Wall clock time and date at job start Sat Apr 11 2020 06:55:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31622 * 1
3 3 Si 1.86796 * 120.00028 * 2 1
4 4 H 1.48499 * 109.47039 * 90.00023 * 3 2 1
5 5 H 1.48499 * 109.47538 * 210.00250 * 3 2 1
6 6 H 1.48503 * 109.47346 * 330.00647 * 3 2 1
7 7 C 1.38808 * 120.00278 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99947 * 359.97438 * 7 2 1
9 9 N 1.36929 * 120.00209 * 179.97438 * 7 2 1
10 10 C 1.46501 * 120.00204 * 179.97438 * 9 7 2
11 11 C 1.52998 * 109.47459 * 179.97438 * 10 9 7
12 12 C 1.53000 * 109.47363 * 174.89303 * 11 10 9
13 13 H 1.08995 * 109.59131 * 298.48768 * 12 11 10
14 14 C 1.53199 * 109.58175 * 58.77143 * 12 11 10
15 15 C 1.53044 * 109.31146 * 174.42049 * 14 12 11
16 16 C 1.53042 * 109.53665 * 298.63516 * 15 14 12
17 17 C 1.53189 * 109.31548 * 61.36603 * 16 15 14
18 18 N 1.46925 * 109.58876 * 178.05728 * 12 11 10
19 19 C 1.34783 * 120.62988 * 6.60636 * 18 12 11
20 20 O 1.21592 * 119.99672 * 2.56921 * 19 18 12
21 21 C 1.47582 * 119.99864 * 182.56425 * 19 18 12
22 22 C 1.41512 * 120.56579 * 326.57222 * 21 19 18
23 23 N 1.30909 * 120.16325 * 179.71729 * 22 21 19
24 24 C 1.34257 * 121.27313 * 0.56049 * 23 22 21
25 25 N 1.32426 * 131.63330 * 179.75267 * 24 23 22
26 26 C 1.33700 * 109.32545 * 179.97438 * 25 24 23
27 27 C 1.34914 * 108.65367 * 359.97438 * 26 25 24
28 28 N 1.37002 * 107.05583 * 0.02562 * 27 26 25
29 29 C 1.35972 * 132.54973 * 180.02562 * 28 27 26
30 30 H 0.97003 * 120.00107 * 359.97438 * 1 2 3
31 31 H 0.97005 * 120.00471 * 359.97438 * 9 7 2
32 32 H 1.09000 * 109.47649 * 300.00176 * 10 9 7
33 33 H 1.09010 * 109.47200 * 59.99981 * 10 9 7
34 34 H 1.08998 * 109.47561 * 294.89786 * 11 10 9
35 35 H 1.09007 * 109.47159 * 54.89703 * 11 10 9
36 36 H 1.08994 * 109.49759 * 294.36982 * 14 12 11
37 37 H 1.09001 * 109.49732 * 54.47189 * 14 12 11
38 38 H 1.09003 * 109.45989 * 58.65254 * 15 14 12
39 39 H 1.09000 * 109.46033 * 178.61280 * 15 14 12
40 40 H 1.09000 * 109.49731 * 181.31559 * 16 15 14
41 41 H 1.08997 * 109.49804 * 301.40900 * 16 15 14
42 42 H 1.09004 * 109.59031 * 65.14891 * 17 16 15
43 43 H 1.09000 * 109.58898 * 185.43414 * 17 16 15
44 44 H 1.07992 * 119.92185 * 359.97438 * 22 21 19
45 45 H 1.07990 * 125.67601 * 180.02562 * 26 25 24
46 46 H 1.08002 * 126.47112 * 180.02562 * 27 26 25
47 47 H 1.08002 * 120.57952 * 359.93868 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4977 2.0464 1.4001
5 1 3.5477 1.4402 -0.7001
6 1 1.4476 2.6527 -0.6999
7 6 2.0103 -1.2021 -0.0005
8 1 1.4703 -2.1374 -0.0005
9 7 3.3796 -1.2021 -0.0011
10 6 4.1122 -2.4708 -0.0011
11 6 5.6164 -2.1912 -0.0024
12 6 6.3805 -3.5105 0.1260
13 1 6.1248 -3.9905 1.0706
14 6 6.0078 -4.4350 -1.0373
15 6 6.8762 -5.6940 -0.9815
16 6 8.3496 -5.3062 -1.1255
17 6 8.7489 -4.3917 0.0367
18 7 7.8256 -3.2495 0.0784
19 6 8.2954 -1.9862 0.0728
20 8 7.5235 -1.0502 0.1546
21 6 9.7465 -1.7391 -0.0324
22 6 10.6734 -2.6370 0.5483
23 7 11.9591 -2.4130 0.4455
24 6 12.4290 -1.3317 -0.1968
25 7 13.6637 -0.9070 -0.4174
26 6 13.6215 0.2345 -1.1123
27 6 12.3306 0.5509 -1.3444
28 7 11.5668 -0.4311 -0.7706
29 6 10.2231 -0.6245 -0.6948
30 1 -0.4850 0.8401 0.0004
31 1 3.8647 -0.3620 -0.0014
32 1 3.8493 -3.0422 0.8891
33 1 3.8485 -3.0426 -0.8909
34 1 5.8939 -1.6999 -0.9349
35 1 5.8663 -1.5434 0.8380
36 1 4.9572 -4.7140 -0.9581
37 1 6.1773 -3.9178 -1.9817
38 1 6.7249 -6.1975 -0.0266
39 1 6.5961 -6.3647 -1.7938
40 1 8.9657 -6.2053 -1.1091
41 1 8.4970 -4.7809 -2.0691
42 1 8.6886 -4.9445 0.9742
43 1 9.7681 -4.0351 -0.1123
44 1 10.3194 -3.5113 1.0741
45 1 14.4781 0.8075 -1.4350
46 1 11.9679 1.4150 -1.8811
47 1 9.5402 0.0813 -1.1443
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001496403144.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:55:23
Heat of formation + Delta-G solvation = 102.601741 kcal
Electronic energy + Delta-G solvation = -30050.436880 eV
Core-core repulsion = 26042.954953 eV
Total energy + Delta-G solvation = -4007.481926 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-44.19398 -41.91224 -39.34627 -38.50773 -37.12595 -35.80791 -34.79659 -33.96955
-32.99955 -31.87938 -30.47276 -29.55034 -26.95988 -26.27522 -25.44103 -24.73634
-23.79734 -22.99247 -22.26797 -22.05138 -20.52030 -19.93995 -19.55832 -18.90589
-17.58528 -17.49646 -17.24922 -16.90360 -16.62633 -16.31658 -15.83296 -15.62887
-15.51000 -15.23913 -15.03975 -14.87965 -14.79701 -14.51559 -14.39755 -14.17619
-14.02019 -13.75311 -13.51145 -13.06053 -13.01776 -12.83271 -12.79849 -12.28061
-12.11445 -11.91452 -11.89830 -11.82220 -11.71041 -11.49949 -11.36230 -11.11115
-10.97324 -10.40817 -10.17214 -9.63223 -9.33890 -9.29000 -8.04699 -5.37006
-0.82857 -0.36727 1.03256 1.36015 1.37970 1.38420 1.46096 1.74926
1.86522 2.34032 2.43271 2.46416 2.98126 3.19718 3.26689 3.32461
3.54851 3.66667 3.80396 3.91237 3.95609 4.07352 4.10716 4.23860
4.26490 4.34172 4.37904 4.43336 4.48095 4.51648 4.67539 4.70847
4.83178 4.90341 4.92043 4.97017 5.10299 5.18511 5.26027 5.27234
5.38001 5.39669 5.43138 5.51461 5.64415 5.74172 6.20323 6.26620
6.27849 6.73256 6.98338 7.06470 7.84957 8.03045 9.16852
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.011934 B = 0.002963 C = 0.002441
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2345.594298 B = 9448.938714 C =11467.111574
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.983 5.983
2 C -0.064 4.064
3 Si 0.953 3.047
4 H -0.279 1.279
5 H -0.259 1.259
6 H -0.291 1.291
7 C -0.233 4.233
8 H 0.060 0.940
9 N -0.761 5.761
10 C 0.148 3.852
11 C -0.102 4.102
12 C 0.159 3.841
13 H 0.093 0.907
14 C -0.132 4.132
15 C -0.117 4.117
16 C -0.131 4.131
17 C 0.072 3.928
18 N -0.590 5.590
19 C 0.572 3.428
20 O -0.552 6.552
21 C -0.224 4.224
22 C 0.193 3.807
23 N -0.461 5.461
24 C 0.353 3.647
25 N -0.508 5.508
26 C 0.038 3.962
27 C -0.080 4.080
28 N -0.406 5.406
29 C 0.184 3.816
30 H 0.258 0.742
31 H 0.363 0.637
32 H 0.026 0.974
33 H 0.028 0.972
34 H 0.054 0.946
35 H 0.074 0.926
36 H 0.075 0.925
37 H 0.054 0.946
38 H 0.080 0.920
39 H 0.072 0.928
40 H 0.103 0.897
41 H 0.055 0.945
42 H 0.110 0.890
43 H 0.109 0.891
44 H 0.231 0.769
45 H 0.223 0.777
46 H 0.229 0.771
47 H 0.203 0.797
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 29.555 -8.895 -3.324 31.043
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.633 5.633
2 C -0.255 4.255
3 Si 0.781 3.219
4 H -0.205 1.205
5 H -0.184 1.184
6 H -0.218 1.218
7 C -0.364 4.364
8 H 0.078 0.922
9 N -0.407 5.407
10 C 0.022 3.978
11 C -0.140 4.140
12 C 0.056 3.944
13 H 0.111 0.889
14 C -0.170 4.170
15 C -0.154 4.154
16 C -0.169 4.169
17 C -0.048 4.048
18 N -0.322 5.322
19 C 0.359 3.641
20 O -0.431 6.431
21 C -0.233 4.233
22 C 0.006 3.994
23 N -0.173 5.173
24 C 0.005 3.995
25 N -0.231 5.231
26 C -0.111 4.111
27 C -0.209 4.209
28 N -0.083 5.083
29 C 0.050 3.950
30 H 0.067 0.933
31 H 0.196 0.804
32 H 0.044 0.956
33 H 0.046 0.954
34 H 0.073 0.927
35 H 0.092 0.908
36 H 0.094 0.906
37 H 0.073 0.927
38 H 0.098 0.902
39 H 0.091 0.909
40 H 0.121 0.879
41 H 0.074 0.926
42 H 0.128 0.872
43 H 0.126 0.874
44 H 0.246 0.754
45 H 0.240 0.760
46 H 0.245 0.755
47 H 0.219 0.781
Dipole moment (debyes) X Y Z Total
from point charges 30.538 -9.323 -2.766 32.049
hybrid contribution -1.537 2.201 -0.706 2.776
sum 29.001 -7.121 -3.472 30.064
Atomic orbital electron populations
1.69874 1.06919 1.26652 1.59894 1.25468 0.96137 1.01084 1.02823
0.85425 0.78419 0.79963 0.78096 1.20535 1.18409 1.21785 1.19088
0.82673 0.93610 1.41024 0.92167 1.42794 1.02572 1.04432 1.90872
1.20990 0.91476 0.87171 0.98171 1.22064 0.92084 0.96743 1.03130
1.21230 0.77899 0.95150 1.00079 0.88896 1.22036 1.00999 0.96631
0.97374 1.21537 0.94257 0.96128 1.03487 1.21917 0.96994 1.00251
0.97730 1.22932 0.93572 0.86714 1.01631 1.48034 1.07429 1.05277
1.71443 1.17719 0.86127 0.83392 0.76869 1.90964 1.57031 1.44294
1.50846 1.20611 0.95754 0.98846 1.08094 1.24413 0.85338 0.97126
0.92521 1.67904 1.16747 1.15632 1.16969 1.22363 0.86928 0.90535
0.99699 1.70684 1.16927 1.14654 1.20882 1.23348 0.97753 0.92910
0.97059 1.23556 0.91036 0.97612 1.08678 1.44117 1.06650 1.20651
1.36908 1.22803 0.82842 0.96238 0.93150 0.93288 0.80438 0.95612
0.95431 0.92737 0.90802 0.90620 0.92718 0.90165 0.90888 0.87893
0.92571 0.87178 0.87351 0.75370 0.76030 0.75497 0.78058
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.98 -64.30 13.97 21.65 0.30 -64.00 16
2 C -0.06 -3.88 5.50 84.86 0.47 -3.42 16
3 Si 0.95 47.71 27.74 68.60 1.90 49.62 16
4 H -0.28 -13.66 7.11 99.48 0.71 -12.96 16
5 H -0.26 -12.11 6.52 99.48 0.65 -11.46 16
6 H -0.29 -14.47 7.11 99.48 0.71 -13.77 16
7 C -0.23 -13.81 10.47 84.03 0.88 -12.93 16
8 H 0.06 3.84 8.06 -2.91 -0.02 3.82 16
9 N -0.76 -37.91 5.41 -343.45 -1.86 -39.76 16
10 C 0.15 5.75 5.73 86.38 0.49 6.25 16
11 C -0.10 -3.21 3.28 30.59 0.10 -3.11 16
12 C 0.16 3.37 3.03 44.98 0.14 3.51 16
13 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16
14 C -0.13 -2.46 4.81 30.68 0.15 -2.32 16
15 C -0.12 -1.34 5.88 30.62 0.18 -1.16 16
16 C -0.13 -1.13 6.08 30.67 0.19 -0.94 16
17 C 0.07 0.62 4.96 86.36 0.43 1.05 16
18 N -0.59 -9.96 2.97 -798.67 -2.37 -12.33 16
19 C 0.57 12.01 7.33 86.71 0.64 12.65 16
20 O -0.55 -16.30 12.28 -4.00 -0.05 -16.35 16
21 C -0.22 -3.77 5.52 -20.03 -0.11 -3.88 16
22 C 0.19 2.82 8.70 85.64 0.74 3.56 16
23 N -0.46 -9.72 10.45 -197.51 -2.06 -11.78 16
24 C 0.35 8.15 8.91 261.29 2.33 10.48 16
25 N -0.51 -12.14 11.31 -199.52 -2.26 -14.40 16
26 C 0.04 0.58 11.82 83.64 0.99 1.56 16
27 C -0.08 -1.02 11.76 83.12 0.98 -0.04 16
28 N -0.41 -7.24 2.94 -355.66 -1.04 -8.29 16
29 C 0.18 3.01 10.67 84.03 0.90 3.91 16
30 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16
31 H 0.36 17.83 5.53 -92.70 -0.51 17.32 16
32 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16
33 H 0.03 1.06 6.84 -2.38 -0.02 1.05 16
34 H 0.05 1.87 7.14 -2.39 -0.02 1.85 16
35 H 0.07 2.62 6.33 -2.38 -0.02 2.60 16
36 H 0.08 1.58 6.86 -2.39 -0.02 1.56 16
37 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16
38 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16
39 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16
40 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16
41 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16
42 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16
43 H 0.11 0.77 3.51 -3.25 -0.01 0.76 16
44 H 0.23 1.64 5.42 -2.91 -0.02 1.62 16
45 H 0.22 1.49 8.06 -2.92 -0.02 1.47 16
46 H 0.23 0.94 8.06 -2.91 -0.02 0.91 16
47 H 0.20 2.62 7.99 -2.91 -0.02 2.59 16
Total: -1.00 -85.13 369.48 2.48 -82.65
By element:
Atomic # 1 Polarization: 19.03 SS G_CDS: 0.44 Total: 19.47 kcal
Atomic # 6 Polarization: 5.70 SS G_CDS: 9.48 Total: 15.18 kcal
Atomic # 7 Polarization: -141.27 SS G_CDS: -9.29 Total: -150.56 kcal
Atomic # 8 Polarization: -16.30 SS G_CDS: -0.05 Total: -16.35 kcal
Atomic # 14 Polarization: 47.71 SS G_CDS: 1.90 Total: 49.62 kcal
Total: -85.13 2.48 -82.65 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001496403144.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 185.249 kcal
(2) G-P(sol) polarization free energy of solvation -85.128 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.121 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.481 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.647 kcal
(6) G-S(sol) free energy of system = (1) + (5) 102.602 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds