Wall clock time and date at job start Sat Apr 11 2020 06:56:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42909 * 1
3 3 C 1.35835 * 116.99707 * 2 1
4 4 C 1.39469 * 119.74379 * 0.02562 * 3 2 1
5 5 C 1.36300 * 120.55688 * 179.97438 * 4 3 2
6 6 C 1.40192 * 119.90902 * 0.02562 * 5 4 3
7 7 C 1.41514 * 133.26864 * 180.29162 * 6 5 4
8 8 C 1.35921 * 107.76243 * 180.02562 * 7 6 5
9 9 C 1.46916 * 125.44645 * 179.90229 * 8 7 6
10 10 O 1.21673 * 120.00147 * 359.69441 * 9 8 7
11 11 N 1.34777 * 120.00091 * 179.68957 * 9 8 7
12 12 C 1.46506 * 119.99873 * 179.97438 * 11 9 8
13 13 C 1.52999 * 109.46684 * 180.02562 * 12 11 9
14 14 H 1.09001 * 110.88651 * 54.30828 * 13 12 11
15 15 C 1.55159 * 111.00243 * 178.17902 * 13 12 11
16 16 C 1.54321 * 102.94482 * 153.57592 * 15 13 12
17 17 N 1.47027 * 107.27033 * 337.81421 * 16 15 13
18 18 C 1.36939 * 125.64861 * 178.97640 * 17 16 15
19 19 H 1.08002 * 119.99783 * 179.97438 * 18 17 16
20 20 C 1.38813 * 119.99816 * 359.96883 * 18 17 16
21 21 N 1.31611 * 120.00066 * 0.02562 * 20 18 17
22 22 Si 1.86802 * 119.99691 * 180.02562 * 20 18 17
23 23 H 1.48504 * 109.47028 * 0.02562 * 22 20 18
24 24 H 1.48508 * 109.46887 * 119.99732 * 22 20 18
25 25 H 1.48496 * 109.47219 * 239.99763 * 22 20 18
26 26 C 1.47466 * 108.72055 * 358.96947 * 17 16 15
27 27 N 1.38307 * 109.11117 * 359.63693 * 8 7 6
28 28 H 0.97000 * 125.63563 * 180.21001 * 27 8 7
29 29 C 1.37525 * 108.74624 * 0.23095 * 27 8 7
30 30 C 1.38221 * 119.73649 * 179.97438 * 3 2 1
31 31 H 1.09000 * 109.47046 * 179.97438 * 1 2 3
32 32 H 1.09000 * 109.46769 * 299.99895 * 1 2 3
33 33 H 1.09001 * 109.46852 * 59.99834 * 1 2 3
34 34 H 1.07998 * 119.72007 * 359.97438 * 4 3 2
35 35 H 1.08006 * 120.04499 * 179.97438 * 5 4 3
36 36 H 1.08000 * 126.11952 * 359.96423 * 7 6 5
37 37 H 0.96995 * 120.00018 * 0.27786 * 11 9 8
38 38 H 1.09000 * 109.47212 * 300.00355 * 12 11 9
39 39 H 1.09001 * 109.46577 * 60.00430 * 12 11 9
40 40 H 1.08996 * 110.72387 * 271.94185 * 15 13 12
41 41 H 1.09010 * 110.71915 * 35.04170 * 15 13 12
42 42 H 1.09000 * 109.88199 * 97.22658 * 16 15 13
43 43 H 1.08995 * 109.88583 * 218.24066 * 16 15 13
44 44 H 0.97004 * 119.99616 * 180.02562 * 21 20 18
45 45 H 1.09007 * 110.35181 * 265.25221 * 26 17 16
46 46 H 1.09003 * 110.40292 * 142.92025 * 26 17 16
47 47 H 1.07997 * 120.11358 * 359.97438 * 30 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0457 1.2103 0.0000
4 6 1.2808 2.3766 0.0005
5 6 1.8822 3.5997 0.0011
6 6 3.2812 3.6908 0.0005
7 6 4.1822 4.7820 0.0061
8 6 5.4443 4.2777 0.0017
9 6 6.6797 5.0730 0.0031
10 8 6.6208 6.2883 0.0029
11 7 7.8781 4.4563 0.0046
12 6 9.1099 5.2494 0.0054
13 6 10.3195 4.3126 0.0064
14 1 10.2636 3.6047 -0.8206
15 6 11.6457 5.1166 -0.0387
16 6 12.6524 4.1613 0.6362
17 7 11.8783 3.2285 1.4684
18 6 12.3988 2.2079 2.2185
19 1 11.7431 1.5754 2.7986
20 6 13.7690 1.9862 2.2331
21 7 14.5680 2.7572 1.5265
22 14 14.4788 0.5934 3.2558
23 1 13.3782 -0.1204 3.9518
24 1 15.1998 -0.3545 2.3686
25 1 15.4227 1.1475 4.2594
26 6 10.4486 3.5738 1.3618
27 7 5.3799 2.8961 0.0017
28 1 6.1411 2.2949 0.0019
29 6 4.0585 2.5153 0.0010
30 6 3.4263 1.2764 0.0005
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3633 0.5138 0.8900
33 1 -0.3633 0.5139 -0.8900
34 1 0.2029 2.3099 0.0005
35 1 1.2819 4.4975 0.0011
36 1 3.9147 5.8284 0.0118
37 1 7.9250 3.4875 0.0007
38 1 9.1381 5.8777 -0.8849
39 1 9.1363 5.8785 0.8951
40 1 11.9384 5.3203 -1.0687
41 1 11.5533 6.0449 0.5253
42 1 13.2056 3.6089 -0.1233
43 1 13.3437 4.7301 1.2579
44 1 15.5255 2.6020 1.5365
45 1 10.1551 4.2302 2.1811
46 1 9.8386 2.6705 1.3612
47 1 4.0122 0.3691 0.0014
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001028727317.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:56:04
Heat of formation + Delta-G solvation = 10.384502 kcal
Electronic energy + Delta-G solvation = -28475.947000 eV
Core-core repulsion = 24432.173483 eV
Total energy + Delta-G solvation = -4043.773517 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.168 amu
Computer time = 4.81 seconds
Orbital eigenvalues (eV)
-41.85838 -39.96268 -39.20679 -37.67514 -36.00728 -34.81621 -32.59566 -32.36206
-30.24989 -29.83429 -29.19920 -28.23030 -27.25712 -25.74655 -24.35948 -23.11482
-22.28358 -21.39263 -20.52713 -20.03634 -19.81108 -18.82444 -18.18971 -16.86805
-16.70041 -16.13322 -16.05786 -15.92163 -15.60698 -15.49212 -14.86181 -14.65941
-14.26462 -14.08714 -13.95033 -13.83501 -13.54440 -13.41762 -13.10802 -12.63765
-12.41385 -12.37325 -12.21339 -12.05892 -11.80617 -11.46147 -11.13335 -11.11745
-10.94173 -10.84916 -10.57614 -10.26956 -10.09279 -9.96926 -9.90941 -9.88750
-9.70756 -9.14669 -8.64578 -8.51829 -7.82652 -6.88008 -5.75595 -3.09401
0.52509 1.25456 1.88658 2.44999 2.99848 3.13058 3.21145 3.36636
3.42106 3.44630 3.54430 4.32856 4.45002 4.54118 4.61296 4.67834
4.76024 4.85385 5.00707 5.01771 5.07912 5.10488 5.15883 5.22758
5.34885 5.49341 5.54592 5.60243 5.63020 5.81896 5.92198 5.95587
5.98702 6.06706 6.12693 6.27133 6.28660 6.36226 6.41943 6.47926
6.57929 6.62270 6.83860 7.01923 7.09862 7.37608 7.51926 7.58699
7.78836 8.01260 8.21543 9.17733 9.77996 10.43674 11.36137
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.013185 B = 0.002077 C = 0.001823
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2123.087768 B =13477.629983 C =15355.666411
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.317 6.317
3 C 0.155 3.845
4 C -0.226 4.226
5 C -0.019 4.019
6 C -0.151 4.151
7 C -0.097 4.097
8 C 0.012 3.988
9 C 0.581 3.419
10 O -0.526 6.526
11 N -0.721 5.721
12 C 0.132 3.868
13 C -0.119 4.119
14 H 0.079 0.921
15 C -0.134 4.134
16 C 0.177 3.823
17 N -0.606 5.606
18 C -0.230 4.230
19 H 0.078 0.922
20 C -0.009 4.009
21 N -0.921 5.921
22 Si 0.912 3.088
23 H -0.280 1.280
24 H -0.290 1.290
25 H -0.290 1.290
26 C 0.142 3.858
27 N -0.576 5.576
28 H 0.420 0.580
29 C 0.153 3.847
30 C -0.176 4.176
31 H 0.099 0.901
32 H 0.056 0.944
33 H 0.056 0.944
34 H 0.130 0.870
35 H 0.130 0.870
36 H 0.156 0.844
37 H 0.397 0.603
38 H 0.069 0.931
39 H 0.073 0.927
40 H 0.062 0.938
41 H 0.060 0.940
42 H 0.046 0.954
43 H 0.044 0.956
44 H 0.252 0.748
45 H 0.020 0.980
46 H 0.033 0.967
47 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -27.670 -0.452 -6.061 28.330
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.229 6.229
3 C 0.108 3.892
4 C -0.245 4.245
5 C -0.038 4.038
6 C -0.156 4.156
7 C -0.124 4.124
8 C -0.096 4.096
9 C 0.367 3.633
10 O -0.403 6.403
11 N -0.371 5.371
12 C 0.009 3.991
13 C -0.139 4.139
14 H 0.098 0.902
15 C -0.173 4.173
16 C 0.052 3.948
17 N -0.332 5.332
18 C -0.358 4.358
19 H 0.095 0.905
20 C -0.205 4.205
21 N -0.568 5.568
22 Si 0.743 3.257
23 H -0.205 1.205
24 H -0.217 1.217
25 H -0.217 1.217
26 C 0.016 3.984
27 N -0.182 5.182
28 H 0.259 0.741
29 C 0.042 3.958
30 C -0.198 4.198
31 H 0.118 0.882
32 H 0.075 0.925
33 H 0.075 0.925
34 H 0.148 0.852
35 H 0.148 0.852
36 H 0.174 0.826
37 H 0.231 0.769
38 H 0.088 0.912
39 H 0.091 0.909
40 H 0.081 0.919
41 H 0.079 0.921
42 H 0.065 0.935
43 H 0.062 0.938
44 H 0.062 0.938
45 H 0.038 0.962
46 H 0.052 0.948
47 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges -27.205 0.128 -6.000 27.859
hybrid contribution 0.679 -1.481 0.544 1.718
sum -26.526 -1.354 -5.456 27.115
Atomic orbital electron populations
1.23078 0.78135 1.03992 1.01491 1.86044 1.21527 1.26816 1.88562
1.18489 0.91191 0.84125 0.95369 1.20777 1.00036 0.92012 1.11682
1.20208 0.92091 0.97311 0.94189 1.18146 0.93469 0.92476 1.11473
1.20864 0.89404 0.99019 1.03075 1.20183 0.95466 0.81795 1.12198
1.17147 0.81962 0.87081 0.77079 1.90854 1.86636 1.12555 1.50213
1.45988 1.05964 1.10453 1.74709 1.21485 0.81422 0.93695 1.02461
1.22633 0.93600 0.97604 1.00041 0.90225 1.22858 0.94965 0.98851
1.00637 1.21148 0.90831 0.89393 0.93407 1.44490 0.99776 1.34853
1.54110 1.19089 0.90785 1.05589 1.20325 0.90458 1.24817 0.96025
0.99425 1.00243 1.69972 1.03017 1.39827 1.44020 0.86043 0.78941
0.81355 0.79399 1.20529 1.21736 1.21704 1.21582 0.87985 0.95938
0.92938 1.41965 1.06268 1.05888 1.64050 0.74126 1.17789 0.83403
0.94166 1.00467 1.18940 0.91620 0.95400 1.13866 0.88225 0.92488
0.92514 0.85197 0.85201 0.82620 0.76916 0.91227 0.90881 0.91904
0.92091 0.93532 0.93820 0.93760 0.96227 0.94844 0.85044
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.13 9.80 101.05 0.99 1.12 16
2 O -0.32 -2.78 10.48 -19.22 -0.20 -2.98 16
3 C 0.16 1.47 6.68 -39.13 -0.26 1.20 16
4 C -0.23 -1.81 8.95 -39.82 -0.36 -2.17 16
5 C -0.02 -0.17 10.05 -39.55 -0.40 -0.56 16
6 C -0.15 -1.61 6.16 -106.90 -0.66 -2.27 16
7 C -0.10 -1.10 10.53 -39.17 -0.41 -1.51 16
8 C 0.01 0.14 6.97 -82.26 -0.57 -0.43 16
9 C 0.58 7.85 7.79 -12.75 -0.10 7.75 16
10 O -0.53 -8.76 16.84 5.21 0.09 -8.67 16
11 N -0.72 -8.81 5.44 -61.54 -0.34 -9.15 16
12 C 0.13 1.82 5.12 -4.04 -0.02 1.80 16
13 C -0.12 -1.89 3.07 -88.47 -0.27 -2.16 16
14 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16
15 C -0.13 -2.37 6.42 -24.90 -0.16 -2.53 16
16 C 0.18 4.19 5.37 -3.06 -0.02 4.18 16
17 N -0.61 -15.11 3.40 -170.04 -0.58 -15.68 16
18 C -0.23 -6.32 10.28 -15.06 -0.15 -6.47 16
19 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16
20 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16
21 N -0.92 -26.85 10.31 55.49 0.57 -26.28 16
22 Si 0.91 21.94 29.55 -169.99 -5.02 16.91 16
23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16
24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16
25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16
26 C 0.14 2.76 6.56 -2.51 -0.02 2.74 16
27 N -0.58 -5.70 6.08 -7.35 -0.04 -5.74 16
28 H 0.42 3.18 8.12 -40.82 -0.33 2.85 16
29 C 0.15 1.63 7.25 -83.98 -0.61 1.02 16
30 C -0.18 -1.77 10.00 -39.27 -0.39 -2.16 16
31 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16
32 H 0.06 0.22 7.64 -51.93 -0.40 -0.18 16
33 H 0.06 0.21 7.64 -51.93 -0.40 -0.19 16
34 H 0.13 0.71 6.24 -52.49 -0.33 0.38 16
35 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16
36 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16
37 H 0.40 4.06 7.49 -40.82 -0.31 3.76 16
38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16
39 H 0.07 1.08 8.04 -51.93 -0.42 0.66 16
40 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16
41 H 0.06 1.02 8.04 -51.92 -0.42 0.60 16
42 H 0.05 1.22 7.38 -51.93 -0.38 0.84 16
43 H 0.04 1.16 7.50 -51.93 -0.39 0.77 16
44 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16
45 H 0.02 0.40 7.96 -51.93 -0.41 -0.02 16
46 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16
47 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16
LS Contribution 387.01 15.07 5.83 5.83
Total: -1.00 -33.88 387.01 -9.90 -43.78
By element:
Atomic # 1 Polarization: 9.47 SS G_CDS: -6.71 Total: 2.77 kcal
Atomic # 6 Polarization: 2.72 SS G_CDS: -3.50 Total: -0.79 kcal
Atomic # 7 Polarization: -56.47 SS G_CDS: -0.38 Total: -56.86 kcal
Atomic # 8 Polarization: -11.54 SS G_CDS: -0.11 Total: -11.65 kcal
Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal
Total LS contribution 5.83 Total: 5.83 kcal
Total: -33.88 -9.90 -43.78 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001028727317.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.168 kcal
(2) G-P(sol) polarization free energy of solvation -33.881 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.287 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.903 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.783 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.385 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 4.81 seconds