Wall clock time and date at job start Sat Apr 11 2020 06:56:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42909 * 1
3 3 C 1.35835 * 116.99707 * 2 1
4 4 C 1.39469 * 119.74379 * 0.02562 * 3 2 1
5 5 C 1.36300 * 120.55688 * 179.97438 * 4 3 2
6 6 C 1.40192 * 119.90902 * 0.02562 * 5 4 3
7 7 C 1.41514 * 133.26864 * 180.29162 * 6 5 4
8 8 C 1.35921 * 107.76243 * 180.02562 * 7 6 5
9 9 C 1.46916 * 125.44645 * 179.90229 * 8 7 6
10 10 O 1.21673 * 120.00147 * 359.69441 * 9 8 7
11 11 N 1.34777 * 120.00091 * 179.68957 * 9 8 7
12 12 C 1.46506 * 119.99873 * 179.97438 * 11 9 8
13 13 C 1.52999 * 109.46684 * 180.02562 * 12 11 9
14 14 H 1.09001 * 110.88651 * 54.30828 * 13 12 11
15 15 C 1.55159 * 111.00243 * 178.17902 * 13 12 11
16 16 C 1.54321 * 102.94482 * 153.57592 * 15 13 12
17 17 N 1.47027 * 107.27033 * 337.81421 * 16 15 13
18 18 C 1.36939 * 125.64861 * 178.97640 * 17 16 15
19 19 H 1.08002 * 119.99783 * 179.97438 * 18 17 16
20 20 C 1.38813 * 119.99816 * 359.96883 * 18 17 16
21 21 N 1.31611 * 120.00066 * 0.02562 * 20 18 17
22 22 Si 1.86802 * 119.99691 * 180.02562 * 20 18 17
23 23 H 1.48504 * 109.47028 * 0.02562 * 22 20 18
24 24 H 1.48508 * 109.46887 * 119.99732 * 22 20 18
25 25 H 1.48496 * 109.47219 * 239.99763 * 22 20 18
26 26 C 1.47466 * 108.72055 * 358.96947 * 17 16 15
27 27 N 1.38307 * 109.11117 * 359.63693 * 8 7 6
28 28 H 0.97000 * 125.63563 * 180.21001 * 27 8 7
29 29 C 1.37525 * 108.74624 * 0.23095 * 27 8 7
30 30 C 1.38221 * 119.73649 * 179.97438 * 3 2 1
31 31 H 1.09000 * 109.47046 * 179.97438 * 1 2 3
32 32 H 1.09000 * 109.46769 * 299.99895 * 1 2 3
33 33 H 1.09001 * 109.46852 * 59.99834 * 1 2 3
34 34 H 1.07998 * 119.72007 * 359.97438 * 4 3 2
35 35 H 1.08006 * 120.04499 * 179.97438 * 5 4 3
36 36 H 1.08000 * 126.11952 * 359.96423 * 7 6 5
37 37 H 0.96995 * 120.00018 * 0.27786 * 11 9 8
38 38 H 1.09000 * 109.47212 * 300.00355 * 12 11 9
39 39 H 1.09001 * 109.46577 * 60.00430 * 12 11 9
40 40 H 1.08996 * 110.72387 * 271.94185 * 15 13 12
41 41 H 1.09010 * 110.71915 * 35.04170 * 15 13 12
42 42 H 1.09000 * 109.88199 * 97.22658 * 16 15 13
43 43 H 1.08995 * 109.88583 * 218.24066 * 16 15 13
44 44 H 0.97004 * 119.99616 * 180.02562 * 21 20 18
45 45 H 1.09007 * 110.35181 * 265.25221 * 26 17 16
46 46 H 1.09003 * 110.40292 * 142.92025 * 26 17 16
47 47 H 1.07997 * 120.11358 * 359.97438 * 30 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0457 1.2103 0.0000
4 6 1.2808 2.3766 0.0005
5 6 1.8822 3.5997 0.0011
6 6 3.2812 3.6908 0.0005
7 6 4.1822 4.7820 0.0061
8 6 5.4443 4.2777 0.0017
9 6 6.6797 5.0730 0.0031
10 8 6.6208 6.2883 0.0029
11 7 7.8781 4.4563 0.0046
12 6 9.1099 5.2494 0.0054
13 6 10.3195 4.3126 0.0064
14 1 10.2636 3.6047 -0.8206
15 6 11.6457 5.1166 -0.0387
16 6 12.6524 4.1613 0.6362
17 7 11.8783 3.2285 1.4684
18 6 12.3988 2.2079 2.2185
19 1 11.7431 1.5754 2.7986
20 6 13.7690 1.9862 2.2331
21 7 14.5680 2.7572 1.5265
22 14 14.4788 0.5934 3.2558
23 1 13.3782 -0.1204 3.9518
24 1 15.1998 -0.3545 2.3686
25 1 15.4227 1.1475 4.2594
26 6 10.4486 3.5738 1.3618
27 7 5.3799 2.8961 0.0017
28 1 6.1411 2.2949 0.0019
29 6 4.0585 2.5153 0.0010
30 6 3.4263 1.2764 0.0005
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3633 0.5138 0.8900
33 1 -0.3633 0.5139 -0.8900
34 1 0.2029 2.3099 0.0005
35 1 1.2819 4.4975 0.0011
36 1 3.9147 5.8284 0.0118
37 1 7.9250 3.4875 0.0007
38 1 9.1381 5.8777 -0.8849
39 1 9.1363 5.8785 0.8951
40 1 11.9384 5.3203 -1.0687
41 1 11.5533 6.0449 0.5253
42 1 13.2056 3.6089 -0.1233
43 1 13.3437 4.7301 1.2579
44 1 15.5255 2.6020 1.5365
45 1 10.1551 4.2302 2.1811
46 1 9.8386 2.6705 1.3612
47 1 4.0122 0.3691 0.0014
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001028727317.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:56:01
Heat of formation + Delta-G solvation = -11.982512 kcal
Electronic energy + Delta-G solvation = -28476.916906 eV
Core-core repulsion = 24432.173483 eV
Total energy + Delta-G solvation = -4044.743424 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.168 amu
Computer time = 3.12 seconds
Orbital eigenvalues (eV)
-42.63025 -40.81634 -40.07963 -39.20466 -36.69545 -36.15386 -34.36341 -33.10392
-31.79507 -30.70842 -30.29413 -29.49918 -27.81084 -27.32018 -25.75924 -24.23192
-23.06387 -22.25238 -21.90162 -21.52625 -20.96387 -19.62704 -19.09439 -18.69911
-17.56758 -17.12660 -16.72039 -16.69202 -16.62725 -16.54198 -16.36128 -16.02966
-15.51698 -15.25188 -14.86277 -14.69540 -14.55621 -14.53413 -14.08082 -13.99137
-13.84281 -13.46121 -13.21227 -13.07331 -12.89438 -12.78625 -12.77011 -12.67900
-12.00740 -11.97102 -11.88230 -11.72810 -11.72179 -11.57795 -11.48465 -11.27275
-10.72959 -10.68069 -10.22236 -9.22589 -8.91211 -8.57376 -7.86758 -5.22157
-0.25481 0.56282 1.04261 1.44684 1.45468 1.55639 1.72619 2.00858
2.25875 2.47746 2.54262 2.83693 3.31613 3.56405 3.62514 3.70663
3.82482 3.99475 4.01435 4.04051 4.07298 4.29067 4.37639 4.41332
4.47526 4.48000 4.51764 4.61096 4.68526 4.76743 4.79063 4.84642
4.89016 4.93149 5.02068 5.07327 5.20363 5.26913 5.36626 5.42309
5.44471 5.45235 5.60781 5.67180 5.77444 5.86378 6.18872 6.29266
6.45017 6.48772 6.99760 7.09126 7.76674 8.40706 9.23814
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.013185 B = 0.002077 C = 0.001823
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2123.087768 B =13477.629983 C =15355.666411
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.017 3.983
2 O -0.334 6.334
3 C 0.154 3.846
4 C -0.223 4.223
5 C -0.019 4.019
6 C -0.171 4.171
7 C -0.098 4.098
8 C -0.005 4.005
9 C 0.586 3.414
10 O -0.562 6.562
11 N -0.713 5.713
12 C 0.144 3.856
13 C -0.096 4.096
14 H 0.091 0.909
15 C -0.122 4.122
16 C 0.182 3.818
17 N -0.629 5.629
18 C -0.240 4.240
19 H 0.083 0.917
20 C -0.069 4.069
21 N -0.951 5.951
22 Si 0.978 3.022
23 H -0.265 1.265
24 H -0.292 1.292
25 H -0.294 1.294
26 C 0.137 3.863
27 N -0.570 5.570
28 H 0.429 0.571
29 C 0.145 3.855
30 C -0.197 4.197
31 H 0.116 0.884
32 H 0.068 0.932
33 H 0.069 0.931
34 H 0.159 0.841
35 H 0.155 0.845
36 H 0.161 0.839
37 H 0.408 0.592
38 H 0.081 0.919
39 H 0.065 0.935
40 H 0.087 0.913
41 H 0.072 0.928
42 H 0.013 0.987
43 H 0.004 0.996
44 H 0.246 0.754
45 H 0.018 0.982
46 H 0.048 0.952
47 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -30.632 -1.127 -6.350 31.303
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 O -0.248 6.248
3 C 0.106 3.894
4 C -0.242 4.242
5 C -0.037 4.037
6 C -0.175 4.175
7 C -0.125 4.125
8 C -0.113 4.113
9 C 0.373 3.627
10 O -0.441 6.441
11 N -0.363 5.363
12 C 0.020 3.980
13 C -0.116 4.116
14 H 0.109 0.891
15 C -0.161 4.161
16 C 0.057 3.943
17 N -0.355 5.355
18 C -0.369 4.369
19 H 0.101 0.899
20 C -0.262 4.262
21 N -0.600 5.600
22 Si 0.806 3.194
23 H -0.189 1.189
24 H -0.219 1.219
25 H -0.221 1.221
26 C 0.012 3.988
27 N -0.176 5.176
28 H 0.269 0.731
29 C 0.033 3.967
30 C -0.219 4.219
31 H 0.134 0.866
32 H 0.087 0.913
33 H 0.087 0.913
34 H 0.176 0.824
35 H 0.173 0.827
36 H 0.179 0.821
37 H 0.244 0.756
38 H 0.100 0.900
39 H 0.083 0.917
40 H 0.105 0.895
41 H 0.091 0.909
42 H 0.031 0.969
43 H 0.022 0.978
44 H 0.055 0.945
45 H 0.036 0.964
46 H 0.066 0.934
47 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges -30.204 -0.582 -6.289 30.858
hybrid contribution 1.437 -1.339 0.654 2.070
sum -28.767 -1.922 -5.635 29.377
Atomic orbital electron populations
1.23393 0.76034 1.05604 1.02647 1.86030 1.23771 1.26682 1.88279
1.18716 0.91261 0.84963 0.94417 1.21090 1.01448 0.91196 1.10477
1.20546 0.91464 0.98628 0.93095 1.18385 0.94550 0.92118 1.12473
1.21054 0.89572 0.99569 1.02294 1.19924 0.94820 0.82473 1.14104
1.17282 0.82475 0.86707 0.76222 1.90831 1.87151 1.14050 1.52064
1.45842 1.05286 1.10955 1.74246 1.21264 0.80901 0.93088 1.02714
1.22429 0.93599 0.97366 0.98176 0.89109 1.22718 0.94036 0.97865
1.01453 1.20922 0.91805 0.89524 0.92049 1.44815 1.02305 1.34513
1.53863 1.19493 0.91196 1.06063 1.20192 0.89915 1.25670 0.96602
1.02066 1.01881 1.70194 1.02739 1.41493 1.45623 0.85015 0.78186
0.78476 0.77681 1.18920 1.21855 1.22136 1.21778 0.85256 0.96929
0.94865 1.41873 1.06565 1.05331 1.63826 0.73137 1.17970 0.83613
0.94542 1.00543 1.19088 0.92339 0.95367 1.15075 0.86589 0.91338
0.91250 0.82367 0.82690 0.82145 0.75648 0.90047 0.91670 0.89490
0.90908 0.96902 0.97801 0.94451 0.96374 0.93406 0.84721
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.12 9.80 113.37 1.11 1.23 16
2 O -0.33 -5.26 10.48 -91.70 -0.96 -6.22 16
3 C 0.15 2.64 6.68 22.56 0.15 2.79 16
4 C -0.22 -2.99 8.95 22.11 0.20 -2.79 16
5 C -0.02 -0.28 10.05 22.29 0.22 -0.06 16
6 C -0.17 -3.42 6.16 -21.34 -0.13 -3.55 16
7 C -0.10 -2.13 10.53 22.54 0.24 -1.89 16
8 C 0.00 -0.11 6.97 39.86 0.28 0.17 16
9 C 0.59 15.22 7.79 86.52 0.67 15.90 16
10 O -0.56 -18.33 16.84 -4.26 -0.07 -18.40 16
11 N -0.71 -16.24 5.44 -466.84 -2.54 -18.78 16
12 C 0.14 3.66 5.12 86.38 0.44 4.10 16
13 C -0.10 -2.87 3.07 -9.40 -0.03 -2.90 16
14 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16
15 C -0.12 -4.18 6.42 31.78 0.20 -3.97 16
16 C 0.18 8.85 5.37 86.73 0.47 9.32 16
17 N -0.63 -31.63 3.40 -691.88 -2.35 -33.97 16
18 C -0.24 -13.34 10.28 84.03 0.86 -12.48 16
19 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16
20 C -0.07 -3.95 5.49 84.86 0.47 -3.48 16
21 N -0.95 -57.39 10.31 21.65 0.22 -57.17 16
22 Si 0.98 45.72 29.55 68.60 2.03 47.75 16
23 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16
24 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16
25 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16
26 C 0.14 5.17 6.56 86.84 0.57 5.74 16
27 N -0.57 -10.75 6.08 -177.18 -1.08 -11.83 16
28 H 0.43 6.06 8.12 -92.71 -0.75 5.30 16
29 C 0.15 2.95 7.25 39.11 0.28 3.24 16
30 C -0.20 -3.76 10.00 22.47 0.22 -3.53 16
31 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16
32 H 0.07 0.31 7.64 -2.39 -0.02 0.29 16
33 H 0.07 0.30 7.64 -2.39 -0.02 0.28 16
34 H 0.16 1.13 6.24 -2.91 -0.02 1.12 16
35 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16
36 H 0.16 3.18 8.06 -2.91 -0.02 3.16 16
37 H 0.41 7.56 7.49 -92.71 -0.69 6.87 16
38 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16
39 H 0.06 1.82 8.04 -2.39 -0.02 1.80 16
40 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16
41 H 0.07 2.34 8.04 -2.38 -0.02 2.32 16
42 H 0.01 0.70 7.38 -2.39 -0.02 0.68 16
43 H 0.00 0.21 7.50 -2.39 -0.02 0.19 16
44 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16
45 H 0.02 0.71 7.96 -2.38 -0.02 0.69 16
46 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16
47 H 0.13 2.34 8.06 -2.91 -0.02 2.31 16
Total: -1.00 -75.22 387.01 1.05 -74.17
By element:
Atomic # 1 Polarization: 17.07 SS G_CDS: -0.43 Total: 16.63 kcal
Atomic # 6 Polarization: 1.59 SS G_CDS: 6.23 Total: 7.83 kcal
Atomic # 7 Polarization: -116.01 SS G_CDS: -5.75 Total: -121.75 kcal
Atomic # 8 Polarization: -23.59 SS G_CDS: -1.03 Total: -24.63 kcal
Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal
Total: -75.22 1.05 -74.17 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001028727317.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.187 kcal
(2) G-P(sol) polarization free energy of solvation -75.216 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.029 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.047 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.169 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.983 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 3.13 seconds