Wall clock time and date at job start Sat Apr 11 2020 06:55:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50694 * 1
3 3 N 1.30250 * 125.70809 * 2 1
4 4 N 1.39989 * 109.74867 * 180.31647 * 3 2 1
5 5 H 0.97008 * 125.90308 * 179.71767 * 4 3 2
6 6 C 1.37074 * 108.19168 * 359.73753 * 4 3 2
7 7 N 1.32536 * 133.44615 * 180.02562 * 6 4 3
8 8 C 1.31450 * 121.97786 * 180.02562 * 7 6 4
9 9 C 1.50704 * 119.16505 * 180.02562 * 8 7 6
10 10 C 1.38701 * 121.66732 * 359.97438 * 8 7 6
11 11 C 1.39290 * 119.36207 * 359.97438 * 10 8 7
12 12 C 1.47866 * 121.08885 * 179.97438 * 11 10 8
13 13 O 1.21546 * 120.00603 * 142.70946 * 12 11 10
14 14 N 1.34785 * 120.00074 * 322.70123 * 12 11 10
15 15 C 1.46493 * 120.00246 * 180.02562 * 14 12 11
16 16 H 1.09001 * 109.49897 * 35.00202 * 15 14 12
17 17 C 1.53035 * 109.49853 * 155.06755 * 15 14 12
18 18 C 1.53043 * 109.53788 * 181.31750 * 17 15 14
19 19 C 1.53196 * 109.31050 * 298.63280 * 18 17 15
20 20 N 1.46917 * 108.77396 * 54.63508 * 19 18 17
21 21 C 1.36945 * 120.63010 * 126.39191 * 20 19 18
22 22 H 1.07995 * 120.00246 * 209.59257 * 21 20 19
23 23 C 1.38816 * 119.99572 * 29.58531 * 21 20 19
24 24 N 1.31614 * 120.00256 * 13.06059 * 23 21 20
25 25 Si 1.86797 * 119.99695 * 193.04821 * 23 21 20
26 26 H 1.48497 * 109.46990 * 90.00770 * 25 23 21
27 27 H 1.48501 * 109.47221 * 210.00290 * 25 23 21
28 28 H 1.48499 * 109.47461 * 330.00643 * 25 23 21
29 29 C 1.46928 * 118.77098 * 306.40979 * 20 19 18
30 30 C 1.40934 * 106.33854 * 0.02562 * 6 4 3
31 31 H 1.09000 * 109.47104 * 264.08019 * 1 2 3
32 32 H 1.09004 * 109.47424 * 24.07746 * 1 2 3
33 33 H 1.08996 * 109.47422 * 144.07993 * 1 2 3
34 34 H 1.09004 * 109.46385 * 269.97369 * 9 8 7
35 35 H 1.08990 * 109.47230 * 29.97556 * 9 8 7
36 36 H 1.09004 * 109.46798 * 149.97834 * 9 8 7
37 37 H 1.07997 * 120.31565 * 179.97438 * 10 8 7
38 38 H 0.97004 * 119.99184 * 0.02562 * 14 12 11
39 39 H 1.09000 * 109.46133 * 301.33331 * 17 15 14
40 40 H 1.09000 * 109.46575 * 61.29203 * 17 15 14
41 41 H 1.09000 * 109.49931 * 58.58695 * 18 17 15
42 42 H 1.09006 * 109.49940 * 178.64940 * 18 17 15
43 43 H 1.09005 * 109.58454 * 174.42701 * 19 18 17
44 44 H 1.09003 * 109.58392 * 294.70247 * 19 18 17
45 45 H 0.96998 * 120.00051 * 180.02562 * 24 23 21
46 46 H 1.09006 * 109.56311 * 293.78994 * 29 20 19
47 47 H 1.08993 * 109.62243 * 173.35692 * 29 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 7 2.2672 1.0576 0.0000
4 7 3.6131 0.6727 -0.0073
5 1 4.3760 1.2718 -0.0126
6 6 3.6665 -0.6970 -0.0060
7 7 4.6635 -1.5702 -0.0102
8 6 4.4525 -2.8677 -0.0081
9 6 5.6336 -3.8038 -0.0127
10 6 3.1705 -3.3969 -0.0007
11 6 2.0760 -2.5354 0.0051
12 6 0.6928 -3.0582 0.0125
13 8 -0.1684 -2.4898 0.6548
14 7 0.3869 -4.1650 -0.6932
15 6 -0.9835 -4.6827 -0.6864
16 1 -1.6864 -3.8508 -0.6418
17 6 -1.2301 -5.4920 -1.9616
18 6 -2.6717 -6.0058 -1.9709
19 6 -2.8897 -6.9251 -0.7650
20 7 -2.5156 -6.1995 0.4565
21 6 -3.3928 -6.0960 1.5030
22 1 -3.3584 -5.2345 2.1533
23 6 -4.3264 -7.0985 1.7277
24 7 -4.2110 -8.2555 1.1110
25 14 -5.7462 -6.8055 2.9056
26 1 -6.8997 -6.2414 2.1598
27 1 -6.1433 -8.0920 3.5321
28 1 -5.3244 -5.8502 3.9614
29 6 -1.1826 -5.5864 0.5346
30 6 2.3306 -1.1458 0.0016
31 1 -0.3633 -0.1060 1.0222
32 1 -0.3634 0.9383 -0.4193
33 1 -0.3634 -0.8322 -0.6028
34 1 5.9132 -4.0307 -1.0415
35 1 6.4735 -3.3314 0.4965
36 1 5.3679 -4.7263 0.5036
37 1 3.0224 -4.4667 0.0005
38 1 1.0743 -4.6188 -1.2056
39 1 -1.0653 -4.8573 -2.8322
40 1 -0.5431 -6.3376 -1.9937
41 1 -3.3591 -5.1618 -1.9139
42 1 -2.8539 -6.5619 -2.8905
43 1 -3.9393 -7.2145 -0.7112
44 1 -2.2699 -7.8158 -0.8678
45 1 -4.8635 -8.9559 1.2678
46 1 -0.4216 -6.3668 0.5395
47 1 -1.1057 -4.9924 1.4452
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001008870604.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:55:46
Heat of formation + Delta-G solvation = 60.389356 kcal
Electronic energy + Delta-G solvation = -30134.006285 eV
Core-core repulsion = 26124.693892 eV
Total energy + Delta-G solvation = -4009.312393 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-43.03094 -40.96832 -39.50473 -38.89772 -35.96989 -34.89439 -34.18403 -33.15484
-32.46115 -32.29225 -30.20460 -28.97947 -28.40677 -27.22585 -25.78974 -23.94915
-23.81478 -23.15334 -21.82857 -21.23503 -20.76305 -19.45535 -18.69578 -18.36387
-18.18797 -17.20610 -16.87506 -16.60807 -16.47515 -15.81329 -15.66876 -15.30544
-15.17602 -15.01964 -14.85914 -14.76791 -14.25337 -14.14198 -14.00716 -13.82832
-13.61722 -13.40506 -13.32720 -13.01223 -12.96248 -12.77060 -12.68537 -12.50300
-12.11857 -12.05817 -11.95232 -11.77036 -11.68527 -11.53648 -11.28644 -11.27181
-10.58788 -10.56014 -10.12423 -9.93778 -9.60041 -8.63189 -7.87050 -5.35640
-0.74973 0.01012 1.14342 1.26598 1.46410 1.47451 1.56403 1.69037
1.95324 2.51402 2.56220 3.02461 3.25122 3.27948 3.42819 3.52160
3.65913 3.79588 3.92275 4.11170 4.15917 4.21416 4.29464 4.33172
4.53481 4.61291 4.66096 4.70904 4.74296 4.83055 4.87059 4.87864
4.93161 4.95851 5.06666 5.09508 5.16721 5.19401 5.29444 5.32131
5.48097 5.48521 5.59818 5.67152 5.82907 6.04635 6.20511 6.41259
6.49706 6.77332 7.13797 7.17734 7.86385 8.35366 9.17821
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.015137 B = 0.002777 C = 0.002604
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1849.269824 B =10080.394286 C =10752.135530
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 C 0.114 3.886
3 N -0.255 5.255
4 N -0.484 5.484
5 H 0.457 0.543
6 C 0.308 3.692
7 N -0.507 5.507
8 C 0.202 3.798
9 C -0.104 4.104
10 C -0.169 4.169
11 C -0.006 4.006
12 C 0.552 3.448
13 O -0.547 6.547
14 N -0.693 5.693
15 C 0.143 3.857
16 H 0.064 0.936
17 C -0.105 4.105
18 C -0.130 4.130
19 C 0.171 3.829
20 N -0.607 5.607
21 C -0.264 4.264
22 H 0.054 0.946
23 C -0.043 4.043
24 N -0.930 5.930
25 Si 0.964 3.036
26 H -0.283 1.283
27 H -0.290 1.290
28 H -0.275 1.275
29 C 0.145 3.855
30 C -0.215 4.215
31 H 0.080 0.920
32 H 0.086 0.914
33 H 0.077 0.923
34 H 0.106 0.894
35 H 0.082 0.918
36 H 0.106 0.894
37 H 0.182 0.818
38 H 0.417 0.583
39 H 0.086 0.914
40 H 0.078 0.922
41 H 0.047 0.953
42 H 0.082 0.918
43 H 0.054 0.946
44 H 0.006 0.994
45 H 0.251 0.749
46 H 0.025 0.975
47 H 0.032 0.968
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.903 9.697 -8.889 23.858
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C -0.062 4.062
3 N -0.073 5.073
4 N -0.203 5.203
5 H 0.306 0.694
6 C 0.067 3.933
7 N -0.224 5.224
8 C 0.052 3.948
9 C -0.161 4.161
10 C -0.191 4.191
11 C -0.020 4.020
12 C 0.338 3.662
13 O -0.425 6.425
14 N -0.345 5.345
15 C 0.037 3.963
16 H 0.083 0.917
17 C -0.143 4.143
18 C -0.169 4.169
19 C 0.046 3.954
20 N -0.331 5.331
21 C -0.395 4.395
22 H 0.072 0.928
23 C -0.239 4.239
24 N -0.576 5.576
25 Si 0.792 3.208
26 H -0.210 1.210
27 H -0.217 1.217
28 H -0.200 1.200
29 C 0.018 3.982
30 C -0.226 4.226
31 H 0.099 0.901
32 H 0.105 0.895
33 H 0.096 0.904
34 H 0.124 0.876
35 H 0.101 0.899
36 H 0.125 0.875
37 H 0.199 0.801
38 H 0.254 0.746
39 H 0.104 0.896
40 H 0.097 0.903
41 H 0.066 0.934
42 H 0.101 0.899
43 H 0.072 0.928
44 H 0.024 0.976
45 H 0.061 0.939
46 H 0.043 0.957
47 H 0.051 0.949
Dipole moment (debyes) X Y Z Total
from point charges 20.031 11.672 -8.410 24.662
hybrid contribution -1.136 -0.858 0.821 1.644
sum 18.895 10.814 -7.589 23.056
Atomic orbital electron populations
1.20352 0.84455 1.03440 1.04039 1.22574 0.98106 0.88681 0.96801
1.76805 0.86688 1.22474 1.21292 1.45912 1.06391 1.02134 1.65868
0.69439 1.19123 0.89778 0.87159 0.97273 1.66424 1.33778 1.03159
1.18996 1.21889 0.95765 0.88572 0.88569 1.20997 0.93045 0.96776
1.05324 1.22378 0.90980 1.02293 1.03433 1.19843 0.93897 0.91562
0.96686 1.18301 0.87375 0.80726 0.79818 1.90837 1.49710 1.59111
1.42823 1.45797 1.12199 1.27020 1.49441 1.21338 0.81977 0.96097
0.96884 0.91741 1.21618 0.97343 0.99679 0.95658 1.22021 0.96310
0.99673 0.98944 1.20722 0.99455 0.91393 0.83835 1.44192 1.11598
1.62879 1.14399 1.19408 1.11526 1.01292 1.07229 0.92797 1.25740
1.02949 0.94475 1.00724 1.70124 1.36746 1.03832 1.46891 0.85326
0.79814 0.76724 0.78940 1.20959 1.21661 1.20024 1.21231 0.86976
0.94005 0.96015 1.19371 0.94527 0.94255 1.14471 0.90100 0.89550
0.90398 0.87599 0.89900 0.87523 0.80118 0.74556 0.89552 0.90307
0.93441 0.89935 0.92762 0.97636 0.93943 0.95686 0.94893
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -1.68 8.58 71.23 0.61 -1.07 16
2 C 0.11 3.15 7.22 43.50 0.31 3.46 16
3 N -0.25 -6.71 12.57 -46.89 -0.59 -7.30 16
4 N -0.48 -10.87 7.43 -55.40 -0.41 -11.28 16
5 H 0.46 7.25 8.96 -213.38 -1.91 5.34 16
6 C 0.31 7.60 8.48 134.11 1.14 8.74 16
7 N -0.51 -10.86 10.25 -181.09 -1.86 -12.72 16
8 C 0.20 3.29 6.78 42.73 0.29 3.58 16
9 C -0.10 -0.80 10.14 71.24 0.72 -0.07 16
10 C -0.17 -2.84 9.04 22.63 0.20 -2.63 16
11 C -0.01 -0.14 5.83 -19.73 -0.11 -0.26 16
12 C 0.55 15.48 6.85 86.79 0.59 16.07 16
13 O -0.55 -19.66 12.84 -3.86 -0.05 -19.71 16
14 N -0.69 -16.59 5.02 -445.02 -2.23 -18.83 16
15 C 0.14 4.53 2.60 45.07 0.12 4.65 16
16 H 0.06 2.42 7.58 -2.39 -0.02 2.40 16
17 C -0.11 -2.80 5.35 30.62 0.16 -2.63 16
18 C -0.13 -4.38 6.08 30.67 0.19 -4.19 16
19 C 0.17 7.86 5.28 86.37 0.46 8.31 16
20 N -0.61 -30.30 2.99 -699.08 -2.09 -32.39 16
21 C -0.26 -14.90 9.59 84.03 0.81 -14.10 16
22 H 0.05 3.10 7.86 -2.91 -0.02 3.08 16
23 C -0.04 -2.42 5.00 84.86 0.42 -2.00 16
24 N -0.93 -54.22 11.06 21.65 0.24 -53.98 16
25 Si 0.96 45.57 29.57 68.60 2.03 47.60 16
26 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16
27 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16
28 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16
29 C 0.14 5.96 6.09 86.36 0.53 6.48 16
30 C -0.22 -5.82 5.98 -21.17 -0.13 -5.94 16
31 H 0.08 2.30 7.76 -2.39 -0.02 2.28 16
32 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16
33 H 0.08 2.18 6.14 -2.39 -0.01 2.17 16
34 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16
35 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16
36 H 0.11 0.40 8.07 -2.38 -0.02 0.38 16
37 H 0.18 1.81 7.80 -2.91 -0.02 1.79 16
38 H 0.42 6.68 7.97 -92.71 -0.74 5.94 16
39 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16
40 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16
41 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16
42 H 0.08 2.34 8.14 -2.38 -0.02 2.33 16
43 H 0.05 2.88 6.04 -2.38 -0.01 2.87 16
44 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16
45 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16
46 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16
47 H 0.03 1.50 7.93 -2.39 -0.02 1.48 16
Total: -1.00 -74.32 379.65 -0.28 -74.60
By element:
Atomic # 1 Polarization: 17.24 SS G_CDS: -1.63 Total: 15.62 kcal
Atomic # 6 Polarization: 12.09 SS G_CDS: 6.31 Total: 18.40 kcal
Atomic # 7 Polarization: -129.56 SS G_CDS: -6.94 Total: -136.51 kcal
Atomic # 8 Polarization: -19.66 SS G_CDS: -0.05 Total: -19.71 kcal
Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal
Total: -74.32 -0.28 -74.60 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001008870604.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 134.991 kcal
(2) G-P(sol) polarization free energy of solvation -74.322 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.669 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.279 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.601 kcal
(6) G-S(sol) free energy of system = (1) + (5) 60.389 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds