Wall clock time and date at job start Sat Apr 11 2020 06:57:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31619 * 1
3 3 Si 1.86808 * 119.99790 * 2 1
4 4 H 1.48502 * 109.46724 * 239.99864 * 3 2 1
5 5 H 1.48499 * 109.47083 * 359.97438 * 3 2 1
6 6 H 1.48501 * 109.46799 * 119.99850 * 3 2 1
7 7 C 1.38806 * 120.00009 * 179.97438 * 2 1 3
8 8 H 1.08003 * 120.00271 * 180.02562 * 7 2 1
9 9 N 1.36937 * 120.00114 * 0.02562 * 7 2 1
10 10 C 1.46505 * 120.00211 * 179.97438 * 9 7 2
11 11 C 1.52998 * 109.47106 * 175.03892 * 10 9 7
12 12 N 1.46499 * 109.47227 * 305.42247 * 11 10 9
13 13 C 1.34773 * 119.99998 * 303.92914 * 12 11 10
14 14 O 1.21710 * 119.99882 * 354.66831 * 13 12 11
15 15 C 1.46666 * 120.00042 * 174.66586 * 13 12 11
16 16 C 1.40328 * 126.56366 * 0.02562 * 15 13 12
17 17 N 1.31002 * 108.78410 * 179.97438 * 16 15 13
18 18 N 1.39900 * 109.55533 * 359.97438 * 17 16 15
19 19 N 1.40019 * 132.51442 * 180.28375 * 18 17 16
20 20 C 1.30839 * 120.65950 * 180.23189 * 19 18 17
21 21 C 1.39743 * 120.96912 * 359.45457 * 20 19 18
22 22 C 1.36555 * 119.94274 * 0.27584 * 21 20 19
23 23 C 1.36757 * 107.87782 * 0.02562 * 18 17 16
24 24 C 1.53003 * 109.46890 * 65.42237 * 11 10 9
25 25 C 1.52999 * 109.46820 * 179.97438 * 24 11 10
26 26 C 1.53001 * 109.47386 * 300.00058 * 25 24 11
27 27 C 1.52997 * 109.47109 * 59.99865 * 26 25 24
28 28 C 1.52994 * 109.47418 * 300.00384 * 27 26 25
29 29 H 0.97007 * 120.00017 * 359.97438 * 1 2 3
30 30 H 0.97000 * 119.99943 * 0.02562 * 9 7 2
31 31 H 1.08997 * 109.46674 * 55.03873 * 10 9 7
32 32 H 1.08999 * 109.46851 * 295.04036 * 10 9 7
33 33 H 0.96998 * 119.99681 * 123.93198 * 12 11 10
34 34 H 1.08001 * 125.60836 * 359.97438 * 16 15 13
35 35 H 1.07999 * 119.51694 * 179.73087 * 20 19 18
36 36 H 1.07998 * 120.02457 * 180.30006 * 21 20 19
37 37 H 1.07995 * 120.44901 * 179.97438 * 22 21 20
38 38 H 1.08996 * 109.47246 * 299.99990 * 24 11 10
39 39 H 1.09003 * 109.47128 * 59.99997 * 24 11 10
40 40 H 1.09003 * 109.46883 * 180.02562 * 25 24 11
41 41 H 1.09003 * 109.46954 * 60.00280 * 25 24 11
42 42 H 1.08996 * 109.46875 * 300.00008 * 26 25 24
43 43 H 1.09001 * 109.47143 * 180.02562 * 26 25 24
44 44 H 1.08996 * 109.47166 * 179.97438 * 27 26 25
45 45 H 1.09003 * 109.46922 * 59.99968 * 27 26 25
46 46 H 1.09003 * 109.46735 * 299.99699 * 28 27 26
47 47 H 1.08997 * 109.47597 * 180.02562 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.1039 1.6964 -1.2125
5 1 1.2851 2.7465 -0.0006
6 1 3.1039 1.6965 1.2125
7 6 2.0102 -1.2021 0.0005
8 1 3.0902 -1.2021 0.0010
9 7 1.3256 -2.3880 0.0005
10 6 2.0581 -3.6568 0.0005
11 6 1.0685 -4.8170 0.1253
12 7 0.2293 -4.6179 1.3095
13 6 0.7993 -4.4601 2.5205
14 8 2.0040 -4.5795 2.6463
15 6 -0.0321 -4.1445 3.6868
16 6 -1.4253 -3.9775 3.6997
17 7 -1.8062 -3.7050 4.9232
18 7 -0.6903 -3.6807 5.7666
19 7 -0.5470 -3.4479 7.1398
20 6 0.6341 -3.4775 7.7019
21 6 1.7807 -3.7527 6.9519
22 6 1.6774 -3.9900 5.6111
23 6 0.4150 -3.9521 5.0083
24 6 0.1850 -4.8701 -1.1228
25 6 -0.8041 -6.0307 -0.9983
26 6 -0.0334 -7.3455 -0.8626
27 6 0.8501 -7.2923 0.3853
28 6 1.8392 -6.1317 0.2609
29 1 -0.4850 0.8401 0.0004
30 1 0.3556 -2.3880 -0.0002
31 1 2.7497 -3.6769 0.8427
32 1 2.6164 -3.7539 -0.9305
33 1 -0.7365 -4.5997 1.2219
34 1 -2.0765 -4.0600 2.8420
35 1 0.7238 -3.2910 8.7619
36 1 2.7475 -3.7782 7.4324
37 1 2.5582 -4.2031 5.0236
38 1 -0.3637 -3.9334 -1.2197
39 1 0.8094 -5.0183 -2.0039
40 1 -1.4332 -6.0689 -1.8876
41 1 -1.4285 -5.8830 -0.1172
42 1 0.5910 -7.4931 -1.7438
43 1 -0.7381 -8.1723 -0.7744
44 1 1.3988 -8.2290 0.4822
45 1 0.2257 -7.1445 1.2665
46 1 2.4636 -6.2795 -0.6202
47 1 2.4689 -6.0941 1.1498
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001485448949.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:57:00
Heat of formation + Delta-G solvation = 110.762906 kcal
Electronic energy + Delta-G solvation = -31142.233087 eV
Core-core repulsion = 27135.105055 eV
Total energy + Delta-G solvation = -4007.128032 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 1.97 seconds
Orbital eigenvalues (eV)
-41.85097 -40.10920 -38.07607 -37.29585 -34.58696 -33.26263 -33.16209 -31.54227
-31.01654 -30.62546 -29.68512 -28.71010 -25.21873 -24.85051 -23.85134 -22.94575
-22.47764 -22.16864 -20.64451 -20.12765 -18.80005 -18.19656 -17.39915 -17.08987
-16.83234 -15.99654 -15.88452 -15.29976 -15.01646 -14.48045 -14.31494 -14.20355
-14.05670 -13.65953 -13.54303 -13.39184 -13.18432 -12.89269 -12.65250 -12.59212
-12.22619 -12.08451 -11.94796 -11.65225 -11.46284 -11.21917 -10.94020 -10.88127
-10.81783 -10.73775 -10.53933 -10.46420 -10.16318 -10.03940 -9.86665 -9.72672
-9.58778 -9.20563 -8.72651 -8.48723 -8.08875 -6.78445 -5.68660 -2.94142
0.15100 0.91291 1.33168 2.21095 2.91173 3.48114 3.52376 3.53025
3.54685 3.89084 4.09953 4.29005 4.42829 4.46554 4.66047 4.78496
4.90931 4.94133 4.98546 5.11851 5.15315 5.33723 5.40076 5.41760
5.64316 5.66966 5.70155 5.73166 5.75984 5.82171 5.87417 5.91322
5.97866 6.15558 6.19174 6.22810 6.27835 6.36165 6.39270 6.48015
6.56833 6.66153 6.73894 6.99159 7.20417 7.24305 7.34510 7.78428
8.03278 8.51164 8.75692 9.62475 10.21575 10.57164 11.54481
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.007134 B = 0.005222 C = 0.003515
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3923.668945 B = 5361.142586 C = 7964.617446
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.936 5.936
2 C -0.016 4.016
3 Si 0.903 3.097
4 H -0.287 1.287
5 H -0.292 1.292
6 H -0.288 1.288
7 C -0.228 4.228
8 H 0.067 0.933
9 N -0.724 5.724
10 C 0.140 3.860
11 C 0.181 3.819
12 N -0.702 5.702
13 C 0.609 3.391
14 O -0.543 6.543
15 C -0.251 4.251
16 C 0.097 3.903
17 N -0.255 5.255
18 N -0.174 5.174
19 N -0.220 5.220
20 C 0.116 3.884
21 C -0.169 4.169
22 C -0.016 4.016
23 C 0.102 3.898
24 C -0.120 4.120
25 C -0.119 4.119
26 C -0.118 4.118
27 C -0.113 4.113
28 C -0.127 4.127
29 H 0.253 0.747
30 H 0.382 0.618
31 H 0.049 0.951
32 H 0.018 0.982
33 H 0.393 0.607
34 H 0.205 0.795
35 H 0.205 0.795
36 H 0.158 0.842
37 H 0.171 0.829
38 H 0.080 0.920
39 H 0.075 0.925
40 H 0.061 0.939
41 H 0.058 0.942
42 H 0.060 0.940
43 H 0.055 0.945
44 H 0.055 0.945
45 H 0.059 0.941
46 H 0.065 0.935
47 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.047 -15.613 9.070 18.056
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.585 5.585
2 C -0.211 4.211
3 Si 0.734 3.266
4 H -0.214 1.214
5 H -0.218 1.218
6 H -0.215 1.215
7 C -0.359 4.359
8 H 0.085 0.915
9 N -0.368 5.368
10 C 0.011 3.989
11 C 0.095 3.905
12 N -0.353 5.353
13 C 0.396 3.604
14 O -0.422 6.422
15 C -0.267 4.267
16 C -0.084 4.084
17 N -0.080 5.080
18 N -0.041 5.041
19 N -0.032 5.032
20 C -0.076 4.076
21 C -0.194 4.194
22 C -0.044 4.044
23 C -0.024 4.024
24 C -0.158 4.158
25 C -0.157 4.157
26 C -0.156 4.156
27 C -0.151 4.151
28 C -0.166 4.166
29 H 0.063 0.937
30 H 0.216 0.784
31 H 0.067 0.933
32 H 0.036 0.964
33 H 0.227 0.773
34 H 0.222 0.778
35 H 0.221 0.779
36 H 0.176 0.824
37 H 0.188 0.812
38 H 0.098 0.902
39 H 0.094 0.906
40 H 0.080 0.920
41 H 0.077 0.923
42 H 0.078 0.922
43 H 0.074 0.926
44 H 0.073 0.927
45 H 0.078 0.922
46 H 0.084 0.916
47 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -1.146 -15.125 10.126 18.238
hybrid contribution 1.106 0.945 -0.832 1.676
sum -0.040 -14.181 9.295 16.955
Atomic orbital electron populations
1.69629 1.04950 1.25422 1.58505 1.24652 0.95476 0.97367 1.03595
0.86325 0.78535 0.83950 0.77758 1.21375 1.21832 1.21538 1.19165
0.90916 0.84247 1.41613 0.91534 1.42204 1.05597 0.99682 1.89317
1.21106 0.93720 0.85176 0.98855 1.20531 0.91101 0.95113 0.83758
1.45598 1.09582 1.73810 1.06290 1.16598 0.86525 0.75723 0.81564
1.90677 1.14242 1.51927 1.85315 1.19975 0.93716 1.20191 0.92861
1.24265 0.94327 0.94667 0.95095 1.77660 1.03325 1.26978 1.00022
1.50873 1.05259 1.44374 1.03626 1.75794 1.23912 1.16413 0.87130
1.24240 0.88111 0.93507 1.01782 1.21690 1.00632 1.02712 0.94370
1.21219 0.96403 0.92089 0.94642 1.19729 0.89687 1.00577 0.92408
1.21793 0.97974 0.99038 0.97002 1.21559 0.97875 0.94809 1.01455
1.21545 0.98485 0.97143 0.98388 1.21452 0.97804 0.97937 0.97901
1.21903 0.98094 0.93274 1.03299 0.93730 0.78429 0.93315 0.96434
0.77284 0.77817 0.77902 0.82438 0.81155 0.90178 0.90596 0.91997
0.92286 0.92155 0.92641 0.92672 0.92195 0.91596 0.89796
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 35.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -28.37 13.06 55.49 0.72 -27.65 16
2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16
3 Si 0.90 23.09 29.55 -169.99 -5.02 18.06 16
4 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16
5 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16
6 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16
7 C -0.23 -6.50 9.99 -15.06 -0.15 -6.65 16
8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16
9 N -0.72 -18.17 5.19 -59.91 -0.31 -18.48 16
10 C 0.14 2.91 4.79 -4.04 -0.02 2.89 16
11 C 0.18 2.87 0.32 -131.82 -0.04 2.83 16
12 N -0.70 -10.90 3.57 -48.90 -0.17 -11.07 16
13 C 0.61 10.68 7.19 -12.86 -0.09 10.58 16
14 O -0.54 -10.61 12.07 5.18 0.06 -10.55 16
15 C -0.25 -4.19 6.16 -104.73 -0.65 -4.83 16
16 C 0.10 1.47 11.44 -17.12 -0.20 1.27 16
17 N -0.26 -4.32 12.61 30.75 0.39 -3.93 16
18 N -0.17 -2.87 5.25 32.44 0.17 -2.70 16
19 N -0.22 -3.04 11.96 30.60 0.37 -2.67 16
20 C 0.12 1.04 11.28 -17.41 -0.20 0.85 16
21 C -0.17 -1.51 10.04 -39.63 -0.40 -1.90 16
22 C -0.02 -0.20 9.75 -39.55 -0.39 -0.59 16
23 C 0.10 1.64 6.83 -84.05 -0.57 1.07 16
24 C -0.12 -1.71 4.67 -26.73 -0.12 -1.83 16
25 C -0.12 -1.33 5.75 -26.73 -0.15 -1.49 16
26 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16
27 C -0.11 -1.32 5.77 -26.74 -0.15 -1.48 16
28 C -0.13 -1.78 4.57 -26.73 -0.12 -1.91 16
29 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16
30 H 0.38 9.83 6.46 -40.82 -0.26 9.57 16
31 H 0.05 1.13 6.25 -51.93 -0.32 0.80 16
32 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16
33 H 0.39 5.26 6.14 -40.82 -0.25 5.01 16
34 H 0.21 2.29 7.47 -52.49 -0.39 1.90 16
35 H 0.20 0.76 8.06 -52.49 -0.42 0.34 16
36 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16
37 H 0.17 2.18 7.18 -52.49 -0.38 1.80 16
38 H 0.08 1.32 7.10 -51.93 -0.37 0.95 16
39 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16
40 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16
41 H 0.06 0.62 6.79 -51.93 -0.35 0.27 16
42 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16
43 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16
44 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16
45 H 0.06 0.73 7.61 -51.93 -0.39 0.34 16
46 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16
47 H 0.08 1.35 6.28 -51.93 -0.33 1.02 16
LS Contribution 375.07 15.07 5.65 5.65
Total: -1.00 -36.55 375.07 -8.06 -44.60
By element:
Atomic # 1 Polarization: 18.27 SS G_CDS: -6.40 Total: 11.87 kcal
Atomic # 6 Polarization: 0.38 SS G_CDS: -3.51 Total: -3.13 kcal
Atomic # 7 Polarization: -67.67 SS G_CDS: 1.16 Total: -66.50 kcal
Atomic # 8 Polarization: -10.61 SS G_CDS: 0.06 Total: -10.55 kcal
Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.06 kcal
Total LS contribution 5.65 Total: 5.65 kcal
Total: -36.55 -8.06 -44.60 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001485448949.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 155.363 kcal
(2) G-P(sol) polarization free energy of solvation -36.545 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.818 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.601 kcal
(6) G-S(sol) free energy of system = (1) + (5) 110.763 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.97 seconds