Wall clock time and date at job start Sat Apr 11 2020 06:57:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 C 1.38849 * 125.50274 * 2 1
4 4 C 1.38709 * 107.67180 * 179.97438 * 3 2 1
5 5 N 1.34150 * 132.24723 * 180.02562 * 4 3 2
6 6 C 1.30901 * 121.16702 * 179.97438 * 5 4 3
7 7 C 1.41542 * 120.07323 * 359.97181 * 6 5 4
8 8 C 1.47601 * 120.50532 * 180.02562 * 7 6 5
9 9 O 1.21582 * 119.99908 * 123.08758 * 8 7 6
10 10 N 1.34777 * 119.99709 * 303.08085 * 8 7 6
11 11 C 1.48211 * 119.97340 * 5.78432 * 10 8 7
12 12 C 1.47137 * 110.34597 * 102.45764 * 11 10 8
13 13 C 1.53800 * 111.84114 * 58.29690 * 12 11 10
14 14 N 1.43464 * 107.96254 * 281.67040 * 13 12 11
15 15 C 1.36929 * 118.93969 * 273.63090 * 14 13 12
16 16 H 1.08007 * 120.00265 * 138.51773 * 15 14 13
17 17 C 1.38818 * 119.99998 * 318.51321 * 15 14 13
18 18 N 1.31623 * 119.99752 * 159.16791 * 17 15 14
19 19 Si 1.86794 * 120.00049 * 339.16538 * 17 15 14
20 20 H 1.48498 * 109.47051 * 95.20775 * 19 17 15
21 21 H 1.48503 * 109.47468 * 215.21267 * 19 17 15
22 22 H 1.48503 * 109.46946 * 335.21221 * 19 17 15
23 23 C 1.48859 * 122.11994 * 93.65001 * 14 13 12
24 24 C 1.43616 * 119.96836 * 185.49802 * 10 8 7
25 25 C 1.38065 * 118.99168 * 0.03014 * 7 6 5
26 26 C 1.50703 * 120.55647 * 180.02562 * 25 7 6
27 27 N 1.36075 * 118.89611 * 359.97438 * 25 7 6
28 28 N 1.31294 * 125.50347 * 179.68839 * 2 1 3
29 29 H 1.08999 * 109.46833 * 90.00494 * 1 2 3
30 30 H 1.09001 * 109.46839 * 210.00126 * 1 2 3
31 31 H 1.09003 * 109.47251 * 329.99934 * 1 2 3
32 32 H 1.07992 * 126.16270 * 359.93823 * 3 2 1
33 33 H 1.08000 * 119.96325 * 180.02562 * 6 5 4
34 34 H 1.08999 * 109.32413 * 222.72824 * 11 10 8
35 35 H 1.08996 * 109.32365 * 342.36825 * 11 10 8
36 36 H 1.09004 * 109.00888 * 178.90181 * 12 11 10
37 37 H 1.08998 * 109.01141 * 297.76343 * 12 11 10
38 38 H 1.09000 * 109.75892 * 41.28665 * 13 12 11
39 39 H 1.08997 * 109.76452 * 162.00116 * 13 12 11
40 40 H 0.97001 * 119.99774 * 180.02562 * 18 17 15
41 41 H 1.09004 * 109.48221 * 80.58012 * 23 14 13
42 42 H 1.08993 * 109.48098 * 200.61757 * 23 14 13
43 43 H 1.09001 * 108.87612 * 31.47576 * 24 10 8
44 44 H 1.09000 * 108.87469 * 149.91311 * 24 10 8
45 45 H 1.08994 * 109.47302 * 91.20528 * 26 25 7
46 46 H 1.08999 * 109.47230 * 211.21249 * 26 25 7
47 47 H 1.09003 * 109.46907 * 331.20140 * 26 25 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3134 1.1304 0.0000
4 6 3.6338 0.7056 0.0006
5 7 4.7965 1.3748 0.0013
6 6 5.9424 0.7419 0.0023
7 6 5.9711 -0.6732 0.0032
8 6 7.2577 -1.3965 0.0049
9 8 7.5051 -2.1949 0.8878
10 7 8.1582 -1.1720 -0.9725
11 6 7.9130 -0.1084 -1.9752
12 6 8.7202 1.0822 -1.6659
13 6 10.2237 0.7605 -1.6292
14 7 10.5101 0.1270 -0.3742
15 6 10.7861 0.9094 0.7152
16 1 10.3742 0.6555 1.6808
17 6 11.5955 2.0289 0.5785
18 7 11.5418 2.9929 1.4731
19 14 12.7606 2.1673 -0.8749
20 1 12.1107 2.9484 -1.9578
21 1 14.0058 2.8546 -0.4476
22 1 13.0918 0.8087 -1.3749
23 6 10.5173 -1.3533 -0.2182
24 6 9.3575 -1.9594 -1.0377
25 6 4.7773 -1.3667 0.0024
26 6 4.7667 -2.8737 0.0040
27 7 3.6103 -0.6669 0.0013
28 7 2.2695 -1.0688 0.0058
29 1 -0.3633 -0.0001 -1.0277
30 1 -0.3633 -0.8900 0.5139
31 1 -0.3634 0.8900 0.5138
32 1 1.9737 2.1555 -0.0009
33 1 6.8669 1.3002 0.0032
34 1 8.1798 -0.4778 -2.9654
35 1 6.8571 0.1618 -1.9634
36 1 8.5382 1.8418 -2.4262
37 1 8.4182 1.4734 -0.6943
38 1 10.4766 0.0870 -2.4481
39 1 10.8000 1.6814 -1.7181
40 1 12.1071 3.7754 1.3775
41 1 11.4658 -1.7522 -0.5779
42 1 10.3909 -1.6086 0.8338
43 1 9.1452 -2.9576 -0.6547
44 1 9.6687 -2.0423 -2.0790
45 1 4.7412 -3.2359 1.0317
46 1 3.8859 -3.2314 -0.5293
47 1 5.6653 -3.2439 -0.4896
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000981720804.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:57:54
Heat of formation + Delta-G solvation = 102.825808 kcal
Electronic energy + Delta-G solvation = -31204.866176 eV
Core-core repulsion = 27197.393965 eV
Total energy + Delta-G solvation = -4007.472210 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-43.59749 -41.52843 -39.28249 -38.68574 -36.32033 -35.99916 -34.05773 -33.67920
-33.21041 -30.93063 -30.28882 -29.36781 -28.96217 -27.30903 -25.65054 -24.96015
-24.30958 -23.19759 -21.94106 -21.50473 -20.31996 -19.49842 -18.66091 -18.57424
-17.88726 -17.76383 -17.38316 -17.03522 -16.32697 -16.21730 -15.61957 -15.33757
-15.18650 -14.99755 -14.76812 -14.72923 -14.59464 -14.25897 -14.15500 -14.07403
-13.83605 -13.76020 -13.59999 -13.39080 -13.26664 -13.22941 -12.71179 -12.66810
-12.33193 -12.26450 -12.01981 -11.92133 -11.73638 -11.63888 -11.52075 -11.34777
-10.85544 -10.60296 -10.47674 -9.71793 -9.07964 -8.61769 -8.16514 -5.59239
-0.77393 -0.54044 0.67547 1.27600 1.33040 1.44923 1.54734 1.56048
1.98722 2.14509 2.44081 2.62296 2.84858 2.97939 3.11833 3.26794
3.41983 3.73384 3.89619 3.90578 4.01192 4.12502 4.18615 4.25505
4.27120 4.31911 4.40677 4.47978 4.61839 4.65946 4.67728 4.73518
4.77938 4.81001 4.83550 4.91581 4.92808 5.03121 5.06958 5.10758
5.12450 5.23664 5.46942 5.50386 5.68404 6.00694 6.18871 6.24444
6.27732 6.38242 7.00984 7.10157 7.70095 8.06790 9.03541
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.018173 B = 0.003343 C = 0.003060
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1540.387071 B = 8372.733417 C = 9148.262461
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 C 0.124 3.876
3 C -0.265 4.265
4 C 0.236 3.764
5 N -0.486 5.486
6 C 0.213 3.787
7 C -0.248 4.248
8 C 0.583 3.417
9 O -0.560 6.560
10 N -0.574 5.574
11 C 0.120 3.880
12 C -0.166 4.166
13 C 0.143 3.857
14 N -0.612 5.612
15 C -0.255 4.255
16 H 0.019 0.981
17 C -0.020 4.020
18 N -0.953 5.953
19 Si 0.954 3.046
20 H -0.267 1.267
21 H -0.316 1.316
22 H -0.255 1.255
23 C 0.124 3.876
24 C 0.108 3.892
25 C 0.249 3.751
26 C -0.110 4.110
27 N -0.324 5.324
28 N -0.327 5.327
29 H 0.104 0.896
30 H 0.085 0.915
31 H 0.106 0.894
32 H 0.183 0.817
33 H 0.182 0.818
34 H 0.114 0.886
35 H 0.079 0.921
36 H 0.091 0.909
37 H 0.043 0.957
38 H 0.077 0.923
39 H 0.029 0.971
40 H 0.262 0.738
41 H 0.051 0.949
42 H 0.030 0.970
43 H 0.086 0.914
44 H 0.109 0.891
45 H 0.103 0.897
46 H 0.103 0.897
47 H 0.100 0.900
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.795 -9.575 -12.463 24.500
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C -0.036 4.036
3 C -0.295 4.295
4 C 0.012 3.988
5 N -0.197 5.197
6 C 0.029 3.971
7 C -0.258 4.258
8 C 0.369 3.631
9 O -0.439 6.439
10 N -0.303 5.303
11 C -0.001 4.001
12 C -0.207 4.207
13 C 0.017 3.983
14 N -0.336 5.336
15 C -0.386 4.386
16 H 0.037 0.963
17 C -0.216 4.216
18 N -0.597 5.597
19 Si 0.783 3.217
20 H -0.194 1.194
21 H -0.245 1.245
22 H -0.179 1.179
23 C 0.000 4.000
24 C -0.016 4.016
25 C 0.131 3.869
26 C -0.167 4.167
27 N -0.094 5.094
28 N -0.152 5.152
29 H 0.122 0.878
30 H 0.104 0.896
31 H 0.125 0.875
32 H 0.200 0.800
33 H 0.198 0.802
34 H 0.132 0.868
35 H 0.097 0.903
36 H 0.109 0.891
37 H 0.061 0.939
38 H 0.096 0.904
39 H 0.047 0.953
40 H 0.070 0.930
41 H 0.069 0.931
42 H 0.049 0.951
43 H 0.104 0.896
44 H 0.127 0.873
45 H 0.121 0.879
46 H 0.122 0.878
47 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges -18.962 -10.254 -11.999 24.672
hybrid contribution 1.361 1.009 0.456 1.755
sum -17.601 -9.245 -11.544 22.990
Atomic orbital electron populations
1.20528 0.81848 1.05415 1.05237 1.23141 0.99311 0.88935 0.92244
1.21336 0.86747 1.01753 1.19674 1.21308 0.95678 0.80696 1.01114
1.68200 0.96327 1.36826 1.18340 1.23787 0.96519 0.90433 0.86388
1.20317 0.93419 0.95269 1.16830 1.17475 0.82928 0.81302 0.81405
1.90782 1.79270 1.37919 1.35963 1.47429 1.19062 1.35714 1.28088
1.21035 0.99844 0.86958 0.92265 1.21787 0.98437 0.98580 1.01855
1.20810 0.93447 0.96217 0.87777 1.43977 1.81643 1.01180 1.06795
1.18484 1.24169 1.06275 0.89638 0.96347 1.26207 0.98920 0.96395
1.00076 1.70020 1.41309 1.08368 1.39964 0.85695 0.78007 0.78450
0.79589 1.19406 1.24538 1.17909 1.22156 0.96588 0.82859 0.98445
1.21579 0.83562 0.94316 1.02168 1.21191 0.80947 0.96978 0.87818
1.21076 1.05825 0.84111 1.05645 1.47102 1.06300 1.07139 1.48841
1.77761 0.82094 1.22559 1.32773 0.87792 0.89633 0.87537 0.79982
0.80184 0.86783 0.90323 0.89052 0.93865 0.90450 0.95296 0.92951
0.93139 0.95113 0.89560 0.87342 0.87903 0.87818 0.88114
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.75 10.43 71.24 0.74 -0.01 16
2 C 0.12 2.62 7.16 42.79 0.31 2.93 16
3 C -0.27 -6.46 10.83 22.53 0.24 -6.21 16
4 C 0.24 7.19 7.91 133.01 1.05 8.25 16
5 N -0.49 -15.85 10.45 -191.60 -2.00 -17.85 16
6 C 0.21 6.82 8.89 85.65 0.76 7.58 16
7 C -0.25 -7.56 4.69 -20.03 -0.09 -7.65 16
8 C 0.58 18.97 6.00 86.71 0.52 19.49 16
9 O -0.56 -21.56 15.88 -3.97 -0.06 -21.62 16
10 N -0.57 -16.28 2.47 -835.90 -2.06 -18.34 16
11 C 0.12 2.82 5.09 84.23 0.43 3.25 16
12 C -0.17 -5.04 5.42 29.04 0.16 -4.88 16
13 C 0.14 5.16 4.54 87.21 0.40 5.56 16
14 N -0.61 -26.57 2.06 -698.99 -1.44 -28.01 16
15 C -0.26 -14.25 9.53 84.04 0.80 -13.45 16
16 H 0.02 1.22 8.06 -2.91 -0.02 1.20 16
17 C -0.02 -1.13 5.29 84.86 0.45 -0.68 16
18 N -0.95 -59.46 13.97 21.65 0.30 -59.16 16
19 Si 0.95 44.64 25.12 68.60 1.72 46.36 16
20 H -0.27 -11.60 6.72 99.48 0.67 -10.93 16
21 H -0.32 -15.41 7.11 99.48 0.71 -14.70 16
22 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16
23 C 0.12 4.57 6.84 86.40 0.59 5.16 16
24 C 0.11 2.92 5.17 87.39 0.45 3.37 16
25 C 0.25 6.95 6.93 41.86 0.29 7.24 16
26 C -0.11 -2.38 9.33 71.24 0.66 -1.72 16
27 N -0.32 -9.42 3.88 -179.18 -0.70 -10.11 16
28 N -0.33 -8.54 12.52 -47.79 -0.60 -9.14 16
29 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16
30 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16
31 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16
32 H 0.18 3.53 8.06 -2.91 -0.02 3.51 16
33 H 0.18 6.08 5.21 -2.91 -0.02 6.07 16
34 H 0.11 1.86 8.06 -2.39 -0.02 1.84 16
35 H 0.08 1.77 5.30 -2.39 -0.01 1.76 16
36 H 0.09 2.30 8.14 -2.39 -0.02 2.29 16
37 H 0.04 1.64 5.63 -2.39 -0.01 1.63 16
38 H 0.08 2.21 7.58 -2.39 -0.02 2.19 16
39 H 0.03 1.20 3.38 -2.39 -0.01 1.19 16
40 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16
41 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16
42 H 0.03 1.31 7.97 -2.39 -0.02 1.29 16
43 H 0.09 2.24 7.45 -2.39 -0.02 2.22 16
44 H 0.11 2.13 7.73 -2.39 -0.02 2.11 16
45 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16
46 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16
47 H 0.10 2.07 6.90 -2.39 -0.02 2.05 16
Total: -1.00 -77.58 367.95 3.90 -73.68
By element:
Atomic # 1 Polarization: 15.00 SS G_CDS: 0.97 Total: 15.97 kcal
Atomic # 6 Polarization: 20.46 SS G_CDS: 7.76 Total: 28.22 kcal
Atomic # 7 Polarization: -136.11 SS G_CDS: -6.50 Total: -142.61 kcal
Atomic # 8 Polarization: -21.56 SS G_CDS: -0.06 Total: -21.62 kcal
Atomic # 14 Polarization: 44.64 SS G_CDS: 1.72 Total: 46.36 kcal
Total: -77.58 3.90 -73.68 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000981720804.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 176.506 kcal
(2) G-P(sol) polarization free energy of solvation -77.577 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.928 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.897 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.680 kcal
(6) G-S(sol) free energy of system = (1) + (5) 102.826 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds