Wall clock time and date at job start Sat Apr 11 2020 06:56:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31619 * 1
3 3 Si 1.86808 * 119.99790 * 2 1
4 4 H 1.48502 * 109.46724 * 239.99864 * 3 2 1
5 5 H 1.48499 * 109.47083 * 359.97438 * 3 2 1
6 6 H 1.48501 * 109.46799 * 119.99850 * 3 2 1
7 7 C 1.38806 * 120.00009 * 179.97438 * 2 1 3
8 8 H 1.08003 * 120.00271 * 180.02562 * 7 2 1
9 9 N 1.36937 * 120.00114 * 0.02562 * 7 2 1
10 10 C 1.46505 * 120.00211 * 179.97438 * 9 7 2
11 11 C 1.52998 * 109.47106 * 175.03892 * 10 9 7
12 12 N 1.46499 * 109.47227 * 305.42247 * 11 10 9
13 13 C 1.34773 * 119.99998 * 303.92914 * 12 11 10
14 14 O 1.21710 * 119.99882 * 354.66831 * 13 12 11
15 15 C 1.46666 * 120.00042 * 174.66586 * 13 12 11
16 16 C 1.40328 * 126.56366 * 0.02562 * 15 13 12
17 17 N 1.31002 * 108.78410 * 179.97438 * 16 15 13
18 18 N 1.39900 * 109.55533 * 359.97438 * 17 16 15
19 19 N 1.40019 * 132.51442 * 180.28375 * 18 17 16
20 20 C 1.30839 * 120.65950 * 180.23189 * 19 18 17
21 21 C 1.39743 * 120.96912 * 359.45457 * 20 19 18
22 22 C 1.36555 * 119.94274 * 0.27584 * 21 20 19
23 23 C 1.36757 * 107.87782 * 0.02562 * 18 17 16
24 24 C 1.53003 * 109.46890 * 65.42237 * 11 10 9
25 25 C 1.52999 * 109.46820 * 179.97438 * 24 11 10
26 26 C 1.53001 * 109.47386 * 300.00058 * 25 24 11
27 27 C 1.52997 * 109.47109 * 59.99865 * 26 25 24
28 28 C 1.52994 * 109.47418 * 300.00384 * 27 26 25
29 29 H 0.97007 * 120.00017 * 359.97438 * 1 2 3
30 30 H 0.97000 * 119.99943 * 0.02562 * 9 7 2
31 31 H 1.08997 * 109.46674 * 55.03873 * 10 9 7
32 32 H 1.08999 * 109.46851 * 295.04036 * 10 9 7
33 33 H 0.96998 * 119.99681 * 123.93198 * 12 11 10
34 34 H 1.08001 * 125.60836 * 359.97438 * 16 15 13
35 35 H 1.07999 * 119.51694 * 179.73087 * 20 19 18
36 36 H 1.07998 * 120.02457 * 180.30006 * 21 20 19
37 37 H 1.07995 * 120.44901 * 179.97438 * 22 21 20
38 38 H 1.08996 * 109.47246 * 299.99990 * 24 11 10
39 39 H 1.09003 * 109.47128 * 59.99997 * 24 11 10
40 40 H 1.09003 * 109.46883 * 180.02562 * 25 24 11
41 41 H 1.09003 * 109.46954 * 60.00280 * 25 24 11
42 42 H 1.08996 * 109.46875 * 300.00008 * 26 25 24
43 43 H 1.09001 * 109.47143 * 180.02562 * 26 25 24
44 44 H 1.08996 * 109.47166 * 179.97438 * 27 26 25
45 45 H 1.09003 * 109.46922 * 59.99968 * 27 26 25
46 46 H 1.09003 * 109.46735 * 299.99699 * 28 27 26
47 47 H 1.08997 * 109.47597 * 180.02562 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.1039 1.6964 -1.2125
5 1 1.2851 2.7465 -0.0006
6 1 3.1039 1.6965 1.2125
7 6 2.0102 -1.2021 0.0005
8 1 3.0902 -1.2021 0.0010
9 7 1.3256 -2.3880 0.0005
10 6 2.0581 -3.6568 0.0005
11 6 1.0685 -4.8170 0.1253
12 7 0.2293 -4.6179 1.3095
13 6 0.7993 -4.4601 2.5205
14 8 2.0040 -4.5795 2.6463
15 6 -0.0321 -4.1445 3.6868
16 6 -1.4253 -3.9775 3.6997
17 7 -1.8062 -3.7050 4.9232
18 7 -0.6903 -3.6807 5.7666
19 7 -0.5470 -3.4479 7.1398
20 6 0.6341 -3.4775 7.7019
21 6 1.7807 -3.7527 6.9519
22 6 1.6774 -3.9900 5.6111
23 6 0.4150 -3.9521 5.0083
24 6 0.1850 -4.8701 -1.1228
25 6 -0.8041 -6.0307 -0.9983
26 6 -0.0334 -7.3455 -0.8626
27 6 0.8501 -7.2923 0.3853
28 6 1.8392 -6.1317 0.2609
29 1 -0.4850 0.8401 0.0004
30 1 0.3556 -2.3880 -0.0002
31 1 2.7497 -3.6769 0.8427
32 1 2.6164 -3.7539 -0.9305
33 1 -0.7365 -4.5997 1.2219
34 1 -2.0765 -4.0600 2.8420
35 1 0.7238 -3.2910 8.7619
36 1 2.7475 -3.7782 7.4324
37 1 2.5582 -4.2031 5.0236
38 1 -0.3637 -3.9334 -1.2197
39 1 0.8094 -5.0183 -2.0039
40 1 -1.4332 -6.0689 -1.8876
41 1 -1.4285 -5.8830 -0.1172
42 1 0.5910 -7.4931 -1.7438
43 1 -0.7381 -8.1723 -0.7744
44 1 1.3988 -8.2290 0.4822
45 1 0.2257 -7.1445 1.2665
46 1 2.4636 -6.2795 -0.6202
47 1 2.4689 -6.0941 1.1498
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001485448949.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:56:59
Heat of formation + Delta-G solvation = 85.044751 kcal
Electronic energy + Delta-G solvation = -31143.348310 eV
Core-core repulsion = 27135.105055 eV
Total energy + Delta-G solvation = -4008.243255 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-42.93831 -41.37584 -39.09683 -38.50738 -36.35241 -34.61499 -34.25488 -33.19457
-32.21396 -31.70012 -31.14612 -29.94861 -26.99118 -25.81651 -24.95709 -24.63083
-23.61369 -23.37410 -21.92879 -21.27129 -20.03326 -19.32514 -19.19676 -18.33442
-17.89085 -17.01199 -16.93126 -16.74189 -16.45697 -16.07296 -15.67437 -15.36175
-15.21139 -15.09356 -14.87284 -14.63769 -14.43419 -14.37658 -13.81356 -13.61017
-13.58506 -13.37789 -13.10879 -12.98899 -12.82761 -12.72993 -12.58206 -12.50424
-12.13322 -11.96792 -11.90206 -11.85062 -11.53612 -11.40331 -11.12038 -11.06498
-10.94873 -10.81125 -10.41748 -9.83009 -9.22659 -8.90496 -7.93191 -5.18029
-0.80830 -0.04475 0.32060 1.02168 1.42318 1.44989 1.50966 1.97138
2.29077 2.55134 2.62281 3.15526 3.34504 3.39894 3.44642 3.60607
3.73247 3.89478 3.92492 3.94702 4.08633 4.15015 4.29128 4.30576
4.32919 4.52009 4.58643 4.65975 4.68066 4.82351 4.86070 4.91194
4.92292 4.97118 5.09954 5.16240 5.17513 5.22412 5.25488 5.30994
5.36606 5.43652 5.47771 5.55693 5.58498 5.82441 6.14881 6.29248
6.34429 6.76864 7.36776 7.45304 8.13992 8.41431 9.29502
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.007134 B = 0.005222 C = 0.003515
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3923.668945 B = 5361.142586 C = 7964.617446
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.963 5.963
2 C -0.070 4.070
3 Si 0.964 3.036
4 H -0.277 1.277
5 H -0.293 1.293
6 H -0.286 1.286
7 C -0.238 4.238
8 H 0.063 0.937
9 N -0.727 5.727
10 C 0.140 3.860
11 C 0.187 3.813
12 N -0.695 5.695
13 C 0.605 3.395
14 O -0.572 6.572
15 C -0.292 4.292
16 C 0.103 3.897
17 N -0.291 5.291
18 N -0.189 5.189
19 N -0.258 5.258
20 C 0.133 3.867
21 C -0.124 4.124
22 C -0.061 4.061
23 C 0.096 3.904
24 C -0.114 4.114
25 C -0.114 4.114
26 C -0.112 4.112
27 C -0.107 4.107
28 C -0.120 4.120
29 H 0.249 0.751
30 H 0.377 0.623
31 H 0.024 0.976
32 H 0.017 0.983
33 H 0.403 0.597
34 H 0.231 0.769
35 H 0.265 0.735
36 H 0.211 0.789
37 H 0.164 0.836
38 H 0.053 0.947
39 H 0.078 0.922
40 H 0.077 0.923
41 H 0.065 0.935
42 H 0.067 0.933
43 H 0.076 0.924
44 H 0.069 0.931
45 H 0.053 0.947
46 H 0.074 0.926
47 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.520 -16.563 10.442 19.586
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.614 5.614
2 C -0.263 4.263
3 Si 0.793 3.207
4 H -0.203 1.203
5 H -0.220 1.220
6 H -0.213 1.213
7 C -0.370 4.370
8 H 0.081 0.919
9 N -0.370 5.370
10 C 0.013 3.987
11 C 0.101 3.899
12 N -0.346 5.346
13 C 0.394 3.606
14 O -0.453 6.453
15 C -0.308 4.308
16 C -0.077 4.077
17 N -0.116 5.116
18 N -0.055 5.055
19 N -0.070 5.070
20 C -0.058 4.058
21 C -0.148 4.148
22 C -0.089 4.089
23 C -0.031 4.031
24 C -0.152 4.152
25 C -0.151 4.151
26 C -0.150 4.150
27 C -0.145 4.145
28 C -0.159 4.159
29 H 0.058 0.942
30 H 0.210 0.790
31 H 0.042 0.958
32 H 0.035 0.965
33 H 0.239 0.761
34 H 0.247 0.753
35 H 0.281 0.719
36 H 0.228 0.772
37 H 0.181 0.819
38 H 0.072 0.928
39 H 0.097 0.903
40 H 0.096 0.904
41 H 0.083 0.917
42 H 0.085 0.915
43 H 0.095 0.905
44 H 0.088 0.912
45 H 0.071 0.929
46 H 0.092 0.908
47 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -0.590 -16.105 11.487 19.790
hybrid contribution 1.099 1.246 -1.036 1.958
sum 0.509 -14.859 10.451 18.173
Atomic orbital electron populations
1.69774 1.06138 1.25723 1.59757 1.25380 0.96367 1.00395 1.04152
0.85354 0.77362 0.79978 0.77960 1.20260 1.21953 1.21289 1.19479
0.91037 0.85739 1.40736 0.91934 1.42275 1.05444 1.00313 1.88988
1.21174 0.94499 0.85548 0.97489 1.20429 0.90723 0.93922 0.84790
1.45518 1.10064 1.73282 1.05686 1.16823 0.86331 0.75249 0.82227
1.90644 1.15401 1.53450 1.85845 1.20024 0.94419 1.23221 0.93179
1.24664 0.94205 0.93391 0.95459 1.77516 1.04655 1.28745 1.00697
1.51059 1.04968 1.44760 1.04676 1.75858 1.26739 1.18527 0.85914
1.25390 0.86525 0.89896 1.03981 1.22345 1.02864 0.97161 0.92454
1.21371 0.95037 0.95786 0.96703 1.20182 0.90916 0.99538 0.92511
1.21716 0.98147 0.99375 0.95934 1.21543 0.97266 0.93752 1.02575
1.21519 0.98577 0.97147 0.97716 1.21409 0.97373 0.97162 0.98514
1.21820 0.98353 0.93215 1.02539 0.94236 0.78982 0.95810 0.96497
0.76136 0.75260 0.71939 0.77245 0.81884 0.92785 0.90343 0.90403
0.91651 0.91455 0.90515 0.91243 0.92855 0.90776 0.92120
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.96 -59.60 13.06 21.65 0.28 -59.32 16
2 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16
3 Si 0.96 48.05 29.55 68.60 2.03 50.08 16
4 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16
5 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16
6 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16
7 C -0.24 -13.91 9.99 84.03 0.84 -13.07 16
8 H 0.06 3.63 7.83 -2.91 -0.02 3.61 16
9 N -0.73 -37.85 5.19 -343.45 -1.78 -39.63 16
10 C 0.14 6.10 4.79 86.38 0.41 6.52 16
11 C 0.19 6.10 0.32 3.60 0.00 6.11 16
12 N -0.69 -22.42 3.57 -426.84 -1.52 -23.94 16
13 C 0.61 22.42 7.19 86.44 0.62 23.05 16
14 O -0.57 -23.78 12.07 -4.38 -0.05 -23.84 16
15 C -0.29 -10.29 6.16 -19.93 -0.12 -10.41 16
16 C 0.10 3.28 11.44 85.33 0.98 4.25 16
17 N -0.29 -10.26 12.61 -56.63 -0.71 -10.98 16
18 N -0.19 -6.35 5.25 -51.28 -0.27 -6.62 16
19 N -0.26 -6.78 11.96 -57.11 -0.68 -7.46 16
20 C 0.13 1.90 11.28 85.20 0.96 2.86 16
21 C -0.12 -1.78 10.04 22.24 0.22 -1.56 16
22 C -0.06 -1.58 9.75 22.29 0.22 -1.36 16
23 C 0.10 3.19 6.83 39.42 0.27 3.46 16
24 C -0.11 -3.22 4.67 30.59 0.14 -3.08 16
25 C -0.11 -2.34 5.75 30.59 0.18 -2.17 16
26 C -0.11 -2.05 5.92 30.59 0.18 -1.87 16
27 C -0.11 -2.35 5.77 30.59 0.18 -2.17 16
28 C -0.12 -3.40 4.57 30.59 0.14 -3.26 16
29 H 0.25 15.05 8.31 -92.70 -0.77 14.28 16
30 H 0.38 20.18 6.46 -92.71 -0.60 19.58 16
31 H 0.02 1.17 6.25 -2.39 -0.01 1.15 16
32 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16
33 H 0.40 11.13 6.14 -92.71 -0.57 10.56 16
34 H 0.23 5.40 7.47 -2.91 -0.02 5.38 16
35 H 0.27 0.32 8.06 -2.91 -0.02 0.30 16
36 H 0.21 0.82 8.06 -2.91 -0.02 0.80 16
37 H 0.16 4.34 7.18 -2.91 -0.02 4.32 16
38 H 0.05 1.82 7.10 -2.39 -0.02 1.81 16
39 H 0.08 2.16 8.14 -2.39 -0.02 2.15 16
40 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16
41 H 0.06 1.27 6.79 -2.39 -0.02 1.26 16
42 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16
43 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16
44 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16
45 H 0.05 1.26 7.61 -2.39 -0.02 1.24 16
46 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16
47 H 0.06 2.02 6.28 -2.39 -0.01 2.00 16
Total: -1.00 -84.57 375.07 2.82 -81.75
By element:
Atomic # 1 Polarization: 36.51 SS G_CDS: -0.15 Total: 36.36 kcal
Atomic # 6 Polarization: -2.09 SS G_CDS: 5.68 Total: 3.59 kcal
Atomic # 7 Polarization: -143.26 SS G_CDS: -4.69 Total: -147.95 kcal
Atomic # 8 Polarization: -23.78 SS G_CDS: -0.05 Total: -23.84 kcal
Atomic # 14 Polarization: 48.05 SS G_CDS: 2.03 Total: 50.08 kcal
Total: -84.57 2.82 -81.75 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001485448949.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 166.791 kcal
(2) G-P(sol) polarization free energy of solvation -84.570 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.221 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.824 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.746 kcal
(6) G-S(sol) free energy of system = (1) + (5) 85.045 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds