Wall clock time and date at job start Sat Apr 11 2020 06:55:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31623 * 1
3 3 Si 1.86800 * 119.99716 * 2 1
4 4 H 1.48504 * 109.46892 * 180.02562 * 3 2 1
5 5 H 1.48495 * 109.47418 * 300.00197 * 3 2 1
6 6 H 1.48500 * 109.46975 * 60.00472 * 3 2 1
7 7 C 1.38805 * 120.00086 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99983 * 179.97438 * 7 2 1
9 9 N 1.36946 * 120.00125 * 359.97438 * 7 2 1
10 10 C 1.47422 * 125.64503 * 14.63353 * 9 7 2
11 11 C 1.54910 * 104.82705 * 155.90694 * 10 9 7
12 12 C 1.55151 * 101.58432 * 37.01169 * 11 10 9
13 13 C 1.47015 * 125.64962 * 194.67763 * 9 7 2
14 14 H 1.09003 * 109.88457 * 300.59814 * 13 9 7
15 15 C 1.52996 * 109.88280 * 61.60165 * 13 9 7
16 16 C 1.53000 * 109.47252 * 185.23848 * 15 13 9
17 17 C 1.53009 * 109.47023 * 174.95171 * 16 15 13
18 18 N 1.46506 * 109.46955 * 180.02562 * 17 16 15
19 19 C 1.34768 * 120.00072 * 179.97438 * 18 17 16
20 20 O 1.21599 * 120.00084 * 0.02562 * 19 18 17
21 21 C 1.47599 * 120.00379 * 180.02562 * 19 18 17
22 22 C 1.41820 * 119.97721 * 359.71858 * 21 19 18
23 23 C 1.35641 * 119.59528 * 179.79072 * 22 21 19
24 24 C 1.41045 * 119.40789 * 0.45866 * 23 22 21
25 25 N 1.32181 * 133.26213 * 179.79570 * 24 23 22
26 26 N 1.28648 * 109.56708 * 179.97438 * 25 24 23
27 27 C 1.30727 * 110.34422 * 0.02562 * 26 25 24
28 28 N 1.36252 * 107.45051 * 359.97438 * 27 26 25
29 29 C 1.35839 * 133.52600 * 180.02562 * 28 27 26
30 30 H 0.96998 * 120.00044 * 359.97438 * 1 2 3
31 31 H 1.08998 * 110.36948 * 274.74374 * 10 9 7
32 32 H 1.09004 * 110.36922 * 37.07547 * 10 9 7
33 33 H 1.09007 * 111.00007 * 155.08208 * 11 10 9
34 34 H 1.08996 * 111.00809 * 278.89195 * 11 10 9
35 35 H 1.08999 * 110.72713 * 206.13107 * 12 11 10
36 36 H 1.09004 * 110.72288 * 82.85504 * 12 11 10
37 37 H 1.09004 * 109.46878 * 65.24230 * 15 13 9
38 38 H 1.09004 * 109.47464 * 305.24167 * 15 13 9
39 39 H 1.08998 * 109.47152 * 54.95716 * 16 15 13
40 40 H 1.09004 * 109.47229 * 294.94862 * 16 15 13
41 41 H 1.09004 * 109.46866 * 299.99913 * 17 16 15
42 42 H 1.08996 * 109.47153 * 60.00557 * 17 16 15
43 43 H 0.97004 * 119.99658 * 0.02562 * 18 17 16
44 44 H 1.08005 * 120.20205 * 0.02562 * 22 21 19
45 45 H 1.08000 * 120.29254 * 180.22504 * 23 22 21
46 46 H 1.07994 * 126.27431 * 179.97438 * 27 26 25
47 47 H 1.07996 * 119.81014 * 359.93314 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.7102 1.3464 -0.0006
5 1 1.8914 2.3965 -1.2124
6 1 1.8914 2.3964 1.2126
7 6 2.0103 -1.2021 -0.0005
8 1 3.0903 -1.2021 -0.0010
9 7 1.3256 -2.3881 -0.0005
10 6 -0.1079 -2.5525 -0.3027
11 6 -0.2477 -4.0214 -0.7746
12 6 0.7643 -4.7442 0.1531
13 6 1.8982 -3.7080 0.3016
14 1 2.7026 -3.9324 -0.3988
15 6 2.4357 -3.7265 1.7339
16 6 3.1447 -5.0568 1.9955
17 6 3.7904 -5.0266 3.3823
18 7 4.4698 -6.3003 3.6326
19 6 5.1138 -6.5027 4.7990
20 8 5.1306 -5.6284 5.6439
21 6 5.7987 -7.7856 5.0509
22 6 5.7738 -8.8073 4.0676
23 6 6.4094 -9.9817 4.3055
24 6 7.0776 -10.1713 5.5331
25 7 7.7647 -11.1780 6.0444
26 7 8.1847 -10.8608 7.2183
27 6 7.7987 -9.6507 7.5275
28 7 7.0836 -9.1680 6.4729
29 6 6.4507 -7.9903 6.2325
30 1 -0.4850 0.8400 0.0004
31 1 -0.7062 -2.3831 0.5925
32 1 -0.4092 -1.8689 -1.0964
33 1 -1.2604 -4.3898 -0.6103
34 1 0.0383 -4.1244 -1.8213
35 1 1.1341 -5.6561 -0.3157
36 1 0.3125 -4.9628 1.1207
37 1 1.6081 -3.6120 2.4341
38 1 3.1411 -2.9063 1.8679
39 1 3.9144 -5.2131 1.2398
40 1 2.4200 -5.8699 1.9498
41 1 4.5150 -4.2136 3.4280
42 1 3.0208 -4.8704 4.1382
43 1 4.4566 -6.9976 2.9583
44 1 5.2551 -8.6498 3.1334
45 1 6.4007 -10.7660 3.5631
46 1 8.0082 -9.1293 8.4497
47 1 6.4632 -7.2116 6.9807
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001317431193.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:55:49
Heat of formation + Delta-G solvation = 71.018601 kcal
Electronic energy + Delta-G solvation = -28335.256404 eV
Core-core repulsion = 24326.404929 eV
Total energy + Delta-G solvation = -4008.851474 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-44.69501 -41.17553 -39.46718 -38.82582 -36.76473 -35.29303 -34.64034 -33.69885
-32.51188 -31.20887 -30.55340 -29.53783 -26.81261 -26.31406 -24.95529 -24.82903
-23.63161 -22.68385 -22.09277 -21.84105 -20.73978 -19.66592 -18.73999 -18.44698
-18.14222 -17.70443 -17.12283 -16.93632 -16.70028 -16.27151 -16.00247 -15.85745
-15.68942 -15.50701 -15.07396 -14.48714 -14.33201 -13.94058 -13.67963 -13.62494
-13.53422 -13.22128 -13.08403 -12.96715 -12.78827 -12.72130 -12.62799 -12.40376
-12.20325 -11.94460 -11.78443 -11.76332 -11.66892 -11.52656 -11.30658 -11.24538
-11.07516 -10.84365 -10.64047 -10.16588 -9.30683 -8.74548 -7.83831 -5.18969
-0.69999 -0.20849 1.04297 1.32415 1.45130 1.45967 1.55584 1.77680
2.04425 2.38137 2.51048 2.94108 3.32677 3.35907 3.42530 3.57137
3.71897 3.74227 3.81305 3.96825 4.06406 4.15564 4.23305 4.30952
4.39430 4.48360 4.56006 4.67621 4.75631 4.82824 4.84276 4.86869
4.88519 4.92512 5.03967 5.09257 5.17679 5.19183 5.27664 5.33659
5.41956 5.53736 5.57905 5.65369 5.70961 5.76444 5.82978 6.30271
6.42741 7.07538 7.15175 7.32461 7.85566 8.52424 9.27962
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.020695 B = 0.001764 C = 0.001663
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1352.649461 B =15868.107279 C =16829.667345
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.950 5.950
2 C -0.068 4.068
3 Si 0.969 3.031
4 H -0.265 1.265
5 H -0.294 1.294
6 H -0.296 1.296
7 C -0.226 4.226
8 H 0.077 0.923
9 N -0.620 5.620
10 C 0.174 3.826
11 C -0.139 4.139
12 C -0.110 4.110
13 C 0.151 3.849
14 H 0.037 0.963
15 C -0.114 4.114
16 C -0.110 4.110
17 C 0.124 3.876
18 N -0.700 5.700
19 C 0.569 3.431
20 O -0.576 6.576
21 C -0.156 4.156
22 C -0.050 4.050
23 C -0.086 4.086
24 C 0.191 3.809
25 N -0.333 5.333
26 N -0.293 5.293
27 C 0.141 3.859
28 N -0.403 5.403
29 C 0.145 3.855
30 H 0.244 0.756
31 H -0.010 1.010
32 H 0.027 0.973
33 H 0.079 0.921
34 H 0.063 0.937
35 H 0.099 0.901
36 H 0.072 0.928
37 H 0.041 0.959
38 H 0.037 0.963
39 H 0.084 0.916
40 H 0.093 0.907
41 H 0.054 0.946
42 H 0.059 0.941
43 H 0.420 0.580
44 H 0.190 0.810
45 H 0.188 0.812
46 H 0.272 0.728
47 H 0.199 0.801
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.626 -21.486 8.283 25.361
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.599 5.599
2 C -0.261 4.261
3 Si 0.798 3.202
4 H -0.189 1.189
5 H -0.221 1.221
6 H -0.223 1.223
7 C -0.356 4.356
8 H 0.095 0.905
9 N -0.344 5.344
10 C 0.049 3.951
11 C -0.177 4.177
12 C -0.148 4.148
13 C 0.045 3.955
14 H 0.055 0.945
15 C -0.154 4.154
16 C -0.148 4.148
17 C 0.001 3.999
18 N -0.352 5.352
19 C 0.355 3.645
20 O -0.457 6.457
21 C -0.163 4.163
22 C -0.074 4.074
23 C -0.107 4.107
24 C -0.060 4.060
25 N -0.177 5.177
26 N -0.129 5.129
27 C -0.142 4.142
28 N -0.083 5.083
29 C 0.019 3.981
30 H 0.054 0.946
31 H 0.009 0.991
32 H 0.045 0.955
33 H 0.097 0.903
34 H 0.081 0.919
35 H 0.117 0.883
36 H 0.090 0.910
37 H 0.060 0.940
38 H 0.055 0.945
39 H 0.103 0.897
40 H 0.112 0.888
41 H 0.073 0.927
42 H 0.077 0.923
43 H 0.259 0.741
44 H 0.207 0.793
45 H 0.205 0.795
46 H 0.287 0.713
47 H 0.216 0.784
Dipole moment (debyes) X Y Z Total
from point charges 11.392 -22.165 9.106 26.533
hybrid contribution -0.403 2.598 -0.041 2.630
sum 10.989 -19.567 9.065 24.203
Atomic orbital electron populations
1.70158 1.06311 1.24977 1.58494 1.25666 0.96472 1.00940 1.03019
0.85145 0.78434 0.80128 0.76514 1.18927 1.22145 1.22303 1.19330
0.90721 0.83705 1.41807 0.90474 1.44871 1.06519 1.02688 1.80318
1.21199 0.84802 0.93181 0.95949 1.22884 0.99814 0.95712 0.99298
1.22591 0.95101 0.97381 0.99724 1.21248 0.95192 0.85242 0.93831
0.94499 1.21826 0.98989 0.96780 0.97787 1.21657 1.00471 0.97889
0.94790 1.21342 0.95914 0.84815 0.97861 1.45710 1.53096 1.18663
1.17773 1.17863 0.78449 0.85958 0.82206 1.90841 1.62501 1.46007
1.46331 1.19434 1.04412 0.96507 0.95937 1.21551 0.96245 0.90077
0.99518 1.20538 0.97049 1.00349 0.92764 1.23125 1.01880 0.86314
0.94668 1.74851 1.15951 1.22692 1.04200 1.74114 1.19097 1.12012
1.07691 1.27525 0.97629 0.93459 0.95572 1.44017 1.35857 1.13108
1.15285 1.21989 0.90668 0.86497 0.98926 0.94620 0.99148 0.95471
0.90263 0.91860 0.88275 0.90968 0.93993 0.94451 0.89742 0.88831
0.92734 0.92285 0.74136 0.79330 0.79480 0.71290 0.78387
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -57.14 10.58 21.65 0.23 -56.91 16
2 C -0.07 -3.84 5.47 84.86 0.46 -3.38 16
3 Si 0.97 45.65 29.55 68.60 2.03 47.68 16
4 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16
5 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16
6 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16
7 C -0.23 -12.27 9.71 84.03 0.82 -11.46 16
8 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16
9 N -0.62 -30.13 3.13 -668.29 -2.09 -32.22 16
10 C 0.17 8.34 5.41 86.86 0.47 8.81 16
11 C -0.14 -4.67 7.08 31.98 0.23 -4.44 16
12 C -0.11 -3.05 5.71 31.78 0.18 -2.86 16
13 C 0.15 5.31 3.16 45.34 0.14 5.45 16
14 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16
15 C -0.11 -3.51 4.71 30.59 0.14 -3.36 16
16 C -0.11 -2.00 5.10 30.60 0.16 -1.84 16
17 C 0.12 2.38 5.68 86.38 0.49 2.87 16
18 N -0.70 -8.98 5.51 -466.17 -2.57 -11.54 16
19 C 0.57 9.41 7.76 86.72 0.67 10.08 16
20 O -0.58 -14.61 16.27 -4.03 -0.07 -14.67 16
21 C -0.16 -1.75 5.84 -20.33 -0.12 -1.87 16
22 C -0.05 -0.30 9.53 22.55 0.21 -0.08 16
23 C -0.09 -0.79 10.09 22.36 0.23 -0.57 16
24 C 0.19 3.24 7.92 134.11 1.06 4.30 16
25 N -0.33 -7.76 12.29 -55.23 -0.68 -8.44 16
26 N -0.29 -6.41 12.18 -59.41 -0.72 -7.14 16
27 C 0.14 1.92 12.97 179.81 2.33 4.25 16
28 N -0.40 -5.66 2.94 -355.22 -1.04 -6.70 16
29 C 0.14 1.68 10.53 83.67 0.88 2.56 16
30 H 0.24 14.36 8.31 -92.71 -0.77 13.59 16
31 H -0.01 -0.51 8.06 -2.39 -0.02 -0.53 16
32 H 0.03 1.49 6.93 -2.38 -0.02 1.48 16
33 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16
34 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16
35 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16
36 H 0.07 1.87 7.76 -2.39 -0.02 1.85 16
37 H 0.04 1.43 8.02 -2.39 -0.02 1.41 16
38 H 0.04 1.35 7.84 -2.38 -0.02 1.33 16
39 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16
40 H 0.09 1.27 7.65 -2.39 -0.02 1.25 16
41 H 0.05 1.26 8.14 -2.39 -0.02 1.25 16
42 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16
43 H 0.42 2.06 6.50 -92.71 -0.60 1.46 16
44 H 0.19 -0.36 6.44 -2.91 -0.02 -0.37 16
45 H 0.19 0.76 8.06 -2.91 -0.02 0.73 16
46 H 0.27 0.82 8.06 -2.91 -0.02 0.79 16
47 H 0.20 1.77 7.56 -2.91 -0.02 1.75 16
Total: -1.00 -82.76 386.45 3.84 -78.92
By element:
Atomic # 1 Polarization: 2.18 SS G_CDS: 0.39 Total: 2.57 kcal
Atomic # 6 Polarization: 0.09 SS G_CDS: 8.36 Total: 8.45 kcal
Atomic # 7 Polarization: -116.08 SS G_CDS: -6.88 Total: -122.95 kcal
Atomic # 8 Polarization: -14.61 SS G_CDS: -0.07 Total: -14.67 kcal
Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal
Total: -82.76 3.84 -78.92 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001317431193.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 149.941 kcal
(2) G-P(sol) polarization free energy of solvation -82.760 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.180 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.838 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.922 kcal
(6) G-S(sol) free energy of system = (1) + (5) 71.019 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds