Wall clock time and date at job start Sat Apr 11 2020 06:57:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13605 * 1
3 3 C 1.43201 * 179.97438 * 2 1
4 4 C 1.38185 * 126.45217 * 123.59322 * 3 2 1
5 5 N 1.34425 * 108.38242 * 179.97438 * 4 3 2
6 6 H 0.96999 * 125.40304 * 180.02562 * 5 4 3
7 7 C 1.37743 * 109.18901 * 0.02562 * 5 4 3
8 8 C 1.46792 * 125.84979 * 179.97438 * 7 5 4
9 9 O 1.21683 * 120.00251 * 199.18189 * 8 7 5
10 10 N 1.34786 * 120.00031 * 19.18262 * 8 7 5
11 11 C 1.47080 * 120.88176 * 185.96064 * 10 8 7
12 12 C 1.53241 * 108.51997 * 231.20737 * 11 10 8
13 13 N 1.46907 * 109.33601 * 306.16852 * 12 11 10
14 14 C 1.46899 * 110.99717 * 187.25317 * 13 12 11
15 15 H 1.09007 * 110.88741 * 303.88119 * 14 13 12
16 16 C 1.55160 * 111.00379 * 180.02562 * 14 13 12
17 17 C 1.54321 * 102.93917 * 206.42553 * 16 14 13
18 18 N 1.47026 * 107.27380 * 22.18931 * 17 16 14
19 19 C 1.36941 * 125.64520 * 181.02077 * 18 17 16
20 20 H 1.08001 * 119.99758 * 175.37681 * 19 18 17
21 21 C 1.38809 * 120.00250 * 355.38089 * 19 18 17
22 22 N 1.31621 * 119.99947 * 159.09326 * 21 19 18
23 23 Si 1.86795 * 120.00207 * 339.09548 * 21 19 18
24 24 H 1.48502 * 109.47202 * 65.65103 * 23 21 19
25 25 H 1.48502 * 109.47169 * 305.65193 * 23 21 19
26 26 H 1.48503 * 109.47292 * 185.64902 * 23 21 19
27 27 C 1.47419 * 108.70028 * 1.28945 * 18 17 16
28 28 C 1.46895 * 111.26666 * 63.10884 * 13 12 11
29 29 C 1.47076 * 120.87907 * 5.98181 * 10 8 7
30 30 C 1.36406 * 108.30361 * 0.26312 * 7 5 4
31 31 H 1.08003 * 125.81026 * 359.97438 * 4 3 2
32 32 H 1.08998 * 109.62763 * 111.49770 * 11 10 8
33 33 H 1.08995 * 109.62925 * 350.91262 * 11 10 8
34 34 H 1.08991 * 109.49425 * 186.21390 * 12 11 10
35 35 H 1.08994 * 109.51606 * 66.13902 * 12 11 10
36 36 H 1.08994 * 110.71853 * 88.06139 * 16 14 13
37 37 H 1.08996 * 110.71473 * 324.78621 * 16 14 13
38 38 H 1.09007 * 109.88212 * 262.77187 * 17 16 14
39 39 H 1.08999 * 109.88137 * 141.61163 * 17 16 14
40 40 H 0.96996 * 119.99938 * 5.01892 * 22 21 19
41 41 H 1.08997 * 110.36950 * 94.48706 * 27 18 17
42 42 H 1.09006 * 110.36226 * 216.80416 * 27 18 17
43 43 H 1.08999 * 109.49995 * 56.85159 * 28 13 12
44 44 H 1.08997 * 109.49299 * 176.93426 * 28 13 12
45 45 H 1.09000 * 109.62682 * 248.50509 * 29 10 8
46 46 H 1.09002 * 109.62620 * 9.08048 * 29 10 8
47 47 H 1.08001 * 126.48331 * 179.70881 * 30 7 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.5681 0.0006 0.0000
4 6 3.3888 0.6160 -0.9259
5 7 4.6669 0.3863 -0.5782
6 1 5.4462 0.7065 -1.0589
7 6 4.6941 -0.3758 0.5688
8 6 5.9007 -0.8380 1.2654
9 8 5.8342 -1.7710 2.0438
10 7 7.0824 -0.2291 1.0428
11 6 8.3249 -0.7555 1.6278
12 6 9.0470 0.3886 2.3475
13 7 9.2253 1.5123 1.4181
14 6 10.0632 2.5610 2.0147
15 1 9.6450 2.9004 2.9624
16 6 10.2510 3.7482 1.0334
17 6 11.5997 4.3530 1.4770
18 7 12.3353 3.3010 2.1939
19 6 13.5715 3.4402 2.7663
20 1 13.9970 2.6277 3.3366
21 6 14.2777 4.6254 2.6136
22 7 15.2368 4.9338 3.4605
23 14 13.8668 5.7828 1.2061
24 1 12.4983 6.3271 1.3963
25 1 13.9305 5.0415 -0.0791
26 1 14.8449 6.9000 1.1822
27 6 11.5243 2.0700 2.1888
28 6 7.9312 2.0555 0.9844
29 6 7.1634 0.9797 0.2090
30 6 3.4078 -0.6329 0.9430
31 1 3.0595 1.1847 -1.7830
32 1 8.9627 -1.1513 0.8375
33 1 8.0881 -1.5450 2.3410
34 1 10.0217 0.0437 2.6923
35 1 8.4531 0.7138 3.2016
36 1 9.4463 4.4743 1.1481
37 1 10.3075 3.3927 0.0046
38 1 11.4257 5.2010 2.1395
39 1 12.1677 4.6730 0.6034
40 1 15.4995 4.3010 4.1471
41 1 11.8133 1.4287 1.3561
42 1 11.6354 1.5387 3.1341
43 1 7.3524 2.3574 1.8574
44 1 8.0967 2.9194 0.3408
45 1 7.6895 0.7507 -0.7178
46 1 6.1585 1.3374 -0.0160
47 1 3.0912 -1.2095 1.7995
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001046018358.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:57:39
Heat of formation + Delta-G solvation = 118.167260 kcal
Electronic energy + Delta-G solvation = -29551.977951 eV
Core-core repulsion = 25545.170996 eV
Total energy + Delta-G solvation = -4006.806955 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 1.18 seconds
Orbital eigenvalues (eV)
-42.36239 -40.18477 -38.80223 -37.13689 -36.76711 -34.69096 -32.60248 -32.17782
-31.56048 -30.31058 -29.60806 -28.56745 -26.59059 -24.70525 -23.72400 -23.25195
-23.04708 -21.17332 -20.79839 -20.60153 -19.91302 -18.66904 -17.50706 -17.28860
-16.71410 -16.21686 -16.12263 -15.81351 -15.45073 -15.19416 -14.89165 -14.55531
-14.42979 -14.19975 -13.94900 -13.78958 -13.61589 -13.42805 -13.35872 -13.18162
-12.90321 -12.61696 -12.47181 -12.40405 -12.34238 -11.92014 -11.67527 -11.44961
-11.15293 -11.06734 -10.76482 -10.54096 -10.39680 -10.06161 -9.69849 -9.52173
-9.26905 -9.01952 -8.92951 -8.60553 -8.45160 -7.11657 -6.34751 -3.22085
0.84698 1.26732 2.17185 2.36993 2.46407 2.77935 3.23935 3.36304
3.46309 3.59169 3.64834 3.69060 4.00660 4.28215 4.30756 4.48736
4.57479 4.57698 4.69351 4.78491 4.85640 4.99577 5.02136 5.07368
5.19259 5.27526 5.29427 5.34379 5.40381 5.43816 5.49755 5.58230
5.70401 5.78401 5.81310 5.93521 6.02397 6.06566 6.09173 6.31719
6.41813 6.46796 6.50251 6.71295 6.85715 6.89178 7.06352 7.25104
7.62922 7.63967 8.29758 9.01420 9.54668 10.19903 11.15866
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.024678 B = 0.002141 C = 0.002017
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1134.325197 B =13076.130275 C =13879.878543
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.434 5.434
2 C 0.289 3.711
3 C -0.132 4.132
4 C 0.092 3.908
5 N -0.528 5.528
6 H 0.431 0.569
7 C -0.044 4.044
8 C 0.589 3.411
9 O -0.524 6.524
10 N -0.611 5.611
11 C 0.119 3.881
12 C 0.040 3.960
13 N -0.526 5.526
14 C 0.067 3.933
15 H 0.053 0.947
16 C -0.121 4.121
17 C 0.115 3.885
18 N -0.612 5.612
19 C -0.326 4.326
20 H 0.078 0.922
21 C -0.025 4.025
22 N -0.925 5.925
23 Si 1.070 2.930
24 H -0.283 1.283
25 H -0.299 1.299
26 H -0.301 1.301
27 C 0.150 3.850
28 C 0.040 3.960
29 C 0.091 3.909
30 C -0.057 4.057
31 H 0.190 0.810
32 H 0.080 0.920
33 H 0.099 0.901
34 H 0.095 0.905
35 H 0.040 0.960
36 H 0.064 0.936
37 H 0.076 0.924
38 H 0.046 0.954
39 H 0.029 0.971
40 H 0.261 0.739
41 H 0.034 0.966
42 H 0.040 0.960
43 H 0.040 0.960
44 H 0.094 0.906
45 H 0.085 0.915
46 H 0.088 0.912
47 H 0.160 0.840
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.938 -8.555 -11.119 26.040
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.110 5.110
2 C -0.026 4.026
3 C -0.143 4.143
4 C -0.052 4.052
5 N -0.129 5.129
6 H 0.277 0.723
7 C -0.155 4.155
8 C 0.378 3.622
9 O -0.399 6.399
10 N -0.345 5.345
11 C -0.003 4.003
12 C -0.089 4.089
13 N -0.251 5.251
14 C -0.041 4.041
15 H 0.071 0.929
16 C -0.159 4.159
17 C -0.011 4.011
18 N -0.340 5.340
19 C -0.453 4.453
20 H 0.096 0.904
21 C -0.224 4.224
22 N -0.566 5.566
23 Si 0.904 3.096
24 H -0.211 1.211
25 H -0.227 1.227
26 H -0.229 1.229
27 C 0.023 3.977
28 C -0.089 4.089
29 C -0.033 4.033
30 C -0.084 4.084
31 H 0.207 0.793
32 H 0.099 0.901
33 H 0.117 0.883
34 H 0.113 0.887
35 H 0.058 0.942
36 H 0.083 0.917
37 H 0.094 0.906
38 H 0.064 0.936
39 H 0.046 0.954
40 H 0.071 0.929
41 H 0.052 0.948
42 H 0.059 0.941
43 H 0.058 0.942
44 H 0.112 0.888
45 H 0.104 0.896
46 H 0.105 0.895
47 H 0.178 0.822
Dipole moment (debyes) X Y Z Total
from point charges -22.787 -7.751 -11.734 26.777
hybrid contribution 0.083 -0.970 1.016 1.407
sum -22.704 -8.721 -10.718 26.578
Atomic orbital electron populations
1.81297 1.11809 1.09620 1.08254 1.24638 0.91424 0.93075 0.93459
1.15402 0.85086 1.11755 1.02018 1.22389 0.82566 1.00514 0.99756
1.42792 1.08456 1.40018 1.21678 0.72256 1.20014 0.95471 1.06546
0.93471 1.17063 0.81296 0.82399 0.81464 1.90871 1.84569 1.28612
1.35870 1.48095 1.07368 1.28010 1.51009 1.21820 0.83314 0.96421
0.98696 1.22506 1.01190 0.91605 0.93596 1.61957 1.13432 1.09150
1.40562 1.22946 0.94533 0.90867 0.95772 0.92880 1.22660 0.97730
0.96183 0.99373 1.21946 0.90803 0.93209 0.95098 1.44778 1.17757
1.06063 1.65410 1.20103 0.92824 1.03324 1.29061 0.90407 1.25784
0.97076 0.97365 1.02210 1.70931 1.33987 1.34766 1.16956 0.83855
0.74617 0.75631 0.75456 1.21073 1.22722 1.22948 1.21495 0.87356
0.90082 0.98730 1.22433 0.90211 0.96786 0.99473 1.22375 1.00635
0.85209 0.95056 1.21062 0.89174 0.98946 0.99252 0.79340 0.90126
0.88280 0.88668 0.94220 0.91722 0.90552 0.93609 0.95397 0.92865
0.94816 0.94131 0.94152 0.88774 0.89647 0.89467 0.82217
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.43 -4.79 18.54 41.84 0.78 -4.01 16
2 C 0.29 2.43 15.83 -22.47 -0.36 2.08 16
3 C -0.13 -0.81 5.97 -106.84 -0.64 -1.45 16
4 C 0.09 0.28 11.90 -16.44 -0.20 0.08 16
5 N -0.53 -1.79 4.76 -9.27 -0.04 -1.83 16
6 H 0.43 0.46 5.90 -40.82 -0.24 0.22 16
7 C -0.04 -0.31 6.45 -82.41 -0.53 -0.84 16
8 C 0.59 5.63 7.65 -12.80 -0.10 5.53 16
9 O -0.52 -6.88 16.37 5.20 0.09 -6.79 16
10 N -0.61 -5.00 3.01 -173.96 -0.52 -5.52 16
11 C 0.12 1.08 6.61 -3.60 -0.02 1.06 16
12 C 0.04 0.41 5.52 -3.70 -0.02 0.39 16
13 N -0.53 -5.81 4.53 -223.64 -1.01 -6.83 16
14 C 0.07 0.98 2.73 -65.45 -0.18 0.80 16
15 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16
16 C -0.12 -1.79 5.03 -24.90 -0.13 -1.91 16
17 C 0.11 2.36 4.57 -3.06 -0.01 2.35 16
18 N -0.61 -14.47 3.35 -169.93 -0.57 -15.04 16
19 C -0.33 -9.17 10.52 -15.06 -0.16 -9.33 16
20 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16
21 C -0.02 -0.72 5.48 -17.43 -0.10 -0.81 16
22 N -0.92 -28.75 13.70 55.49 0.76 -27.99 16
23 Si 1.07 26.14 24.58 -169.99 -4.18 21.96 16
24 H -0.28 -6.23 5.24 56.52 0.30 -5.93 16
25 H -0.30 -7.04 6.96 56.52 0.39 -6.65 16
26 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16
27 C 0.15 2.81 5.96 -2.42 -0.01 2.79 16
28 C 0.04 0.32 5.43 -3.70 -0.02 0.30 16
29 C 0.09 0.51 5.43 -3.60 -0.02 0.49 16
30 C -0.06 -0.42 10.59 -39.09 -0.41 -0.83 16
31 H 0.19 -0.10 8.06 -52.48 -0.42 -0.53 16
32 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16
33 H 0.10 0.97 7.04 -51.93 -0.37 0.60 16
34 H 0.10 1.04 7.05 -51.93 -0.37 0.67 16
35 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16
36 H 0.06 0.80 7.96 -51.93 -0.41 0.38 16
37 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16
38 H 0.05 1.00 6.58 -51.92 -0.34 0.66 16
39 H 0.03 0.61 4.26 -51.93 -0.22 0.39 16
40 H 0.26 8.03 8.73 -40.82 -0.36 7.68 16
41 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16
42 H 0.04 0.77 7.87 -51.93 -0.41 0.36 16
43 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16
44 H 0.09 0.68 6.64 -51.93 -0.34 0.33 16
45 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16
46 H 0.09 0.28 4.05 -51.93 -0.21 0.07 16
47 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16
LS Contribution 371.03 15.07 5.59 5.59
Total: -1.00 -36.17 371.03 -8.42 -44.59
By element:
Atomic # 1 Polarization: 1.56 SS G_CDS: -6.40 Total: -4.84 kcal
Atomic # 6 Polarization: 3.61 SS G_CDS: -2.90 Total: 0.71 kcal
Atomic # 7 Polarization: -60.60 SS G_CDS: -0.61 Total: -61.21 kcal
Atomic # 8 Polarization: -6.88 SS G_CDS: 0.09 Total: -6.79 kcal
Atomic # 14 Polarization: 26.14 SS G_CDS: -4.18 Total: 21.96 kcal
Total LS contribution 5.59 Total: 5.59 kcal
Total: -36.17 -8.42 -44.59 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001046018358.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 162.757 kcal
(2) G-P(sol) polarization free energy of solvation -36.168 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.589 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.590 kcal
(6) G-S(sol) free energy of system = (1) + (5) 118.167 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.19 seconds