Wall clock time and date at job start Sat Apr 11 2020 06:56:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 N 1.30698 * 125.63876 * 2 1
4 4 N 1.39907 * 109.51535 * 180.26436 * 3 2 1
5 5 C 1.36321 * 132.15916 * 179.71094 * 4 3 2
6 6 C 1.35755 * 119.15574 * 180.02562 * 5 4 3
7 7 C 1.39957 * 119.35365 * 0.02562 * 6 5 4
8 8 N 1.31502 * 120.10921 * 0.02562 * 7 6 5
9 9 C 1.33376 * 120.85215 * 359.95512 * 8 7 6
10 10 C 1.40650 * 125.63349 * 179.78527 * 2 1 3
11 11 C 1.46581 * 126.53623 * 0.02562 * 10 2 1
12 12 O 1.21715 * 119.99778 * 269.68319 * 11 10 2
13 13 N 1.34776 * 120.00145 * 89.69223 * 11 10 2
14 14 C 1.46499 * 120.00109 * 179.97438 * 13 11 10
15 15 C 1.52999 * 109.47206 * 179.97438 * 14 13 11
16 16 H 1.09001 * 110.53709 * 303.84069 * 15 14 13
17 17 C 1.54269 * 110.48834 * 66.45235 * 15 14 13
18 18 C 1.53871 * 106.59595 * 142.28983 * 17 15 14
19 19 C 1.54265 * 106.60168 * 359.97438 * 18 17 15
20 20 H 1.09009 * 110.48157 * 95.20443 * 19 18 17
21 21 N 1.46499 * 110.48892 * 217.71152 * 19 18 17
22 22 C 1.36935 * 119.99938 * 273.54846 * 21 19 18
23 23 H 1.08000 * 120.00518 * 359.72965 * 22 21 19
24 24 C 1.38817 * 119.99990 * 179.97438 * 22 21 19
25 25 N 1.31617 * 119.99869 * 0.02562 * 24 22 21
26 26 Si 1.86800 * 119.99909 * 179.97438 * 24 22 21
27 27 H 1.48501 * 109.47361 * 0.02562 * 26 24 22
28 28 H 1.48508 * 109.46860 * 120.00310 * 26 24 22
29 29 H 1.48500 * 109.47264 * 240.00123 * 26 24 22
30 30 C 1.54884 * 104.19587 * 336.39542 * 19 18 17
31 31 H 1.08997 * 109.47448 * 270.21312 * 1 2 3
32 32 H 1.09007 * 109.46944 * 30.21485 * 1 2 3
33 33 H 1.09005 * 109.47302 * 150.21044 * 1 2 3
34 34 H 1.08004 * 120.42151 * 359.97438 * 5 4 3
35 35 H 1.07994 * 120.31813 * 180.02562 * 6 5 4
36 36 H 1.08000 * 119.94574 * 180.02562 * 7 6 5
37 37 H 0.96995 * 119.99823 * 359.97438 * 13 11 10
38 38 H 1.09004 * 109.47176 * 59.99947 * 14 13 11
39 39 H 1.08995 * 109.47188 * 299.99986 * 14 13 11
40 40 H 1.09007 * 110.02833 * 23.00662 * 17 15 14
41 41 H 1.08996 * 110.07247 * 261.60028 * 17 15 14
42 42 H 1.09007 * 110.03164 * 240.71738 * 18 17 15
43 43 H 1.09000 * 110.07324 * 119.31254 * 18 17 15
44 44 H 0.96999 * 119.99984 * 93.54781 * 21 19 18
45 45 H 0.96996 * 119.99743 * 179.97438 * 25 24 22
46 46 H 1.09006 * 110.75837 * 156.25869 * 30 19 18
47 47 H 1.09000 * 110.75472 * 279.62236 * 30 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2686 1.0622 0.0000
4 7 3.6126 0.6737 -0.0061
5 6 4.7722 1.3904 -0.0136
6 6 5.9581 0.7296 -0.0188
7 6 5.9636 -0.6700 -0.0169
8 7 4.8287 -1.3342 -0.0106
9 6 3.6600 -0.6914 -0.0051
10 6 2.3264 -1.1431 0.0043
11 6 1.8776 -2.5385 0.0090
12 8 1.6965 -3.1159 1.0650
13 7 1.6657 -3.1822 -1.1560
14 6 1.2177 -4.5770 -1.1513
15 6 1.0539 -5.0649 -2.5921
16 1 0.3687 -4.4177 -3.1395
17 6 2.4228 -5.1244 -3.3010
18 6 2.3989 -6.3737 -4.1989
19 6 1.0166 -7.0302 -4.0040
20 1 0.3256 -6.7022 -4.7807
21 7 1.1369 -8.4902 -4.0097
22 6 1.1043 -9.1752 -5.1950
23 1 0.9856 -8.6396 -6.1253
24 6 1.2189 -10.5586 -5.2005
25 7 1.3582 -11.2119 -4.0665
26 14 1.1737 -11.4931 -6.8174
27 1 1.0095 -10.5339 -7.9391
28 1 2.4432 -12.2440 -6.9906
29 1 0.0333 -12.4442 -6.8077
30 6 0.5512 -6.5300 -2.6140
31 1 -0.3634 0.0038 1.0276
32 1 -0.3633 0.8881 -0.5172
33 1 -0.3634 -0.8919 -0.5106
34 1 4.7477 2.4701 -0.0162
35 1 6.8880 1.2786 -0.0244
36 1 6.9016 -1.2054 -0.0206
37 1 1.8099 -2.7220 -1.9976
38 1 0.2618 -4.6498 -0.6326
39 1 1.9564 -5.1942 -0.6401
40 1 3.2215 -5.2095 -2.5640
41 1 2.5689 -4.2310 -3.9079
42 1 3.1860 -7.0651 -3.8978
43 1 2.5329 -6.0873 -5.2420
44 1 1.2396 -8.9717 -3.1740
45 1 1.4379 -12.1786 -4.0703
46 1 -0.5353 -6.5667 -2.5341
47 1 1.0178 -7.1108 -1.8183
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001086878751.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:56:37
Heat of formation + Delta-G solvation = 82.549010 kcal
Electronic energy + Delta-G solvation = -28846.643834 eV
Core-core repulsion = 24838.292356 eV
Total energy + Delta-G solvation = -4008.351478 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-42.88021 -39.64911 -38.59839 -37.89893 -34.80898 -34.67323 -33.27617 -32.61972
-30.86969 -30.07739 -29.02374 -28.61403 -27.16284 -25.05393 -24.83897 -23.52273
-22.95437 -21.63529 -20.50184 -19.84965 -19.16150 -18.63832 -17.91363 -17.35815
-17.02937 -16.73247 -16.08925 -15.97467 -15.44002 -15.01361 -14.77016 -14.46270
-13.99681 -13.98235 -13.70852 -13.65770 -13.46531 -13.22518 -12.93359 -12.87309
-12.75038 -12.60302 -12.04511 -11.75661 -11.67425 -11.57312 -11.16978 -10.78303
-10.76146 -10.56801 -10.48702 -10.34196 -10.27785 -10.06030 -10.02314 -9.92201
-9.69429 -9.61178 -9.00289 -8.85320 -8.38691 -6.90497 -5.73138 -3.01428
-0.04751 0.31840 1.45854 1.94027 2.52095 2.84784 3.24561 3.31142
3.45157 3.50612 3.52982 3.64311 3.83110 4.29203 4.41170 4.60921
4.61956 4.76090 4.87227 4.96797 4.99584 5.06895 5.13979 5.16969
5.18376 5.41460 5.46313 5.57123 5.61523 5.74507 5.80114 5.82738
5.94394 6.01969 6.05920 6.12283 6.14081 6.26150 6.39628 6.47544
6.53704 6.64871 6.78401 6.90578 6.93021 7.10395 7.19563 7.51999
7.74500 8.24318 8.45992 9.56744 10.16365 10.50483 11.49662
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.019658 B = 0.001961 C = 0.001870
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1424.032139 B =14277.431896 C =14966.993641
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.081 4.081
2 C 0.158 3.842
3 N -0.312 5.312
4 N -0.306 5.306
5 C 0.168 3.832
6 C -0.226 4.226
7 C 0.188 3.812
8 N -0.459 5.459
9 C 0.298 3.702
10 C -0.279 4.279
11 C 0.607 3.393
12 O -0.533 6.533
13 N -0.715 5.715
14 C 0.127 3.873
15 C -0.103 4.103
16 H 0.077 0.923
17 C -0.116 4.116
18 C -0.145 4.145
19 C 0.177 3.823
20 H 0.051 0.949
21 N -0.722 5.722
22 C -0.236 4.236
23 H 0.070 0.930
24 C -0.016 4.016
25 N -0.933 5.933
26 Si 0.905 3.095
27 H -0.281 1.281
28 H -0.292 1.292
29 H -0.292 1.292
30 C -0.119 4.119
31 H 0.091 0.909
32 H 0.085 0.915
33 H 0.087 0.913
34 H 0.183 0.817
35 H 0.172 0.828
36 H 0.185 0.815
37 H 0.399 0.601
38 H 0.068 0.932
39 H 0.071 0.929
40 H 0.060 0.940
41 H 0.051 0.949
42 H 0.066 0.934
43 H 0.050 0.950
44 H 0.384 0.616
45 H 0.254 0.746
46 H 0.065 0.935
47 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.964 31.062 8.539 32.958
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.002 4.002
3 N -0.136 5.136
4 N -0.074 5.074
5 C 0.032 3.968
6 C -0.249 4.249
7 C 0.005 3.995
8 N -0.170 5.170
9 C 0.068 3.932
10 C -0.295 4.295
11 C 0.391 3.609
12 O -0.410 6.410
13 N -0.366 5.366
14 C 0.004 3.996
15 C -0.122 4.122
16 H 0.095 0.905
17 C -0.154 4.154
18 C -0.185 4.185
19 C 0.066 3.934
20 H 0.069 0.931
21 N -0.362 5.362
22 C -0.368 4.368
23 H 0.088 0.912
24 C -0.212 4.212
25 N -0.581 5.581
26 Si 0.737 3.263
27 H -0.206 1.206
28 H -0.219 1.219
29 H -0.219 1.219
30 C -0.158 4.158
31 H 0.110 0.890
32 H 0.104 0.896
33 H 0.105 0.895
34 H 0.200 0.800
35 H 0.189 0.811
36 H 0.202 0.798
37 H 0.233 0.767
38 H 0.086 0.914
39 H 0.089 0.911
40 H 0.078 0.922
41 H 0.070 0.930
42 H 0.085 0.915
43 H 0.068 0.932
44 H 0.218 0.782
45 H 0.064 0.936
46 H 0.083 0.917
47 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 6.467 30.886 9.121 32.848
hybrid contribution 0.540 -0.363 -1.036 1.224
sum 7.007 30.523 8.085 32.344
Atomic orbital electron populations
1.20412 0.84729 1.04408 1.04413 1.22424 0.97326 0.88270 0.92198
1.77544 0.82352 1.21203 1.32494 1.46858 1.06705 1.07123 1.46743
1.22149 0.81641 0.99646 0.93376 1.21911 0.98228 0.96360 1.08447
1.23570 0.96608 0.91605 0.87718 1.68201 0.96150 1.37313 1.15364
1.20324 0.93758 0.80555 0.98567 1.19285 0.88832 0.95065 1.26348
1.16746 0.76540 0.83828 0.83816 1.90820 1.51257 1.67652 1.31227
1.46020 1.68478 1.13938 1.08164 1.21529 1.00132 0.80644 0.97281
1.22186 0.98089 0.98034 0.93881 0.90460 1.22182 0.96164 0.98496
0.98592 1.22925 1.01711 0.95848 0.98045 1.21025 0.93159 0.85400
0.93800 0.93141 1.42446 1.87216 0.99733 1.06848 1.19296 1.41652
0.89368 0.86462 0.91201 1.24752 1.03123 0.96504 0.96784 1.69671
1.57168 1.07151 1.24135 0.86137 0.77153 0.79942 0.83087 1.20609
1.21936 1.21920 1.22705 1.00376 0.93162 0.99555 0.89034 0.89637
0.89453 0.80000 0.81086 0.79815 0.76667 0.91356 0.91105 0.92166
0.93020 0.91503 0.93154 0.78180 0.93594 0.91654 0.91049
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.61 10.26 36.01 0.37 -0.25 16
2 C 0.16 1.73 7.22 -82.16 -0.59 1.14 16
3 N -0.31 -3.41 12.58 33.80 0.43 -2.99 16
4 N -0.31 -3.04 3.86 -11.97 -0.05 -3.09 16
5 C 0.17 0.89 11.29 -16.45 -0.19 0.71 16
6 C -0.23 -0.76 10.05 -39.83 -0.40 -1.16 16
7 C 0.19 1.12 11.28 -17.05 -0.19 0.92 16
8 N -0.46 -5.07 10.47 -12.00 -0.13 -5.20 16
9 C 0.30 3.60 7.90 -155.84 -1.23 2.37 16
10 C -0.28 -3.59 5.91 -104.65 -0.62 -4.21 16
11 C 0.61 8.75 7.28 -12.90 -0.09 8.66 16
12 O -0.53 -9.75 17.11 5.18 0.09 -9.66 16
13 N -0.72 -8.72 5.39 -61.65 -0.33 -9.05 16
14 C 0.13 1.66 4.99 -4.04 -0.02 1.64 16
15 C -0.10 -1.34 2.93 -88.95 -0.26 -1.60 16
16 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16
17 C -0.12 -1.62 6.05 -25.61 -0.15 -1.78 16
18 C -0.14 -2.57 6.53 -25.62 -0.17 -2.74 16
19 C 0.18 3.49 3.50 -66.28 -0.23 3.26 16
20 H 0.05 1.01 8.11 -51.92 -0.42 0.59 16
21 N -0.72 -18.23 5.16 -51.82 -0.27 -18.50 16
22 C -0.24 -6.61 9.97 -15.06 -0.15 -6.76 16
23 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16
24 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16
25 N -0.93 -28.49 13.06 55.49 0.72 -27.76 16
26 Si 0.91 22.59 29.55 -169.99 -5.02 17.56 16
27 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
28 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16
29 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16
30 C -0.12 -1.93 5.92 -24.73 -0.15 -2.08 16
31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16
32 H 0.08 0.50 8.14 -51.92 -0.42 0.07 16
33 H 0.09 0.63 7.97 -51.93 -0.41 0.21 16
34 H 0.18 0.32 8.06 -52.48 -0.42 -0.10 16
35 H 0.17 -0.13 8.06 -52.49 -0.42 -0.55 16
36 H 0.18 0.43 8.06 -52.49 -0.42 0.00 16
37 H 0.40 4.11 8.30 -40.82 -0.34 3.77 16
38 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16
39 H 0.07 1.05 8.05 -51.93 -0.42 0.63 16
40 H 0.06 0.87 7.77 -51.93 -0.40 0.46 16
41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16
42 H 0.07 1.34 8.04 -51.92 -0.42 0.92 16
43 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16
44 H 0.38 10.33 7.73 -40.82 -0.32 10.02 16
45 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16
46 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16
47 H 0.07 1.22 7.94 -51.93 -0.41 0.81 16
LS Contribution 396.29 15.07 5.97 5.97
Total: -1.00 -37.76 396.29 -9.67 -47.43
By element:
Atomic # 1 Polarization: 14.63 SS G_CDS: -6.91 Total: 7.71 kcal
Atomic # 6 Polarization: 1.74 SS G_CDS: -4.17 Total: -2.44 kcal
Atomic # 7 Polarization: -66.97 SS G_CDS: 0.38 Total: -66.59 kcal
Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal
Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.56 kcal
Total LS contribution 5.97 Total: 5.97 kcal
Total: -37.76 -9.67 -47.43 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001086878751.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 129.983 kcal
(2) G-P(sol) polarization free energy of solvation -37.762 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.221 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.672 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.434 kcal
(6) G-S(sol) free energy of system = (1) + (5) 82.549 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds