Wall clock time and date at job start Sat Apr 11 2020 06:55:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50694 * 1
3 3 N 1.30250 * 125.70809 * 2 1
4 4 N 1.39989 * 109.74867 * 180.31647 * 3 2 1
5 5 H 0.97008 * 125.90308 * 179.71767 * 4 3 2
6 6 C 1.37074 * 108.19168 * 359.73753 * 4 3 2
7 7 N 1.32536 * 133.44615 * 180.02562 * 6 4 3
8 8 C 1.31450 * 121.97786 * 180.02562 * 7 6 4
9 9 C 1.50704 * 119.16505 * 180.02562 * 8 7 6
10 10 C 1.38701 * 121.66732 * 359.97438 * 8 7 6
11 11 C 1.39290 * 119.36207 * 359.97438 * 10 8 7
12 12 C 1.47866 * 121.08885 * 179.97438 * 11 10 8
13 13 O 1.21546 * 120.00603 * 142.70946 * 12 11 10
14 14 N 1.34785 * 120.00074 * 322.70123 * 12 11 10
15 15 C 1.46493 * 120.00246 * 180.02562 * 14 12 11
16 16 H 1.09001 * 109.49897 * 35.00202 * 15 14 12
17 17 C 1.53035 * 109.49853 * 155.06755 * 15 14 12
18 18 C 1.53043 * 109.53788 * 181.31750 * 17 15 14
19 19 C 1.53196 * 109.31050 * 298.63280 * 18 17 15
20 20 N 1.46917 * 108.77396 * 54.63508 * 19 18 17
21 21 C 1.36945 * 120.63010 * 126.39191 * 20 19 18
22 22 H 1.07995 * 120.00246 * 209.59257 * 21 20 19
23 23 C 1.38816 * 119.99572 * 29.58531 * 21 20 19
24 24 N 1.31614 * 120.00256 * 13.06059 * 23 21 20
25 25 Si 1.86797 * 119.99695 * 193.04821 * 23 21 20
26 26 H 1.48497 * 109.46990 * 90.00770 * 25 23 21
27 27 H 1.48501 * 109.47221 * 210.00290 * 25 23 21
28 28 H 1.48499 * 109.47461 * 330.00643 * 25 23 21
29 29 C 1.46928 * 118.77098 * 306.40979 * 20 19 18
30 30 C 1.40934 * 106.33854 * 0.02562 * 6 4 3
31 31 H 1.09000 * 109.47104 * 264.08019 * 1 2 3
32 32 H 1.09004 * 109.47424 * 24.07746 * 1 2 3
33 33 H 1.08996 * 109.47422 * 144.07993 * 1 2 3
34 34 H 1.09004 * 109.46385 * 269.97369 * 9 8 7
35 35 H 1.08990 * 109.47230 * 29.97556 * 9 8 7
36 36 H 1.09004 * 109.46798 * 149.97834 * 9 8 7
37 37 H 1.07997 * 120.31565 * 179.97438 * 10 8 7
38 38 H 0.97004 * 119.99184 * 0.02562 * 14 12 11
39 39 H 1.09000 * 109.46133 * 301.33331 * 17 15 14
40 40 H 1.09000 * 109.46575 * 61.29203 * 17 15 14
41 41 H 1.09000 * 109.49931 * 58.58695 * 18 17 15
42 42 H 1.09006 * 109.49940 * 178.64940 * 18 17 15
43 43 H 1.09005 * 109.58454 * 174.42701 * 19 18 17
44 44 H 1.09003 * 109.58392 * 294.70247 * 19 18 17
45 45 H 0.96998 * 120.00051 * 180.02562 * 24 23 21
46 46 H 1.09006 * 109.56311 * 293.78994 * 29 20 19
47 47 H 1.08993 * 109.62243 * 173.35692 * 29 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 7 2.2672 1.0576 0.0000
4 7 3.6131 0.6727 -0.0073
5 1 4.3760 1.2718 -0.0126
6 6 3.6665 -0.6970 -0.0060
7 7 4.6635 -1.5702 -0.0102
8 6 4.4525 -2.8677 -0.0081
9 6 5.6336 -3.8038 -0.0127
10 6 3.1705 -3.3969 -0.0007
11 6 2.0760 -2.5354 0.0051
12 6 0.6928 -3.0582 0.0125
13 8 -0.1684 -2.4898 0.6548
14 7 0.3869 -4.1650 -0.6932
15 6 -0.9835 -4.6827 -0.6864
16 1 -1.6864 -3.8508 -0.6418
17 6 -1.2301 -5.4920 -1.9616
18 6 -2.6717 -6.0058 -1.9709
19 6 -2.8897 -6.9251 -0.7650
20 7 -2.5156 -6.1995 0.4565
21 6 -3.3928 -6.0960 1.5030
22 1 -3.3584 -5.2345 2.1533
23 6 -4.3264 -7.0985 1.7277
24 7 -4.2110 -8.2555 1.1110
25 14 -5.7462 -6.8055 2.9056
26 1 -6.8997 -6.2414 2.1598
27 1 -6.1433 -8.0920 3.5321
28 1 -5.3244 -5.8502 3.9614
29 6 -1.1826 -5.5864 0.5346
30 6 2.3306 -1.1458 0.0016
31 1 -0.3633 -0.1060 1.0222
32 1 -0.3634 0.9383 -0.4193
33 1 -0.3634 -0.8322 -0.6028
34 1 5.9132 -4.0307 -1.0415
35 1 6.4735 -3.3314 0.4965
36 1 5.3679 -4.7263 0.5036
37 1 3.0224 -4.4667 0.0005
38 1 1.0743 -4.6188 -1.2056
39 1 -1.0653 -4.8573 -2.8322
40 1 -0.5431 -6.3376 -1.9937
41 1 -3.3591 -5.1618 -1.9139
42 1 -2.8539 -6.5619 -2.8905
43 1 -3.9393 -7.2145 -0.7112
44 1 -2.2699 -7.8158 -0.8678
45 1 -4.8635 -8.9559 1.2678
46 1 -0.4216 -6.3668 0.5395
47 1 -1.1057 -4.9924 1.4452
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001008870604.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:55:47
Heat of formation + Delta-G solvation = 82.018350 kcal
Electronic energy + Delta-G solvation = -30133.068381 eV
Core-core repulsion = 26124.693892 eV
Total energy + Delta-G solvation = -4008.374489 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-42.11405 -39.77758 -38.59746 -37.39921 -34.44819 -33.91725 -32.66811 -32.24795
-31.52029 -30.48297 -28.74141 -28.05045 -27.61527 -25.31219 -24.76727 -22.89379
-22.18779 -21.91374 -20.70605 -20.01315 -19.45320 -18.40907 -17.46410 -17.22566
-16.80506 -16.00185 -15.64285 -15.44006 -14.81936 -14.60573 -14.49714 -14.17398
-14.03158 -13.83138 -13.50304 -13.29772 -13.18376 -12.98123 -12.86993 -12.63218
-12.46731 -12.41004 -12.25632 -11.94801 -11.84417 -11.18548 -11.05884 -10.90853
-10.85901 -10.72253 -10.35643 -10.29288 -10.23163 -9.93273 -9.85397 -9.68128
-9.50930 -9.05416 -8.88301 -8.71261 -8.43954 -6.66841 -5.79035 -3.25095
0.17031 0.86745 2.10595 2.15791 2.74464 3.07938 3.39363 3.45818
3.46380 3.48430 3.85274 4.17561 4.29204 4.41315 4.50125 4.55041
4.94734 5.00073 5.13267 5.24229 5.24757 5.35183 5.36620 5.50524
5.56824 5.58207 5.59110 5.66838 5.73069 5.75129 5.80567 6.02961
6.06975 6.11193 6.20161 6.33766 6.48624 6.57355 6.59947 6.65191
6.80131 6.83039 6.92735 7.14621 7.34966 7.56493 7.62263 7.66220
7.81653 8.21188 8.46364 9.21641 9.82524 10.38244 11.29230
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.015137 B = 0.002777 C = 0.002604
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1849.269824 B =10080.394286 C =10752.135530
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 C 0.130 3.870
3 N -0.244 5.244
4 N -0.493 5.493
5 H 0.445 0.555
6 C 0.320 3.680
7 N -0.499 5.499
8 C 0.200 3.800
9 C -0.106 4.106
10 C -0.186 4.186
11 C 0.010 3.990
12 C 0.549 3.451
13 O -0.510 6.510
14 N -0.709 5.709
15 C 0.125 3.875
16 H 0.089 0.911
17 C -0.115 4.115
18 C -0.140 4.140
19 C 0.167 3.833
20 N -0.587 5.587
21 C -0.251 4.251
22 H 0.067 0.933
23 C 0.003 3.997
24 N -0.906 5.906
25 Si 0.905 3.095
26 H -0.287 1.287
27 H -0.291 1.291
28 H -0.278 1.278
29 C 0.142 3.858
30 C -0.190 4.190
31 H 0.094 0.906
32 H 0.070 0.930
33 H 0.088 0.912
34 H 0.085 0.915
35 H 0.081 0.919
36 H 0.084 0.916
37 H 0.150 0.850
38 H 0.397 0.603
39 H 0.051 0.949
40 H 0.060 0.940
41 H 0.057 0.943
42 H 0.054 0.946
43 H 0.091 0.909
44 H 0.019 0.981
45 H 0.254 0.746
46 H 0.018 0.982
47 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.648 10.113 -7.510 21.682
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.046 4.046
3 N -0.061 5.061
4 N -0.210 5.210
5 H 0.291 0.709
6 C 0.078 3.922
7 N -0.215 5.215
8 C 0.050 3.950
9 C -0.164 4.164
10 C -0.208 4.208
11 C -0.004 4.004
12 C 0.334 3.666
13 O -0.385 6.385
14 N -0.360 5.360
15 C 0.020 3.980
16 H 0.107 0.893
17 C -0.153 4.153
18 C -0.180 4.180
19 C 0.041 3.959
20 N -0.310 5.310
21 C -0.380 4.380
22 H 0.085 0.915
23 C -0.195 4.195
24 N -0.550 5.550
25 Si 0.735 3.265
26 H -0.214 1.214
27 H -0.217 1.217
28 H -0.203 1.203
29 C 0.015 3.985
30 C -0.201 4.201
31 H 0.113 0.887
32 H 0.089 0.911
33 H 0.107 0.893
34 H 0.104 0.896
35 H 0.100 0.900
36 H 0.103 0.897
37 H 0.168 0.832
38 H 0.231 0.769
39 H 0.070 0.930
40 H 0.078 0.922
41 H 0.076 0.924
42 H 0.073 0.927
43 H 0.109 0.891
44 H 0.037 0.963
45 H 0.064 0.936
46 H 0.036 0.964
47 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 17.722 12.068 -6.999 22.554
hybrid contribution -0.565 -0.952 0.360 1.164
sum 17.157 11.116 -6.638 21.494
Atomic orbital electron populations
1.20483 0.84517 1.03119 1.05034 1.22465 0.97815 0.88231 0.96095
1.76884 0.85932 1.22319 1.20986 1.45915 1.06508 1.02044 1.66554
0.70864 1.18956 0.89762 0.86704 0.96779 1.66283 1.34202 1.02382
1.18657 1.21148 0.94480 0.88768 0.90589 1.20831 0.94760 0.97039
1.03755 1.21987 0.91771 1.01134 1.05906 1.19970 0.94388 0.91470
0.94614 1.18016 0.86907 0.81007 0.80682 1.90846 1.48357 1.58016
1.41292 1.46113 1.13046 1.27319 1.49506 1.21859 0.80633 0.97634
0.97849 0.89268 1.21684 0.99130 0.98857 0.95653 1.22194 0.94365
1.00918 1.00477 1.20864 1.02050 0.90685 0.82280 1.43975 1.10396
1.62298 1.14314 1.19238 1.10505 1.01715 1.06571 0.91545 1.25089
1.00828 0.94616 0.98963 1.69990 1.36103 1.03296 1.45657 0.86244
0.82562 0.76997 0.80716 1.21377 1.21746 1.20340 1.21188 0.88578
0.93821 0.94961 1.19171 0.94020 0.93715 1.13167 0.88722 0.91126
0.89302 0.89599 0.90044 0.89703 0.83224 0.76948 0.93047 0.92163
0.92406 0.92699 0.89067 0.96310 0.93627 0.96426 0.92277
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.92 8.58 36.00 0.31 -0.61 16
2 C 0.13 1.77 7.22 -82.18 -0.59 1.18 16
3 N -0.24 -3.21 12.57 33.83 0.43 -2.79 16
4 N -0.49 -5.67 7.43 31.14 0.23 -5.44 16
5 H 0.45 3.69 8.96 -182.67 -1.64 2.05 16
6 C 0.32 4.10 8.48 -156.07 -1.32 2.78 16
7 N -0.50 -5.85 10.25 -8.59 -0.09 -5.94 16
8 C 0.20 1.94 6.78 -82.58 -0.56 1.38 16
9 C -0.11 -0.63 10.14 36.01 0.37 -0.26 16
10 C -0.19 -1.84 9.04 -39.02 -0.35 -2.20 16
11 C 0.01 0.12 5.83 -104.41 -0.61 -0.49 16
12 C 0.55 7.89 6.85 -12.32 -0.08 7.81 16
13 O -0.51 -8.92 12.84 5.32 0.07 -8.85 16
14 N -0.71 -9.22 5.02 -54.63 -0.27 -9.49 16
15 C 0.13 2.06 2.60 -67.81 -0.18 1.88 16
16 H 0.09 1.67 7.58 -51.93 -0.39 1.28 16
17 C -0.12 -1.71 5.35 -26.69 -0.14 -1.86 16
18 C -0.14 -2.47 6.08 -26.61 -0.16 -2.63 16
19 C 0.17 3.80 5.28 -3.71 -0.02 3.78 16
20 N -0.59 -14.37 2.99 -172.31 -0.52 -14.89 16
21 C -0.25 -6.86 9.59 -15.05 -0.14 -7.01 16
22 H 0.07 1.83 7.86 -52.49 -0.41 1.42 16
23 C 0.00 0.09 5.00 -17.43 -0.09 0.01 16
24 N -0.91 -25.81 11.06 55.49 0.61 -25.19 16
25 Si 0.90 21.73 29.57 -169.99 -5.03 16.70 16
26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16
27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16
28 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
29 C 0.14 2.92 6.09 -3.71 -0.02 2.90 16
30 C -0.19 -2.60 5.98 -106.63 -0.64 -3.24 16
31 H 0.09 1.26 7.76 -51.93 -0.40 0.86 16
32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16
33 H 0.09 1.20 6.14 -51.93 -0.32 0.88 16
34 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16
35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16
36 H 0.08 0.37 8.07 -51.93 -0.42 -0.05 16
37 H 0.15 1.09 7.80 -52.49 -0.41 0.68 16
38 H 0.40 3.91 7.97 -40.82 -0.33 3.59 16
39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16
40 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16
41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16
42 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16
43 H 0.09 2.36 6.04 -51.93 -0.31 2.04 16
44 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16
45 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16
46 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16
47 H 0.06 1.31 7.93 -51.93 -0.41 0.90 16
LS Contribution 379.65 15.07 5.72 5.72
Total: -1.00 -32.62 379.65 -11.07 -43.69
By element:
Atomic # 1 Polarization: 11.05 SS G_CDS: -7.98 Total: 3.07 kcal
Atomic # 6 Polarization: 7.66 SS G_CDS: -4.24 Total: 3.42 kcal
Atomic # 7 Polarization: -64.13 SS G_CDS: 0.39 Total: -63.74 kcal
Atomic # 8 Polarization: -8.92 SS G_CDS: 0.07 Total: -8.85 kcal
Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal
Total LS contribution 5.72 Total: 5.72 kcal
Total: -32.62 -11.07 -43.69 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001008870604.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 125.709 kcal
(2) G-P(sol) polarization free energy of solvation -32.621 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.088 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.069 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.691 kcal
(6) G-S(sol) free energy of system = (1) + (5) 82.018 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds