Wall clock time and date at job start Sat Apr 11 2020 06:57:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50708 * 1
3 3 N 1.30197 * 126.20700 * 2 1
4 4 N 1.39799 * 110.13208 * 180.02562 * 3 2 1
5 5 C 1.46500 * 125.33764 * 180.02562 * 4 3 2
6 6 C 1.36627 * 109.32011 * 0.02562 * 4 3 2
7 7 N 1.32928 * 133.26973 * 180.02562 * 6 4 3
8 8 C 1.31191 * 121.84543 * 179.73570 * 7 6 4
9 9 C 1.40186 * 121.37131 * 0.50379 * 8 7 6
10 10 C 1.47686 * 120.41129 * 179.76421 * 9 8 7
11 11 O 1.21566 * 120.00503 * 179.44997 * 10 9 8
12 12 N 1.34777 * 119.99725 * 359.71946 * 10 9 8
13 13 C 1.46506 * 120.00271 * 179.97438 * 12 10 9
14 14 C 1.53002 * 109.47433 * 180.02562 * 13 12 10
15 15 C 1.53775 * 113.61693 * 274.14077 * 14 13 12
16 16 C 1.53948 * 87.02059 * 220.04847 * 15 14 13
17 17 N 1.46497 * 113.53611 * 270.81121 * 16 15 14
18 18 C 1.36940 * 120.00179 * 252.49232 * 17 16 15
19 19 H 1.08000 * 119.99775 * 0.02562 * 18 17 16
20 20 C 1.38812 * 120.00120 * 180.02562 * 18 17 16
21 21 N 1.31620 * 120.00227 * 359.97438 * 20 18 17
22 22 Si 1.86797 * 119.99870 * 180.02562 * 20 18 17
23 23 H 1.48498 * 109.47391 * 90.00135 * 22 20 18
24 24 H 1.48502 * 109.46977 * 209.99853 * 22 20 18
25 25 H 1.48497 * 109.47397 * 329.99722 * 22 20 18
26 26 C 1.53774 * 113.61221 * 176.52865 * 14 13 12
27 27 C 1.39504 * 119.18317 * 359.48887 * 9 8 7
28 28 C 1.39655 * 117.94987 * 0.25294 * 27 9 8
29 29 H 1.08996 * 109.47101 * 269.98012 * 1 2 3
30 30 H 1.08998 * 109.46776 * 29.97897 * 1 2 3
31 31 H 1.09000 * 109.46621 * 149.97398 * 1 2 3
32 32 H 1.08998 * 109.47272 * 269.97455 * 5 4 3
33 33 H 1.09000 * 109.47281 * 29.98189 * 5 4 3
34 34 H 1.09006 * 109.46742 * 149.97966 * 5 4 3
35 35 H 1.08000 * 119.31530 * 180.27005 * 8 7 6
36 36 H 0.97008 * 120.00332 * 0.02562 * 12 10 9
37 37 H 1.08996 * 109.47365 * 300.00749 * 13 12 10
38 38 H 1.09000 * 109.46679 * 60.00307 * 13 12 10
39 39 H 1.09006 * 112.84292 * 45.33698 * 14 13 12
40 40 H 1.09005 * 113.61733 * 334.56998 * 15 14 13
41 41 H 1.09002 * 113.61598 * 105.46968 * 15 14 13
42 42 H 1.08998 * 113.74515 * 139.94347 * 16 15 14
43 43 H 0.96998 * 120.00368 * 72.49553 * 17 16 15
44 44 H 0.97000 * 120.00278 * 179.97438 * 21 20 18
45 45 H 1.08995 * 113.62134 * 254.52917 * 26 14 13
46 46 H 1.08996 * 113.61752 * 25.44014 * 26 14 13
47 47 H 1.07998 * 121.02887 * 180.22564 * 27 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 7 2.2762 1.0505 0.0000
4 7 3.6195 0.6634 -0.0006
5 6 4.7646 1.5772 -0.0002
6 6 3.6968 -0.7006 -0.0016
7 7 4.7148 -1.5555 -0.0020
8 6 4.5281 -2.8541 0.0022
9 6 3.2396 -3.4062 -0.0032
10 6 3.0540 -4.8713 -0.0036
11 8 1.9333 -5.3422 0.0018
12 7 4.1273 -5.6865 -0.0044
13 6 3.9434 -7.1399 -0.0043
14 6 5.3104 -7.8271 -0.0047
15 6 5.9061 -8.0130 -1.4102
16 6 6.3803 -9.3995 -0.9383
17 7 7.7096 -9.3849 -0.3228
18 6 8.7803 -9.9136 -0.9931
19 1 8.6448 -10.3410 -1.9757
20 6 10.0398 -9.9003 -0.4097
21 7 10.2051 -9.3791 0.7875
22 14 11.5005 -10.6208 -1.3244
23 1 12.1421 -9.5623 -2.1447
24 1 12.4833 -11.1531 -0.3465
25 1 11.0374 -11.7201 -2.2089
26 6 5.2292 -9.3603 0.0808
27 6 2.1346 -2.5546 -0.0024
28 6 2.3693 -1.1779 -0.0016
29 1 -0.3633 -0.0004 1.0276
30 1 -0.3633 0.8902 -0.5135
31 1 -0.3632 -0.8898 -0.5143
32 1 5.0487 1.8042 -1.0278
33 1 4.4936 2.4992 0.5140
34 1 5.6037 1.1078 0.5134
35 1 5.3850 -3.5114 0.0061
36 1 5.0217 -5.3108 -0.0044
37 1 3.3886 -7.4359 0.8861
38 1 3.3874 -7.4358 -0.8938
39 1 6.0059 -7.3862 0.7095
40 1 5.1563 -8.0535 -2.2004
41 1 6.7210 -7.3245 -1.6336
42 1 6.2708 -10.1804 -1.6908
43 1 7.8314 -9.0009 0.5595
44 1 11.0851 -9.3701 1.1954
45 1 5.4985 -9.7581 1.0591
46 1 4.2940 -9.7700 -0.3010
47 1 1.1288 -2.9477 -0.0028
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001091173027.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:57:21
Heat of formation + Delta-G solvation = 74.250359 kcal
Electronic energy + Delta-G solvation = -28312.438560 eV
Core-core repulsion = 24303.727225 eV
Total energy + Delta-G solvation = -4008.711335 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-42.80010 -41.01516 -39.92767 -38.86117 -36.04850 -35.48222 -34.97048 -33.03974
-32.19816 -31.49667 -30.48749 -28.76735 -26.84679 -26.38420 -25.66963 -25.06587
-24.41334 -22.97178 -21.85202 -21.03750 -19.93356 -19.35356 -18.92109 -18.56206
-17.85673 -17.11248 -16.92884 -16.74871 -16.48140 -16.33567 -15.73916 -15.65164
-14.94010 -14.82917 -14.76628 -14.57879 -14.49591 -14.35506 -14.24343 -14.17655
-13.68910 -13.67633 -13.24058 -13.19261 -12.91553 -12.89151 -12.76021 -12.59658
-12.16239 -12.14866 -12.03856 -11.59865 -11.56448 -11.43809 -11.23435 -10.89018
-10.78474 -10.58832 -10.25515 -10.07017 -9.38290 -8.96499 -7.93367 -5.20926
-0.41725 -0.37492 1.00682 1.22455 1.49531 1.50151 1.58633 1.74573
2.09764 2.57465 2.66654 2.91616 3.08461 3.30859 3.39413 3.58350
3.67608 3.76868 3.84724 3.87101 3.96566 4.07897 4.19571 4.26109
4.33161 4.37690 4.39446 4.46584 4.60391 4.75063 4.76227 4.77465
4.80425 4.86701 4.96173 4.98853 5.05225 5.12353 5.16631 5.30845
5.38812 5.40490 5.50628 5.58583 5.61245 5.71406 6.25824 6.30666
6.48693 6.65048 7.14384 7.35813 8.14021 8.35750 9.29757
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.015610 B = 0.001945 C = 0.001762
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1793.311532 B =14392.583345 C =15889.981945
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 C 0.124 3.876
3 N -0.265 5.265
4 N -0.399 5.399
5 C 0.104 3.896
6 C 0.312 3.688
7 N -0.520 5.520
8 C 0.210 3.790
9 C -0.242 4.242
10 C 0.574 3.426
11 O -0.574 6.574
12 N -0.712 5.712
13 C 0.141 3.859
14 C -0.103 4.103
15 C -0.154 4.154
16 C 0.141 3.859
17 N -0.719 5.719
18 C -0.240 4.240
19 H 0.076 0.924
20 C -0.076 4.076
21 N -0.968 5.968
22 Si 0.971 3.029
23 H -0.288 1.288
24 H -0.297 1.297
25 H -0.270 1.270
26 C -0.134 4.134
27 C 0.079 3.921
28 C -0.248 4.248
29 H 0.103 0.897
30 H 0.093 0.907
31 H 0.101 0.899
32 H 0.082 0.918
33 H 0.104 0.896
34 H 0.095 0.905
35 H 0.191 0.809
36 H 0.410 0.590
37 H 0.068 0.932
38 H 0.073 0.927
39 H 0.083 0.917
40 H 0.092 0.908
41 H 0.049 0.951
42 H 0.058 0.942
43 H 0.375 0.625
44 H 0.250 0.750
45 H 0.057 0.943
46 H 0.106 0.894
47 H 0.167 0.833
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.977 20.507 -1.506 28.669
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.055 4.055
3 N -0.079 5.079
4 N -0.188 5.188
5 C -0.036 4.036
6 C 0.072 3.928
7 N -0.235 5.235
8 C 0.039 3.961
9 C -0.250 4.250
10 C 0.361 3.639
11 O -0.455 6.455
12 N -0.363 5.363
13 C 0.018 3.982
14 C -0.122 4.122
15 C -0.194 4.194
16 C 0.032 3.968
17 N -0.358 5.358
18 C -0.372 4.372
19 H 0.094 0.906
20 C -0.268 4.268
21 N -0.619 5.619
22 Si 0.800 3.200
23 H -0.215 1.215
24 H -0.224 1.224
25 H -0.195 1.195
26 C -0.173 4.173
27 C 0.050 3.950
28 C -0.258 4.258
29 H 0.121 0.879
30 H 0.112 0.888
31 H 0.120 0.880
32 H 0.100 0.900
33 H 0.123 0.877
34 H 0.113 0.887
35 H 0.208 0.792
36 H 0.247 0.753
37 H 0.086 0.914
38 H 0.091 0.909
39 H 0.101 0.899
40 H 0.110 0.890
41 H 0.068 0.932
42 H 0.077 0.923
43 H 0.207 0.793
44 H 0.059 0.941
45 H 0.076 0.924
46 H 0.124 0.876
47 H 0.185 0.815
Dipole moment (debyes) X Y Z Total
from point charges -19.613 21.911 -1.646 29.453
hybrid contribution 1.203 -1.119 0.076 1.645
sum -18.411 20.792 -1.570 27.816
Atomic orbital electron populations
1.20546 0.82131 1.05634 1.05314 1.24219 0.98529 0.87073 0.95630
1.76691 0.86507 1.23509 1.21155 1.48410 1.05358 1.01699 1.63302
1.22094 0.83882 0.93235 1.04386 1.19488 0.91014 0.87069 0.95219
1.66735 1.33066 1.03479 1.20178 1.23249 0.96390 0.89308 0.87168
1.20568 0.95391 0.93777 1.15216 1.17905 0.84403 0.85819 0.75723
1.90755 1.24951 1.77531 1.52288 1.45886 1.09201 1.07200 1.74029
1.21361 0.96520 0.78060 1.02295 1.22503 0.95340 0.95989 0.98328
1.23742 0.99863 0.99669 0.96141 1.21443 0.84465 0.95818 0.95119
1.42298 1.03244 1.70809 1.19411 1.19661 0.87925 1.29951 0.99644
0.90616 1.25521 1.00335 1.03105 0.97834 1.69802 1.22682 1.52614
1.16776 0.85178 0.79426 0.78093 0.77297 1.21538 1.22427 1.19517
1.23337 0.99419 0.94703 0.99858 1.21303 1.00432 0.89135 0.84088
1.20553 0.93815 0.95161 1.16309 0.87881 0.88778 0.88045 0.89990
0.87723 0.88674 0.79218 0.75295 0.91378 0.90910 0.89865 0.88975
0.93231 0.92350 0.79311 0.94092 0.92415 0.87550 0.81537
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.63 10.48 71.24 0.75 0.12 16
2 C 0.12 2.13 7.44 44.81 0.33 2.46 16
3 N -0.26 -5.37 12.39 -43.68 -0.54 -5.91 16
4 N -0.40 -8.25 4.03 -366.43 -1.48 -9.73 16
5 C 0.10 1.38 11.43 127.77 1.46 2.84 16
6 C 0.31 7.15 7.96 134.18 1.07 8.22 16
7 N -0.52 -11.81 10.37 -191.96 -1.99 -13.80 16
8 C 0.21 4.07 10.69 85.26 0.91 4.98 16
9 C -0.24 -4.96 5.89 -20.00 -0.12 -5.07 16
10 C 0.57 13.41 7.77 86.74 0.67 14.08 16
11 O -0.57 -16.86 16.40 -3.92 -0.06 -16.92 16
12 N -0.71 -14.81 5.51 -466.12 -2.57 -17.38 16
13 C 0.14 3.17 5.50 86.38 0.47 3.64 16
14 C -0.10 -2.69 3.62 -10.27 -0.04 -2.73 16
15 C -0.15 -4.57 7.44 31.18 0.23 -4.34 16
16 C 0.14 5.17 4.57 45.58 0.21 5.38 16
17 N -0.72 -34.61 5.31 -320.17 -1.70 -36.31 16
18 C -0.24 -12.95 9.97 84.03 0.84 -12.12 16
19 H 0.08 3.94 7.83 -2.91 -0.02 3.91 16
20 C -0.08 -4.25 5.50 84.86 0.47 -3.79 16
21 N -0.97 -57.93 13.06 21.65 0.28 -57.65 16
22 Si 0.97 45.38 29.55 68.60 2.03 47.41 16
23 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16
24 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16
25 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16
26 C -0.13 -3.84 7.39 31.12 0.23 -3.61 16
27 C 0.08 1.51 9.76 22.92 0.22 1.74 16
28 C -0.25 -5.06 6.33 -20.24 -0.13 -5.19 16
29 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16
30 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16
31 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16
32 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16
33 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16
34 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16
35 H 0.19 2.67 6.39 -2.91 -0.02 2.65 16
36 H 0.41 7.09 6.51 -92.70 -0.60 6.49 16
37 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16
38 H 0.07 1.64 7.88 -2.39 -0.02 1.62 16
39 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16
40 H 0.09 2.33 7.92 -2.38 -0.02 2.31 16
41 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16
42 H 0.06 2.16 8.10 -2.39 -0.02 2.14 16
43 H 0.37 19.30 7.90 -92.71 -0.73 18.56 16
44 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16
45 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16
46 H 0.11 2.47 8.10 -2.39 -0.02 2.45 16
47 H 0.17 2.66 7.72 -2.91 -0.02 2.64 16
Total: -1.00 -73.44 397.75 1.23 -72.20
By element:
Atomic # 1 Polarization: 31.79 SS G_CDS: -0.32 Total: 31.47 kcal
Atomic # 6 Polarization: -0.96 SS G_CDS: 7.58 Total: 6.62 kcal
Atomic # 7 Polarization: -132.79 SS G_CDS: -7.99 Total: -140.78 kcal
Atomic # 8 Polarization: -16.86 SS G_CDS: -0.06 Total: -16.92 kcal
Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal
Total: -73.44 1.23 -72.20 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001091173027.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 146.453 kcal
(2) G-P(sol) polarization free energy of solvation -73.436 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.017 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.233 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.203 kcal
(6) G-S(sol) free energy of system = (1) + (5) 74.250 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds