Wall clock time and date at job start Sat Apr 11 2020 06:55:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31623 * 1
3 3 Si 1.86800 * 119.99716 * 2 1
4 4 H 1.48504 * 109.46892 * 180.02562 * 3 2 1
5 5 H 1.48495 * 109.47418 * 300.00197 * 3 2 1
6 6 H 1.48500 * 109.46975 * 60.00472 * 3 2 1
7 7 C 1.38805 * 120.00086 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99983 * 179.97438 * 7 2 1
9 9 N 1.36946 * 120.00125 * 359.97438 * 7 2 1
10 10 C 1.47422 * 125.64503 * 14.63353 * 9 7 2
11 11 C 1.54910 * 104.82705 * 155.90694 * 10 9 7
12 12 C 1.55151 * 101.58432 * 37.01169 * 11 10 9
13 13 C 1.47015 * 125.64962 * 194.67763 * 9 7 2
14 14 H 1.09003 * 109.88457 * 300.59814 * 13 9 7
15 15 C 1.52996 * 109.88280 * 61.60165 * 13 9 7
16 16 C 1.53000 * 109.47252 * 185.23848 * 15 13 9
17 17 C 1.53009 * 109.47023 * 174.95171 * 16 15 13
18 18 N 1.46506 * 109.46955 * 180.02562 * 17 16 15
19 19 C 1.34768 * 120.00072 * 179.97438 * 18 17 16
20 20 O 1.21599 * 120.00084 * 0.02562 * 19 18 17
21 21 C 1.47599 * 120.00379 * 180.02562 * 19 18 17
22 22 C 1.41820 * 119.97721 * 359.71858 * 21 19 18
23 23 C 1.35641 * 119.59528 * 179.79072 * 22 21 19
24 24 C 1.41045 * 119.40789 * 0.45866 * 23 22 21
25 25 N 1.32181 * 133.26213 * 179.79570 * 24 23 22
26 26 N 1.28648 * 109.56708 * 179.97438 * 25 24 23
27 27 C 1.30727 * 110.34422 * 0.02562 * 26 25 24
28 28 N 1.36252 * 107.45051 * 359.97438 * 27 26 25
29 29 C 1.35839 * 133.52600 * 180.02562 * 28 27 26
30 30 H 0.96998 * 120.00044 * 359.97438 * 1 2 3
31 31 H 1.08998 * 110.36948 * 274.74374 * 10 9 7
32 32 H 1.09004 * 110.36922 * 37.07547 * 10 9 7
33 33 H 1.09007 * 111.00007 * 155.08208 * 11 10 9
34 34 H 1.08996 * 111.00809 * 278.89195 * 11 10 9
35 35 H 1.08999 * 110.72713 * 206.13107 * 12 11 10
36 36 H 1.09004 * 110.72288 * 82.85504 * 12 11 10
37 37 H 1.09004 * 109.46878 * 65.24230 * 15 13 9
38 38 H 1.09004 * 109.47464 * 305.24167 * 15 13 9
39 39 H 1.08998 * 109.47152 * 54.95716 * 16 15 13
40 40 H 1.09004 * 109.47229 * 294.94862 * 16 15 13
41 41 H 1.09004 * 109.46866 * 299.99913 * 17 16 15
42 42 H 1.08996 * 109.47153 * 60.00557 * 17 16 15
43 43 H 0.97004 * 119.99658 * 0.02562 * 18 17 16
44 44 H 1.08005 * 120.20205 * 0.02562 * 22 21 19
45 45 H 1.08000 * 120.29254 * 180.22504 * 23 22 21
46 46 H 1.07994 * 126.27431 * 179.97438 * 27 26 25
47 47 H 1.07996 * 119.81014 * 359.93314 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.7102 1.3464 -0.0006
5 1 1.8914 2.3965 -1.2124
6 1 1.8914 2.3964 1.2126
7 6 2.0103 -1.2021 -0.0005
8 1 3.0903 -1.2021 -0.0010
9 7 1.3256 -2.3881 -0.0005
10 6 -0.1079 -2.5525 -0.3027
11 6 -0.2477 -4.0214 -0.7746
12 6 0.7643 -4.7442 0.1531
13 6 1.8982 -3.7080 0.3016
14 1 2.7026 -3.9324 -0.3988
15 6 2.4357 -3.7265 1.7339
16 6 3.1447 -5.0568 1.9955
17 6 3.7904 -5.0266 3.3823
18 7 4.4698 -6.3003 3.6326
19 6 5.1138 -6.5027 4.7990
20 8 5.1306 -5.6284 5.6439
21 6 5.7987 -7.7856 5.0509
22 6 5.7738 -8.8073 4.0676
23 6 6.4094 -9.9817 4.3055
24 6 7.0776 -10.1713 5.5331
25 7 7.7647 -11.1780 6.0444
26 7 8.1847 -10.8608 7.2183
27 6 7.7987 -9.6507 7.5275
28 7 7.0836 -9.1680 6.4729
29 6 6.4507 -7.9903 6.2325
30 1 -0.4850 0.8400 0.0004
31 1 -0.7062 -2.3831 0.5925
32 1 -0.4092 -1.8689 -1.0964
33 1 -1.2604 -4.3898 -0.6103
34 1 0.0383 -4.1244 -1.8213
35 1 1.1341 -5.6561 -0.3157
36 1 0.3125 -4.9628 1.1207
37 1 1.6081 -3.6120 2.4341
38 1 3.1411 -2.9063 1.8679
39 1 3.9144 -5.2131 1.2398
40 1 2.4200 -5.8699 1.9498
41 1 4.5150 -4.2136 3.4280
42 1 3.0208 -4.8704 4.1382
43 1 4.4566 -6.9976 2.9583
44 1 5.2551 -8.6498 3.1334
45 1 6.4007 -10.7660 3.5631
46 1 8.0082 -9.1293 8.4497
47 1 6.4632 -7.2116 6.9807
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001317431193.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:55:50
Heat of formation + Delta-G solvation = 91.923470 kcal
Electronic energy + Delta-G solvation = -28334.349900 eV
Core-core repulsion = 24326.404929 eV
Total energy + Delta-G solvation = -4007.944971 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-44.10609 -40.45148 -38.29177 -37.84949 -35.81203 -34.69913 -33.12083 -32.36707
-31.76923 -29.98875 -29.44240 -28.27850 -25.75748 -24.68080 -24.31507 -23.79822
-23.05531 -21.67109 -21.31800 -20.17916 -19.30412 -18.98748 -17.91753 -17.62742
-17.09699 -16.74769 -16.36186 -15.89722 -15.61569 -15.38488 -15.10751 -14.69435
-14.52315 -14.22425 -13.94701 -13.80335 -13.14203 -12.87998 -12.67445 -12.40746
-12.21216 -12.10012 -11.97021 -11.90942 -11.78275 -11.53984 -11.14254 -11.07752
-10.86306 -10.81341 -10.64085 -10.46393 -10.21439 -10.07952 -10.02836 -9.80808
-9.66608 -9.65517 -9.38413 -8.76669 -8.59552 -6.78849 -5.76299 -3.11496
-0.17266 0.28845 1.59438 1.92907 2.42224 2.73864 2.96638 3.37055
3.43302 3.43657 3.45287 3.87774 3.90070 4.08705 4.12805 4.29543
4.46888 4.61605 4.90752 5.00790 5.06590 5.16394 5.29154 5.32191
5.38013 5.41221 5.52887 5.56330 5.61221 5.66637 5.78994 5.84490
5.93095 6.02132 6.12829 6.17288 6.25114 6.30434 6.37483 6.53008
6.65692 6.69056 6.90935 7.06213 7.13787 7.53308 7.62066 7.73780
7.79219 7.94833 8.28093 9.19090 9.80727 10.49831 11.36099
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.020695 B = 0.001764 C = 0.001663
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1352.649461 B =15868.107279 C =16829.667345
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.917 5.917
2 C -0.006 4.006
3 Si 0.908 3.092
4 H -0.279 1.279
5 H -0.291 1.291
6 H -0.290 1.290
7 C -0.226 4.226
8 H 0.075 0.925
9 N -0.596 5.596
10 C 0.173 3.827
11 C -0.151 4.151
12 C -0.124 4.124
13 C 0.162 3.838
14 H 0.031 0.969
15 C -0.122 4.122
16 C -0.128 4.128
17 C 0.117 3.883
18 N -0.716 5.716
19 C 0.566 3.434
20 O -0.533 6.533
21 C -0.152 4.152
22 C -0.069 4.069
23 C -0.077 4.077
24 C 0.200 3.800
25 N -0.287 5.287
26 N -0.250 5.250
27 C 0.129 3.871
28 N -0.399 5.399
29 C 0.142 3.858
30 H 0.252 0.748
31 H 0.024 0.976
32 H 0.069 0.931
33 H 0.056 0.944
34 H 0.056 0.944
35 H 0.055 0.945
36 H 0.061 0.939
37 H 0.059 0.941
38 H 0.066 0.934
39 H 0.065 0.935
40 H 0.066 0.934
41 H 0.073 0.927
42 H 0.072 0.928
43 H 0.401 0.599
44 H 0.153 0.847
45 H 0.165 0.835
46 H 0.232 0.768
47 H 0.188 0.812
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.857 -19.326 8.888 23.445
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.564 5.564
2 C -0.202 4.202
3 Si 0.738 3.262
4 H -0.205 1.205
5 H -0.218 1.218
6 H -0.217 1.217
7 C -0.355 4.355
8 H 0.092 0.908
9 N -0.320 5.320
10 C 0.048 3.952
11 C -0.189 4.189
12 C -0.162 4.162
13 C 0.055 3.945
14 H 0.048 0.952
15 C -0.163 4.163
16 C -0.167 4.167
17 C -0.005 4.005
18 N -0.367 5.367
19 C 0.351 3.649
20 O -0.411 6.411
21 C -0.159 4.159
22 C -0.093 4.093
23 C -0.099 4.099
24 C -0.050 4.050
25 N -0.132 5.132
26 N -0.088 5.088
27 C -0.154 4.154
28 N -0.079 5.079
29 C 0.017 3.983
30 H 0.062 0.938
31 H 0.042 0.958
32 H 0.087 0.913
33 H 0.074 0.926
34 H 0.075 0.925
35 H 0.073 0.927
36 H 0.079 0.921
37 H 0.078 0.922
38 H 0.085 0.915
39 H 0.084 0.916
40 H 0.084 0.916
41 H 0.091 0.909
42 H 0.090 0.910
43 H 0.236 0.764
44 H 0.170 0.830
45 H 0.183 0.817
46 H 0.248 0.752
47 H 0.205 0.795
Dipole moment (debyes) X Y Z Total
from point charges 10.583 -19.918 9.735 24.566
hybrid contribution -0.165 1.897 -0.237 1.919
sum 10.418 -18.021 9.498 22.880
Atomic orbital electron populations
1.69948 1.04981 1.25015 1.56464 1.24905 0.95663 0.97780 1.01898
0.86110 0.78875 0.83934 0.77249 1.20450 1.21796 1.21713 1.18998
0.90329 0.82324 1.43834 0.90767 1.44551 1.06188 1.01333 1.79968
1.21405 0.85204 0.90011 0.98612 1.23013 0.97522 0.99822 0.98580
1.22589 0.97183 0.97108 0.99334 1.20924 0.93922 0.87054 0.92625
0.95160 1.22039 0.99891 0.94500 0.99831 1.21857 0.99869 1.00503
0.94438 1.21632 0.96558 0.84089 0.98256 1.45964 1.53997 1.19121
1.17584 1.17604 0.78912 0.85741 0.82608 1.90851 1.60913 1.44414
1.44903 1.19564 1.04159 0.97073 0.95106 1.21236 0.97456 0.91578
0.99052 1.20204 0.97093 0.99202 0.93352 1.22617 1.02235 0.86550
0.93569 1.74965 1.13915 1.20957 1.03344 1.74217 1.17318 1.10033
1.07214 1.26732 0.99432 0.94337 0.94851 1.43916 1.35638 1.13030
1.15291 1.21773 0.91317 0.86748 0.98504 0.93769 0.95825 0.91314
0.92566 0.92492 0.92652 0.92051 0.92179 0.91535 0.91591 0.91579
0.90884 0.90968 0.76396 0.82975 0.81743 0.75192 0.79494
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -26.42 10.58 55.49 0.59 -25.83 16
2 C -0.01 -0.16 5.47 -17.43 -0.10 -0.25 16
3 Si 0.91 21.67 29.55 -169.99 -5.02 16.65 16
4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16
6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16
7 C -0.23 -6.04 9.71 -15.06 -0.15 -6.19 16
8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16
9 N -0.60 -14.40 3.13 -162.58 -0.51 -14.91 16
10 C 0.17 4.05 5.41 -2.53 -0.01 4.04 16
11 C -0.15 -2.71 7.08 -24.59 -0.17 -2.88 16
12 C -0.12 -1.97 5.71 -24.90 -0.14 -2.11 16
13 C 0.16 3.03 3.16 -66.96 -0.21 2.82 16
14 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16
15 C -0.12 -1.98 4.71 -26.73 -0.13 -2.10 16
16 C -0.13 -1.41 5.10 -26.73 -0.14 -1.54 16
17 C 0.12 1.25 5.68 -4.03 -0.02 1.23 16
18 N -0.72 -5.83 5.51 -61.32 -0.34 -6.17 16
19 C 0.57 5.37 7.76 -12.44 -0.10 5.27 16
20 O -0.53 -7.05 16.27 5.28 0.09 -6.96 16
21 C -0.15 -1.07 5.84 -105.34 -0.61 -1.68 16
22 C -0.07 -0.34 9.53 -39.14 -0.37 -0.71 16
23 C -0.08 -0.46 10.09 -39.45 -0.40 -0.86 16
24 C 0.20 1.82 7.92 -155.94 -1.23 0.59 16
25 N -0.29 -3.35 12.29 31.19 0.38 -2.96 16
26 N -0.25 -2.74 12.18 29.87 0.36 -2.38 16
27 C 0.13 0.95 12.97 -89.07 -1.16 -0.21 16
28 N -0.40 -3.10 2.94 -63.63 -0.19 -3.29 16
29 C 0.14 0.97 10.53 -16.41 -0.17 0.79 16
30 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16
31 H 0.02 0.60 8.06 -51.93 -0.42 0.19 16
32 H 0.07 1.81 6.93 -51.93 -0.36 1.45 16
33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16
34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16
35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16
36 H 0.06 0.93 7.76 -51.93 -0.40 0.52 16
37 H 0.06 1.04 8.02 -51.93 -0.42 0.63 16
38 H 0.07 1.21 7.84 -51.93 -0.41 0.80 16
39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
40 H 0.07 0.64 7.65 -51.93 -0.40 0.24 16
41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16
42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16
43 H 0.40 2.02 6.50 -40.82 -0.27 1.75 16
44 H 0.15 0.29 6.44 -52.48 -0.34 -0.05 16
45 H 0.17 0.59 8.06 -52.49 -0.42 0.17 16
46 H 0.23 0.60 8.06 -52.49 -0.42 0.17 16
47 H 0.19 1.00 7.56 -52.49 -0.40 0.60 16
LS Contribution 386.45 15.07 5.82 5.82
Total: -1.00 -35.07 386.45 -10.68 -45.75
By element:
Atomic # 1 Polarization: 4.84 SS G_CDS: -6.75 Total: -1.91 kcal
Atomic # 6 Polarization: 1.31 SS G_CDS: -5.11 Total: -3.80 kcal
Atomic # 7 Polarization: -55.84 SS G_CDS: 0.30 Total: -55.54 kcal
Atomic # 8 Polarization: -7.05 SS G_CDS: 0.09 Total: -6.96 kcal
Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal
Total LS contribution 5.82 Total: 5.82 kcal
Total: -35.07 -10.68 -45.75 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001317431193.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 137.669 kcal
(2) G-P(sol) polarization free energy of solvation -35.066 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.603 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.680 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.746 kcal
(6) G-S(sol) free energy of system = (1) + (5) 91.923 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds