.95944
0.90727 1.70410 1.00628 1.21473 1.26945 1.21209 0.96984 1.03220
0.85747 1.20525 0.88843 0.95809 0.99362 1.21565 1.02584 1.02273
0.92961 1.24179 0.90118 0.91800 0.99747 1.76017 1.06841 1.19830
1.00097 1.47071 1.10818 1.35275 1.08822 0.94321 0.90927 0.95822
0.93329 0.93890 0.90759 0.94260 0.94090 0.93573 0.93303 0.91774
0.93019 0.91162 0.73848 0.78503 0.82353 0.82704 0.78230
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -22.23 11.12 55.49 0.62 -21.61 16
2 C 0.02 0.41 4.87 -17.43 -0.08 0.33 16
3 Si 0.89 21.50 29.58 -169.99 -5.03 16.47 16
4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16
5 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16
6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
7 C -0.25 -6.08 7.62 -15.06 -0.11 -6.20 16
8 H 0.06 1.59 6.75 -52.49 -0.35 1.24 16
9 N -0.58 -12.45 1.77 -164.46 -0.29 -12.75 16
10 C 0.18 3.83 4.66 -2.94 -0.01 3.81 16
11 C -0.14 -2.47 5.71 -27.30 -0.16 -2.62 16
12 C -0.11 -1.76 5.51 -28.02 -0.15 -1.92 16
13 C -0.10 -1.56 5.16 -29.79 -0.15 -1.71 16
14 C -0.14 -2.28 5.06 -28.57 -0.14 -2.43 16
15 C 0.17 3.30 2.19 -67.97 -0.15 3.16 16
16 H 0.04 0.81 8.06 -51.93 -0.42 0.39 16
17 C 0.13 2.54 4.53 -4.04 -0.02 2.52 16
18 N -0.68 -14.40 4.71 -61.77 -0.29 -14.69 16
19 C 0.59 12.68 7.77 -13.07 -0.10 12.58 16
20 O -0.56 -12.76 16.91 5.13 0.09 -12.68 16
21 C -0.05 -0.95 7.10 -81.85 -0.58 -1.53 16
22 C 0.09 1.63 11.69 -17.18 -0.20 1.43 16
23 N -0.47 -8.25 11.25 -12.24 -0.14 -8.39 16
24 C 0.17 2.88 7.85 -156.07 -1.23 1.65 16
25 C -0.02 -0.21 10.11 -39.38 -0.40 -0.61 16
26 C -0.17 -1.70 10.03 -39.66 -0.40 -2.10 16
27 C 0.13 1.75 11.30 -17.38 -0.20 1.55 16
28 N -0.22 -3.85 10.04 30.62 0.31 -3.55 16
29 N -0.25 -4.64 4.05 -8.68 -0.04 -4.67 16
30 H 0.25 6.19 8.31 -40.82 -0.34 5.85 16
31 H 0.07 1.73 6.46 -51.93 -0.34 1.39 16
32 H 0.02 0.53 8.01 -51.93 -0.42 0.11 16
33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16
34 H 0.04 0.71 7.31 -51.93 -0.38 0.33 16
35 H 0.07 1.43 7.48 -51.93 -0.39 1.04 16
36 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16
37 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16
38 H 0.05 0.69 7.35 -51.93 -0.38 0.31 16
39 H 0.05 0.73 8.11 -51.93 -0.42 0.31 16
40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16
41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16
42 H 0.07 1.53 6.85 -51.93 -0.36 1.18 16
43 H 0.42 9.21 6.07 -40.82 -0.25 8.96 16
44 H 0.20 2.94 8.06 -52.48 -0.42 2.52 16
45 H 0.16 1.37 8.06 -52.48 -0.42 0.95 16
46 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16
47 H 0.20 2.01 8.06 -52.49 -0.42 1.59 16
LS Contribution 375.60 15.07 5.66 5.66
Total: -1.00 -30.06 375.60 -9.84 -39.90
By element:
Atomic # 1 Polarization: 15.03 SS G_CDS: -6.64 Total: 8.39 kcal
Atomic # 6 Polarization: 12.00 SS G_CDS: -4.09 Total: 7.91 kcal
Atomic # 7 Polarization: -65.83 SS G_CDS: 0.17 Total: -65.66 kcal
Atomic # 8 Polarization: -12.76 SS G_CDS: 0.09 Total: -12.68 kcal
Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal
Total LS contribution 5.66 Total: 5.66 kcal
Total: -30.06 -9.84 -39.90 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000969061749.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 147.394 kcal
(2) G-P(sol) polarization free energy of solvation -30.063 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.330 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.904 kcal
(6) G-S(sol) free energy of system = (1) + (5) 107.489 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.58 seconds