Wall clock time and date at job start Sat Apr 11 2020 06:57:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 C 1.38849 * 125.50274 * 2 1
4 4 C 1.38709 * 107.67180 * 179.97438 * 3 2 1
5 5 N 1.34150 * 132.24723 * 180.02562 * 4 3 2
6 6 C 1.30901 * 121.16702 * 179.97438 * 5 4 3
7 7 C 1.41542 * 120.07323 * 359.97181 * 6 5 4
8 8 C 1.47601 * 120.50532 * 180.02562 * 7 6 5
9 9 O 1.21582 * 119.99908 * 123.08758 * 8 7 6
10 10 N 1.34777 * 119.99709 * 303.08085 * 8 7 6
11 11 C 1.48211 * 119.97340 * 5.78432 * 10 8 7
12 12 C 1.47137 * 110.34597 * 102.45764 * 11 10 8
13 13 C 1.53800 * 111.84114 * 58.29690 * 12 11 10
14 14 N 1.43464 * 107.96254 * 281.67040 * 13 12 11
15 15 C 1.36929 * 118.93969 * 273.63090 * 14 13 12
16 16 H 1.08007 * 120.00265 * 138.51773 * 15 14 13
17 17 C 1.38818 * 119.99998 * 318.51321 * 15 14 13
18 18 N 1.31623 * 119.99752 * 159.16791 * 17 15 14
19 19 Si 1.86794 * 120.00049 * 339.16538 * 17 15 14
20 20 H 1.48498 * 109.47051 * 95.20775 * 19 17 15
21 21 H 1.48503 * 109.47468 * 215.21267 * 19 17 15
22 22 H 1.48503 * 109.46946 * 335.21221 * 19 17 15
23 23 C 1.48859 * 122.11994 * 93.65001 * 14 13 12
24 24 C 1.43616 * 119.96836 * 185.49802 * 10 8 7
25 25 C 1.38065 * 118.99168 * 0.03014 * 7 6 5
26 26 C 1.50703 * 120.55647 * 180.02562 * 25 7 6
27 27 N 1.36075 * 118.89611 * 359.97438 * 25 7 6
28 28 N 1.31294 * 125.50347 * 179.68839 * 2 1 3
29 29 H 1.08999 * 109.46833 * 90.00494 * 1 2 3
30 30 H 1.09001 * 109.46839 * 210.00126 * 1 2 3
31 31 H 1.09003 * 109.47251 * 329.99934 * 1 2 3
32 32 H 1.07992 * 126.16270 * 359.93823 * 3 2 1
33 33 H 1.08000 * 119.96325 * 180.02562 * 6 5 4
34 34 H 1.08999 * 109.32413 * 222.72824 * 11 10 8
35 35 H 1.08996 * 109.32365 * 342.36825 * 11 10 8
36 36 H 1.09004 * 109.00888 * 178.90181 * 12 11 10
37 37 H 1.08998 * 109.01141 * 297.76343 * 12 11 10
38 38 H 1.09000 * 109.75892 * 41.28665 * 13 12 11
39 39 H 1.08997 * 109.76452 * 162.00116 * 13 12 11
40 40 H 0.97001 * 119.99774 * 180.02562 * 18 17 15
41 41 H 1.09004 * 109.48221 * 80.58012 * 23 14 13
42 42 H 1.08993 * 109.48098 * 200.61757 * 23 14 13
43 43 H 1.09001 * 108.87612 * 31.47576 * 24 10 8
44 44 H 1.09000 * 108.87469 * 149.91311 * 24 10 8
45 45 H 1.08994 * 109.47302 * 91.20528 * 26 25 7
46 46 H 1.08999 * 109.47230 * 211.21249 * 26 25 7
47 47 H 1.09003 * 109.46907 * 331.20140 * 26 25 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3134 1.1304 0.0000
4 6 3.6338 0.7056 0.0006
5 7 4.7965 1.3748 0.0013
6 6 5.9424 0.7419 0.0023
7 6 5.9711 -0.6732 0.0032
8 6 7.2577 -1.3965 0.0049
9 8 7.5051 -2.1949 0.8878
10 7 8.1582 -1.1720 -0.9725
11 6 7.9130 -0.1084 -1.9752
12 6 8.7202 1.0822 -1.6659
13 6 10.2237 0.7605 -1.6292
14 7 10.5101 0.1270 -0.3742
15 6 10.7861 0.9094 0.7152
16 1 10.3742 0.6555 1.6808
17 6 11.5955 2.0289 0.5785
18 7 11.5418 2.9929 1.4731
19 14 12.7606 2.1673 -0.8749
20 1 12.1107 2.9484 -1.9578
21 1 14.0058 2.8546 -0.4476
22 1 13.0918 0.8087 -1.3749
23 6 10.5173 -1.3533 -0.2182
24 6 9.3575 -1.9594 -1.0377
25 6 4.7773 -1.3667 0.0024
26 6 4.7667 -2.8737 0.0040
27 7 3.6103 -0.6669 0.0013
28 7 2.2695 -1.0688 0.0058
29 1 -0.3633 -0.0001 -1.0277
30 1 -0.3633 -0.8900 0.5139
31 1 -0.3634 0.8900 0.5138
32 1 1.9737 2.1555 -0.0009
33 1 6.8669 1.3002 0.0032
34 1 8.1798 -0.4778 -2.9654
35 1 6.8571 0.1618 -1.9634
36 1 8.5382 1.8418 -2.4262
37 1 8.4182 1.4734 -0.6943
38 1 10.4766 0.0870 -2.4481
39 1 10.8000 1.6814 -1.7181
40 1 12.1071 3.7754 1.3775
41 1 11.4658 -1.7522 -0.5779
42 1 10.3909 -1.6086 0.8338
43 1 9.1452 -2.9576 -0.6547
44 1 9.6687 -2.0423 -2.0790
45 1 4.7412 -3.2359 1.0317
46 1 3.8859 -3.2314 -0.5293
47 1 5.6653 -3.2439 -0.4896
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000981720804.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:57:55
Heat of formation + Delta-G solvation = 124.166383 kcal
Electronic energy + Delta-G solvation = -31203.940779 eV
Core-core repulsion = 27197.393965 eV
Total energy + Delta-G solvation = -4006.546813 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-42.52976 -40.30497 -38.11081 -37.30833 -35.08968 -34.59277 -32.88311 -32.18266
-31.62248 -29.88758 -29.08822 -28.51659 -27.62964 -25.85309 -24.15540 -23.72521
-23.00449 -22.04961 -20.70219 -20.13608 -19.13353 -18.36907 -17.41362 -16.91635
-16.59074 -16.52437 -16.15113 -15.35280 -15.15732 -14.94412 -14.32268 -14.06896
-13.95683 -13.79901 -13.53442 -13.45685 -13.30194 -13.26499 -13.10309 -12.88759
-12.76324 -12.50711 -12.46084 -12.33422 -12.07142 -11.74590 -11.34727 -11.27400
-11.04440 -10.79117 -10.64234 -10.53562 -10.33249 -10.23080 -9.86334 -9.71563
-9.59217 -9.39463 -8.57948 -8.41653 -8.01201 -6.79185 -6.02472 -3.48853
0.32073 0.59353 1.72714 2.29284 2.73421 3.13743 3.25517 3.29767
3.42719 3.46749 3.70100 3.82687 4.05935 4.38288 4.47373 4.69715
4.81496 4.92948 5.01420 5.06328 5.11594 5.19964 5.23835 5.26273
5.27915 5.36188 5.41085 5.45100 5.47674 5.64305 5.67294 5.71593
5.76044 5.92923 5.94128 6.00941 6.15066 6.17614 6.21034 6.38521
6.47022 6.60416 6.67024 6.77625 6.96666 7.25359 7.46900 7.52259
8.07761 8.24574 8.37897 9.00931 9.67849 10.06069 11.12758
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.018173 B = 0.003343 C = 0.003060
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1540.387071 B = 8372.733417 C = 9148.262461
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 C 0.117 3.883
3 C -0.267 4.267
4 C 0.268 3.732
5 N -0.469 5.469
6 C 0.216 3.784
7 C -0.234 4.234
8 C 0.582 3.418
9 O -0.526 6.526
10 N -0.574 5.574
11 C 0.118 3.882
12 C -0.175 4.175
13 C 0.153 3.847
14 N -0.603 5.603
15 C -0.272 4.272
16 H 0.075 0.925
17 C 0.039 3.961
18 N -0.898 5.898
19 Si 0.880 3.120
20 H -0.286 1.286
21 H -0.302 1.302
22 H -0.271 1.271
23 C 0.127 3.873
24 C 0.103 3.897
25 C 0.243 3.757
26 C -0.116 4.116
27 N -0.313 5.313
28 N -0.313 5.313
29 H 0.083 0.917
30 H 0.077 0.923
31 H 0.084 0.916
32 H 0.163 0.837
33 H 0.193 0.807
34 H 0.073 0.927
35 H 0.069 0.931
36 H 0.065 0.935
37 H 0.079 0.921
38 H 0.038 0.962
39 H 0.053 0.947
40 H 0.263 0.737
41 H 0.034 0.966
42 H 0.065 0.935
43 H 0.078 0.922
44 H 0.068 0.932
45 H 0.102 0.898
46 H 0.088 0.912
47 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.964 -8.278 -8.969 20.898
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.043 4.043
3 C -0.297 4.297
4 C 0.042 3.958
5 N -0.180 5.180
6 C 0.032 3.968
7 C -0.244 4.244
8 C 0.367 3.633
9 O -0.402 6.402
10 N -0.305 5.305
11 C -0.004 4.004
12 C -0.215 4.215
13 C 0.026 3.974
14 N -0.326 5.326
15 C -0.401 4.401
16 H 0.093 0.907
17 C -0.162 4.162
18 N -0.539 5.539
19 Si 0.711 3.289
20 H -0.214 1.214
21 H -0.230 1.230
22 H -0.195 1.195
23 C 0.001 3.999
24 C -0.022 4.022
25 C 0.125 3.875
26 C -0.173 4.173
27 N -0.083 5.083
28 N -0.139 5.139
29 H 0.102 0.898
30 H 0.096 0.904
31 H 0.103 0.897
32 H 0.181 0.819
33 H 0.210 0.790
34 H 0.091 0.909
35 H 0.087 0.913
36 H 0.084 0.916
37 H 0.098 0.902
38 H 0.056 0.944
39 H 0.071 0.929
40 H 0.073 0.927
41 H 0.052 0.948
42 H 0.084 0.916
43 H 0.096 0.904
44 H 0.086 0.914
45 H 0.120 0.880
46 H 0.107 0.893
47 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges -17.106 -8.939 -8.448 21.068
hybrid contribution 0.996 0.615 -0.727 1.378
sum -16.110 -8.323 -9.175 20.322
Atomic orbital electron populations
1.20288 0.85451 1.03953 1.03554 1.22343 0.97346 0.90131 0.94462
1.20868 0.87458 1.00315 1.21105 1.20918 0.95132 0.80064 0.99663
1.68252 0.95913 1.36234 1.17558 1.23991 0.96869 0.90153 0.85818
1.20524 0.93444 0.95664 1.14784 1.17293 0.82407 0.81833 0.81761
1.90806 1.78502 1.36228 1.34691 1.47286 1.19412 1.35557 1.28221
1.20910 0.99701 0.88557 0.91223 1.21915 1.00263 0.96533 1.02817
1.20631 0.91905 0.96607 0.88236 1.43909 1.81312 1.00182 1.07236
1.18772 1.25465 1.05960 0.89871 0.90744 1.25564 0.97223 0.96766
0.96673 1.69860 1.39791 1.07365 1.36860 0.86882 0.81377 0.77832
0.82828 1.21382 1.23003 1.19539 1.22077 0.93815 0.84648 0.99324
1.21598 0.85245 0.94623 1.00743 1.20843 0.81261 0.95863 0.89569
1.21023 1.04861 0.85988 1.05397 1.46943 1.05834 1.07267 1.48230
1.77769 0.82394 1.21434 1.32266 0.89802 0.90397 0.89687 0.81949
0.79046 0.90860 0.91268 0.91616 0.90227 0.94377 0.92923 0.92679
0.94803 0.91630 0.90407 0.91380 0.87952 0.89331 0.88707
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.51 10.43 36.01 0.38 -0.14 16
2 C 0.12 1.37 7.16 -82.59 -0.59 0.78 16
3 C -0.27 -3.46 10.83 -39.18 -0.42 -3.89 16
4 C 0.27 4.13 7.91 -155.32 -1.23 2.90 16
5 N -0.47 -7.50 10.45 -11.91 -0.12 -7.62 16
6 C 0.22 3.34 8.89 -16.69 -0.15 3.19 16
7 C -0.23 -3.53 4.69 -104.88 -0.49 -4.02 16
8 C 0.58 9.45 6.00 -12.44 -0.07 9.38 16
9 O -0.53 -9.90 15.88 5.29 0.08 -9.81 16
10 N -0.57 -8.61 2.47 -178.18 -0.44 -9.05 16
11 C 0.12 1.55 5.09 -5.92 -0.03 1.52 16
12 C -0.17 -2.79 5.42 -29.13 -0.16 -2.95 16
13 C 0.15 2.94 4.54 -5.23 -0.02 2.92 16
14 N -0.60 -13.16 2.06 -172.29 -0.35 -13.51 16
15 C -0.27 -7.24 9.53 -15.06 -0.14 -7.39 16
16 H 0.07 2.23 8.06 -52.48 -0.42 1.81 16
17 C 0.04 1.07 5.29 -17.43 -0.09 0.98 16
18 N -0.90 -26.67 13.97 55.49 0.78 -25.89 16
19 Si 0.88 21.34 25.12 -169.99 -4.27 17.07 16
20 H -0.29 -6.66 6.72 56.52 0.38 -6.28 16
21 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16
22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16
23 C 0.13 2.37 6.84 -2.00 -0.01 2.36 16
24 C 0.10 1.52 5.17 -4.83 -0.02 1.49 16
25 C 0.24 3.44 6.93 -80.77 -0.56 2.88 16
26 C -0.12 -1.32 9.33 36.01 0.34 -0.98 16
27 N -0.31 -4.66 3.88 -7.99 -0.03 -4.69 16
28 N -0.31 -4.36 12.52 33.54 0.42 -3.94 16
29 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16
30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16
31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16
32 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16
33 H 0.19 3.02 5.21 -52.49 -0.27 2.74 16
34 H 0.07 0.80 8.06 -51.93 -0.42 0.38 16
35 H 0.07 0.85 5.30 -51.93 -0.28 0.57 16
36 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16
37 H 0.08 1.48 5.63 -51.93 -0.29 1.19 16
38 H 0.04 0.64 7.58 -51.93 -0.39 0.24 16
39 H 0.05 1.15 3.38 -51.93 -0.18 0.97 16
40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16
41 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16
42 H 0.07 1.35 7.97 -51.93 -0.41 0.93 16
43 H 0.08 1.09 7.45 -51.93 -0.39 0.71 16
44 H 0.07 0.85 7.73 -51.93 -0.40 0.45 16
45 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16
46 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16
47 H 0.09 1.04 6.90 -51.93 -0.36 0.68 16
LS Contribution 367.95 15.07 5.54 5.54
Total: -1.00 -33.17 367.95 -8.04 -41.21
By element:
Atomic # 1 Polarization: 8.02 SS G_CDS: -6.35 Total: 1.67 kcal
Atomic # 6 Polarization: 12.31 SS G_CDS: -3.29 Total: 9.02 kcal
Atomic # 7 Polarization: -64.94 SS G_CDS: 0.25 Total: -64.70 kcal
Atomic # 8 Polarization: -9.90 SS G_CDS: 0.08 Total: -9.81 kcal
Atomic # 14 Polarization: 21.34 SS G_CDS: -4.27 Total: 17.07 kcal
Total LS contribution 5.54 Total: 5.54 kcal
Total: -33.17 -8.04 -41.21 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000981720804.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 165.377 kcal
(2) G-P(sol) polarization free energy of solvation -33.172 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.206 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.211 kcal
(6) G-S(sol) free energy of system = (1) + (5) 124.166 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds