Wall clock time and date at job start Sat Apr 11 2020 06:57:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13605 * 1
3 3 C 1.43201 * 179.97438 * 2 1
4 4 C 1.38185 * 126.45217 * 123.59322 * 3 2 1
5 5 N 1.34425 * 108.38242 * 179.97438 * 4 3 2
6 6 H 0.96999 * 125.40304 * 180.02562 * 5 4 3
7 7 C 1.37743 * 109.18901 * 0.02562 * 5 4 3
8 8 C 1.46792 * 125.84979 * 179.97438 * 7 5 4
9 9 O 1.21683 * 120.00251 * 199.18189 * 8 7 5
10 10 N 1.34786 * 120.00031 * 19.18262 * 8 7 5
11 11 C 1.47080 * 120.88176 * 185.96064 * 10 8 7
12 12 C 1.53241 * 108.51997 * 231.20737 * 11 10 8
13 13 N 1.46907 * 109.33601 * 306.16852 * 12 11 10
14 14 C 1.46899 * 110.99717 * 187.25317 * 13 12 11
15 15 H 1.09007 * 110.88741 * 303.88119 * 14 13 12
16 16 C 1.55160 * 111.00379 * 180.02562 * 14 13 12
17 17 C 1.54321 * 102.93917 * 206.42553 * 16 14 13
18 18 N 1.47026 * 107.27380 * 22.18931 * 17 16 14
19 19 C 1.36941 * 125.64520 * 181.02077 * 18 17 16
20 20 H 1.08001 * 119.99758 * 175.37681 * 19 18 17
21 21 C 1.38809 * 120.00250 * 355.38089 * 19 18 17
22 22 N 1.31621 * 119.99947 * 159.09326 * 21 19 18
23 23 Si 1.86795 * 120.00207 * 339.09548 * 21 19 18
24 24 H 1.48502 * 109.47202 * 65.65103 * 23 21 19
25 25 H 1.48502 * 109.47169 * 305.65193 * 23 21 19
26 26 H 1.48503 * 109.47292 * 185.64902 * 23 21 19
27 27 C 1.47419 * 108.70028 * 1.28945 * 18 17 16
28 28 C 1.46895 * 111.26666 * 63.10884 * 13 12 11
29 29 C 1.47076 * 120.87907 * 5.98181 * 10 8 7
30 30 C 1.36406 * 108.30361 * 0.26312 * 7 5 4
31 31 H 1.08003 * 125.81026 * 359.97438 * 4 3 2
32 32 H 1.08998 * 109.62763 * 111.49770 * 11 10 8
33 33 H 1.08995 * 109.62925 * 350.91262 * 11 10 8
34 34 H 1.08991 * 109.49425 * 186.21390 * 12 11 10
35 35 H 1.08994 * 109.51606 * 66.13902 * 12 11 10
36 36 H 1.08994 * 110.71853 * 88.06139 * 16 14 13
37 37 H 1.08996 * 110.71473 * 324.78621 * 16 14 13
38 38 H 1.09007 * 109.88212 * 262.77187 * 17 16 14
39 39 H 1.08999 * 109.88137 * 141.61163 * 17 16 14
40 40 H 0.96996 * 119.99938 * 5.01892 * 22 21 19
41 41 H 1.08997 * 110.36950 * 94.48706 * 27 18 17
42 42 H 1.09006 * 110.36226 * 216.80416 * 27 18 17
43 43 H 1.08999 * 109.49995 * 56.85159 * 28 13 12
44 44 H 1.08997 * 109.49299 * 176.93426 * 28 13 12
45 45 H 1.09000 * 109.62682 * 248.50509 * 29 10 8
46 46 H 1.09002 * 109.62620 * 9.08048 * 29 10 8
47 47 H 1.08001 * 126.48331 * 179.70881 * 30 7 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.5681 0.0006 0.0000
4 6 3.3888 0.6160 -0.9259
5 7 4.6669 0.3863 -0.5782
6 1 5.4462 0.7065 -1.0589
7 6 4.6941 -0.3758 0.5688
8 6 5.9007 -0.8380 1.2654
9 8 5.8342 -1.7710 2.0438
10 7 7.0824 -0.2291 1.0428
11 6 8.3249 -0.7555 1.6278
12 6 9.0470 0.3886 2.3475
13 7 9.2253 1.5123 1.4181
14 6 10.0632 2.5610 2.0147
15 1 9.6450 2.9004 2.9624
16 6 10.2510 3.7482 1.0334
17 6 11.5997 4.3530 1.4770
18 7 12.3353 3.3010 2.1939
19 6 13.5715 3.4402 2.7663
20 1 13.9970 2.6277 3.3366
21 6 14.2777 4.6254 2.6136
22 7 15.2368 4.9338 3.4605
23 14 13.8668 5.7828 1.2061
24 1 12.4983 6.3271 1.3963
25 1 13.9305 5.0415 -0.0791
26 1 14.8449 6.9000 1.1822
27 6 11.5243 2.0700 2.1888
28 6 7.9312 2.0555 0.9844
29 6 7.1634 0.9797 0.2090
30 6 3.4078 -0.6329 0.9430
31 1 3.0595 1.1847 -1.7830
32 1 8.9627 -1.1513 0.8375
33 1 8.0881 -1.5450 2.3410
34 1 10.0217 0.0437 2.6923
35 1 8.4531 0.7138 3.2016
36 1 9.4463 4.4743 1.1481
37 1 10.3075 3.3927 0.0046
38 1 11.4257 5.2010 2.1395
39 1 12.1677 4.6730 0.6034
40 1 15.4995 4.3010 4.1471
41 1 11.8133 1.4287 1.3561
42 1 11.6354 1.5387 3.1341
43 1 7.3524 2.3574 1.8574
44 1 8.0967 2.9194 0.3408
45 1 7.6895 0.7507 -0.7178
46 1 6.1585 1.3374 -0.0160
47 1 3.0912 -1.2095 1.7995
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001046018358.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:57:36
Heat of formation + Delta-G solvation = 90.762801 kcal
Electronic energy + Delta-G solvation = -29553.166297 eV
Core-core repulsion = 25545.170996 eV
Total energy + Delta-G solvation = -4007.995301 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 7.82 seconds
Orbital eigenvalues (eV)
-42.81985 -40.93231 -39.86288 -38.27307 -37.45124 -35.78956 -34.25328 -33.01430
-32.17121 -31.23377 -30.82236 -29.76396 -27.66654 -25.71315 -24.97865 -23.98206
-23.69126 -22.30259 -21.83032 -21.40387 -20.98514 -19.56700 -19.27673 -17.85973
-17.47896 -17.12804 -16.86438 -16.80477 -16.63278 -16.01641 -15.63108 -15.53490
-15.39495 -15.13323 -14.90867 -14.79498 -14.55356 -14.41417 -14.32084 -14.09361
-13.96502 -13.80703 -13.59622 -13.34287 -13.00941 -12.97973 -12.93209 -12.63068
-12.31714 -12.30590 -12.13803 -11.70679 -11.62181 -11.48259 -11.21996 -10.93458
-10.59343 -10.17754 -9.95337 -9.43527 -9.29357 -9.12947 -8.64531 -5.43115
0.39485 0.76121 1.42116 1.54007 1.63077 1.74978 1.84317 1.90310
2.18953 2.56935 2.66886 2.69202 3.11434 3.14869 3.41588 3.48903
3.58808 3.78870 3.88709 4.00605 4.05646 4.15086 4.17819 4.19555
4.25785 4.34383 4.38510 4.41521 4.54769 4.63148 4.69522 4.74875
4.83320 4.85261 4.91018 4.93533 4.95760 5.02198 5.13311 5.26736
5.28969 5.35405 5.52956 5.57579 5.95372 6.03455 6.10639 6.24069
6.30967 6.66059 6.84301 6.96670 7.47908 8.11117 8.87362
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.024678 B = 0.002141 C = 0.002017
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1134.325197 B =13076.130275 C =13879.878543
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.490 5.490
2 C 0.314 3.686
3 C -0.160 4.160
4 C 0.143 3.857
5 N -0.511 5.511
6 H 0.446 0.554
7 C -0.059 4.059
8 C 0.587 3.413
9 O -0.572 6.572
10 N -0.610 5.610
11 C 0.126 3.874
12 C 0.043 3.957
13 N -0.522 5.522
14 C 0.086 3.914
15 H 0.043 0.957
16 C -0.104 4.104
17 C 0.100 3.900
18 N -0.635 5.635
19 C -0.316 4.316
20 H 0.042 0.958
21 C -0.086 4.086
22 N -0.962 5.962
23 Si 1.110 2.890
24 H -0.241 1.241
25 H -0.283 1.283
26 H -0.315 1.315
27 C 0.146 3.854
28 C 0.035 3.965
29 C 0.093 3.907
30 C -0.064 4.064
31 H 0.238 0.762
32 H 0.091 0.909
33 H 0.086 0.914
34 H 0.082 0.918
35 H 0.028 0.972
36 H 0.101 0.899
37 H 0.099 0.901
38 H 0.033 0.967
39 H 0.028 0.972
40 H 0.245 0.755
41 H 0.037 0.963
42 H 0.024 0.976
43 H 0.034 0.966
44 H 0.117 0.883
45 H 0.110 0.890
46 H 0.116 0.884
47 H 0.146 0.854
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.598 -7.133 -15.163 29.763
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.167 5.167
2 C 0.000 4.000
3 C -0.170 4.170
4 C -0.003 4.003
5 N -0.113 5.113
6 H 0.296 0.704
7 C -0.169 4.169
8 C 0.378 3.622
9 O -0.451 6.451
10 N -0.342 5.342
11 C 0.003 3.997
12 C -0.086 4.086
13 N -0.247 5.247
14 C -0.024 4.024
15 H 0.061 0.939
16 C -0.142 4.142
17 C -0.024 4.024
18 N -0.363 5.363
19 C -0.445 4.445
20 H 0.060 0.940
21 C -0.278 4.278
22 N -0.606 5.606
23 Si 0.937 3.063
24 H -0.165 1.165
25 H -0.211 1.211
26 H -0.244 1.244
27 C 0.020 3.980
28 C -0.093 4.093
29 C -0.030 4.030
30 C -0.092 4.092
31 H 0.254 0.746
32 H 0.109 0.891
33 H 0.104 0.896
34 H 0.101 0.899
35 H 0.047 0.953
36 H 0.120 0.880
37 H 0.117 0.883
38 H 0.051 0.949
39 H 0.045 0.955
40 H 0.054 0.946
41 H 0.055 0.945
42 H 0.043 0.957
43 H 0.052 0.948
44 H 0.135 0.865
45 H 0.128 0.872
46 H 0.133 0.867
47 H 0.164 0.836
Dipole moment (debyes) X Y Z Total
from point charges -25.481 -6.347 -15.803 30.649
hybrid contribution 0.941 -1.542 2.336 2.953
sum -24.540 -7.889 -13.468 29.083
Atomic orbital electron populations
1.81320 1.13425 1.11815 1.10176 1.24898 0.91696 0.91477 0.91888
1.15419 0.84018 1.14059 1.03533 1.23060 0.81330 0.97184 0.98760
1.42713 1.09352 1.38863 1.20419 0.70424 1.19501 0.93943 1.08430
0.95066 1.17386 0.82113 0.81800 0.80939 1.90847 1.85332 1.30852
1.38116 1.48160 1.06544 1.28619 1.50876 1.21658 0.83842 0.95461
0.98712 1.22442 1.00550 0.92035 0.93529 1.61927 1.15073 1.08079
1.39640 1.22580 0.92151 0.91646 0.95979 0.93876 1.22636 0.95202
0.96301 1.00066 1.22156 0.93470 0.92528 0.94242 1.44860 1.16820
1.08943 1.65668 1.19996 0.94718 1.02020 1.27724 0.94036 1.27206
0.96913 0.99849 1.03870 1.71053 1.36223 1.35096 1.18256 0.83432
0.76306 0.73722 0.72846 1.16512 1.21053 1.24420 1.21622 0.89882
0.88523 0.97957 1.22634 0.88452 0.98332 0.99881 1.22613 1.02238
0.83245 0.94867 1.21075 0.89928 0.98874 0.99320 0.74582 0.89105
0.89594 0.89934 0.95321 0.88025 0.88263 0.94886 0.95505 0.94620
0.94549 0.95729 0.94814 0.86470 0.87197 0.86702 0.83582
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.49 -10.55 18.54 19.01 0.35 -10.20 16
2 C 0.31 4.80 15.83 88.33 1.40 6.20 16
3 C -0.16 -1.49 5.97 -21.30 -0.13 -1.62 16
4 C 0.14 0.07 11.90 84.28 1.00 1.07 16
5 N -0.51 -0.78 4.76 -183.26 -0.87 -1.66 16
6 H 0.45 -1.94 5.90 -92.71 -0.55 -2.49 16
7 C -0.06 -0.66 6.45 40.02 0.26 -0.40 16
8 C 0.59 10.32 7.65 86.48 0.66 10.98 16
9 O -0.57 -15.23 16.37 -4.29 -0.07 -15.30 16
10 N -0.61 -8.35 3.01 -822.51 -2.48 -10.82 16
11 C 0.13 2.11 6.61 86.35 0.57 2.68 16
12 C 0.04 0.85 5.52 86.38 0.48 1.33 16
13 N -0.52 -9.84 4.53 -861.47 -3.90 -13.74 16
14 C 0.09 2.26 2.73 46.38 0.13 2.39 16
15 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16
16 C -0.10 -2.56 5.03 31.78 0.16 -2.40 16
17 C 0.10 3.84 4.57 86.73 0.40 4.23 16
18 N -0.63 -29.76 3.35 -691.55 -2.32 -32.08 16
19 C -0.32 -18.32 10.52 84.03 0.88 -17.44 16
20 H 0.04 2.63 8.06 -2.91 -0.02 2.60 16
21 C -0.09 -5.11 5.48 84.86 0.47 -4.65 16
22 N -0.96 -62.16 13.70 21.65 0.30 -61.86 16
23 Si 1.11 52.07 24.58 68.60 1.69 53.76 16
24 H -0.24 -9.60 5.24 99.48 0.52 -9.08 16
25 H -0.28 -12.43 6.96 99.48 0.69 -11.73 16
26 H -0.31 -15.37 7.11 99.48 0.71 -14.67 16
27 C 0.15 5.38 5.96 86.93 0.52 5.89 16
28 C 0.04 0.40 5.43 86.38 0.47 0.87 16
29 C 0.09 0.56 5.43 86.35 0.47 1.03 16
30 C -0.06 -0.84 10.59 22.59 0.24 -0.60 16
31 H 0.24 -2.09 8.06 -2.91 -0.02 -2.11 16
32 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16
33 H 0.09 1.70 7.04 -2.39 -0.02 1.68 16
34 H 0.08 1.82 7.05 -2.39 -0.02 1.80 16
35 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16
36 H 0.10 1.83 7.96 -2.39 -0.02 1.82 16
37 H 0.10 2.06 8.10 -2.39 -0.02 2.04 16
38 H 0.03 1.35 6.58 -2.38 -0.02 1.33 16
39 H 0.03 1.07 4.26 -2.39 -0.01 1.06 16
40 H 0.24 15.96 8.73 -92.71 -0.81 15.15 16
41 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16
42 H 0.02 0.96 7.87 -2.38 -0.02 0.94 16
43 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16
44 H 0.12 0.87 6.64 -2.39 -0.02 0.85 16
45 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16
46 H 0.12 0.05 4.05 -2.39 -0.01 0.04 16
47 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16
Total: -1.00 -86.63 371.03 0.91 -85.72
By element:
Atomic # 1 Polarization: -3.64 SS G_CDS: 0.23 Total: -3.40 kcal
Atomic # 6 Polarization: 1.61 SS G_CDS: 7.97 Total: 9.58 kcal
Atomic # 7 Polarization: -121.44 SS G_CDS: -8.91 Total: -130.36 kcal
Atomic # 8 Polarization: -15.23 SS G_CDS: -0.07 Total: -15.30 kcal
Atomic # 14 Polarization: 52.07 SS G_CDS: 1.69 Total: 53.76 kcal
Total: -86.63 0.91 -85.72 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001046018358.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 176.485 kcal
(2) G-P(sol) polarization free energy of solvation -86.628 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.857 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.906 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.722 kcal
(6) G-S(sol) free energy of system = (1) + (5) 90.763 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 7.82 seconds