Wall clock time and date at job start Sat Apr 11 2020 06:56:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50707 * 1
3 3 C 1.40342 * 119.85155 * 2 1
4 4 C 1.35455 * 119.46208 * 180.02562 * 3 2 1
5 5 C 1.50704 * 120.42251 * 179.97438 * 4 3 2
6 6 N 1.36660 * 119.14438 * 359.97438 * 4 3 2
7 7 N 1.39959 * 132.34256 * 180.02562 * 6 4 3
8 8 C 1.32373 * 108.72859 * 179.71825 * 7 6 4
9 9 C 1.47882 * 125.68876 * 180.28225 * 8 7 6
10 10 O 1.21553 * 119.99611 * 173.53220 * 9 8 7
11 11 N 1.34771 * 120.00333 * 353.52512 * 9 8 7
12 12 C 1.47084 * 120.88134 * 183.62041 * 11 9 8
13 13 C 1.53692 * 108.27773 * 128.75484 * 12 11 9
14 14 N 1.46898 * 109.25911 * 54.07969 * 13 12 11
15 15 C 1.46898 * 111.00061 * 172.60722 * 14 13 12
16 16 C 1.50698 * 109.47281 * 294.29992 * 15 14 13
17 17 H 1.08003 * 120.00037 * 0.02562 * 16 15 14
18 18 C 1.37877 * 120.00183 * 179.97438 * 16 15 14
19 19 N 1.31511 * 120.00278 * 0.02562 * 18 16 15
20 20 Si 1.86806 * 120.00079 * 180.02562 * 18 16 15
21 21 H 1.48503 * 109.47117 * 0.02562 * 20 18 16
22 22 H 1.48504 * 109.46823 * 119.99993 * 20 18 16
23 23 H 1.48495 * 109.47184 * 240.00157 * 20 18 16
24 24 C 1.46896 * 111.27088 * 296.75720 * 14 13 12
25 25 C 1.47080 * 120.88321 * 3.89163 * 11 9 8
26 26 C 1.39894 * 108.61189 * 0.40515 * 8 7 6
27 27 C 1.37256 * 119.75718 * 0.02562 * 6 4 3
28 28 N 1.31128 * 119.85035 * 180.02562 * 2 1 3
29 29 H 1.08995 * 109.47098 * 89.99798 * 1 2 3
30 30 H 1.09007 * 109.47075 * 210.00134 * 1 2 3
31 31 H 1.08997 * 109.46893 * 329.99793 * 1 2 3
32 32 H 1.08002 * 120.26404 * 359.97438 * 3 2 1
33 33 H 1.08990 * 109.47202 * 270.01605 * 5 4 3
34 34 H 1.08999 * 109.47603 * 30.02592 * 5 4 3
35 35 H 1.09010 * 109.46580 * 150.01960 * 5 4 3
36 36 H 1.09005 * 109.62570 * 248.52091 * 12 11 9
37 37 H 1.08997 * 109.62893 * 9.09915 * 12 11 9
38 38 H 1.09003 * 109.64910 * 294.07815 * 13 12 11
39 39 H 1.09006 * 109.42171 * 173.94350 * 13 12 11
40 40 H 1.08997 * 109.46884 * 54.30221 * 15 14 13
41 41 H 1.08998 * 109.47066 * 174.30576 * 15 14 13
42 42 H 0.97002 * 120.00569 * 179.97438 * 19 18 16
43 43 H 1.09006 * 109.49220 * 303.14682 * 24 14 13
44 44 H 1.08994 * 109.49533 * 183.06204 * 24 14 13
45 45 H 1.09003 * 109.62547 * 350.90230 * 25 11 9
46 46 H 1.09007 * 109.62744 * 111.47489 * 25 11 9
47 47 H 1.08009 * 126.19907 * 179.85368 * 26 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.2056 1.2172 0.0000
4 6 3.5601 1.2080 -0.0005
5 6 4.3321 2.5023 -0.0011
6 7 4.2176 0.0099 -0.0005
7 7 5.5780 -0.3189 -0.0005
8 6 5.6966 -1.6373 0.0057
9 6 6.9702 -2.3889 0.0137
10 8 6.9614 -3.5980 0.1375
11 7 8.1404 -1.7332 -0.1164
12 6 9.4129 -2.4673 -0.1903
13 6 10.1852 -1.9702 -1.4225
14 7 10.3151 -0.5085 -1.3558
15 6 11.1954 -0.0090 -2.4204
16 6 12.5973 -0.5117 -2.1901
17 1 12.8127 -1.1397 -1.3383
18 6 13.6048 -0.1706 -3.0674
19 7 13.3426 0.5937 -4.1050
20 14 15.3425 -0.7943 -2.7823
21 1 15.3734 -1.6299 -1.5550
22 1 15.7730 -1.6095 -3.9465
23 1 16.2622 0.3601 -2.6190
24 6 9.0011 0.1462 -1.4089
25 6 8.1797 -0.2644 -0.1822
26 6 4.4162 -2.2008 0.0005
27 6 3.5007 -1.1605 -0.0005
28 7 2.1597 -1.1373 -0.0005
29 1 -0.3633 0.0000 -1.0276
30 1 -0.3633 -0.8900 0.5139
31 1 -0.3633 0.8900 0.5139
32 1 1.6675 2.1536 -0.0004
33 1 4.5175 2.8143 -1.0288
34 1 3.7543 3.2703 0.5131
35 1 5.2830 2.3584 0.5121
36 1 9.9963 -2.2803 0.7113
37 1 9.2147 -3.5347 -0.2867
38 1 9.6464 -2.2465 -2.3289
39 1 11.1766 -2.4231 -1.4359
40 1 10.8359 -0.3648 -3.3859
41 1 11.1943 1.0809 -2.4114
42 1 14.0515 0.8340 -4.7220
43 1 8.4787 -0.1596 -2.3154
44 1 9.1336 1.2280 -1.4123
45 1 7.1657 0.1252 -0.2733
46 1 8.6468 0.1302 0.7202
47 1 4.1834 -3.2555 0.0013
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001150588173.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:56:03
Heat of formation + Delta-G solvation = 105.730393 kcal
Electronic energy + Delta-G solvation = -29679.169209 eV
Core-core repulsion = 25671.822951 eV
Total energy + Delta-G solvation = -4007.346258 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-42.68155 -40.07699 -38.44267 -37.44754 -35.43101 -34.49168 -32.74301 -32.31705
-30.85162 -30.47268 -28.74986 -28.46778 -27.99065 -25.83768 -24.62985 -23.26756
-22.42432 -22.19833 -21.45967 -20.36119 -19.15544 -18.34435 -17.93981 -16.62768
-16.39269 -15.96995 -15.77071 -15.49081 -15.19459 -14.76440 -14.72812 -14.34018
-14.21642 -13.90452 -13.85599 -13.70944 -13.57625 -13.49675 -13.41248 -12.92469
-12.85818 -12.63053 -12.39375 -12.12267 -12.04099 -11.51480 -11.25326 -11.13629
-10.92060 -10.84809 -10.73105 -10.57695 -10.54617 -10.22895 -9.99006 -9.75389
-9.67578 -9.23234 -8.53723 -8.45158 -8.19833 -7.31684 -6.06141 -4.07809
0.12352 0.40252 1.56696 1.63681 2.91905 2.96650 3.29494 3.29685
3.37165 3.39512 3.41908 3.60711 3.81743 4.36599 4.39994 4.43815
4.69947 4.75549 4.81807 4.90030 4.94092 5.03194 5.10692 5.14649
5.20595 5.29699 5.36294 5.43365 5.46015 5.53131 5.63407 5.68056
5.78233 5.85030 5.94040 6.00247 6.03219 6.25577 6.35169 6.43810
6.54403 6.73308 6.98748 7.22606 7.28916 7.30316 7.47154 7.75396
8.01604 8.10111 8.13219 8.48336 8.99857 9.56823 11.04717
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.021240 B = 0.002332 C = 0.002159
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1317.964257 B =12003.038075 C =12964.443078
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.106 4.106
2 C 0.207 3.793
3 C -0.228 4.228
4 C 0.198 3.802
5 C -0.123 4.123
6 N -0.311 5.311
7 N -0.278 5.278
8 C 0.087 3.913
9 C 0.592 3.408
10 O -0.528 6.528
11 N -0.588 5.588
12 C 0.115 3.885
13 C 0.051 3.949
14 N -0.536 5.536
15 C 0.193 3.807
16 C -0.508 4.508
17 H 0.065 0.935
18 C 0.055 3.945
19 N -0.898 5.898
20 Si 0.898 3.102
21 H -0.271 1.271
22 H -0.285 1.285
23 H -0.284 1.284
24 C 0.044 3.956
25 C 0.085 3.915
26 C -0.206 4.206
27 C 0.263 3.737
28 N -0.467 5.467
29 H 0.090 0.910
30 H 0.085 0.915
31 H 0.085 0.915
32 H 0.167 0.833
33 H 0.097 0.903
34 H 0.096 0.904
35 H 0.091 0.909
36 H 0.078 0.922
37 H 0.091 0.909
38 H 0.026 0.974
39 H 0.099 0.901
40 H -0.009 1.009
41 H 0.031 0.969
42 H 0.261 0.739
43 H 0.024 0.976
44 H 0.080 0.920
45 H 0.128 0.872
46 H 0.075 0.925
47 H 0.172 0.828
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -26.463 4.420 9.191 28.361
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.043 3.957
3 C -0.252 4.252
4 C 0.083 3.917
5 C -0.180 4.180
6 N -0.083 5.083
7 N -0.107 5.107
8 C -0.072 4.072
9 C 0.376 3.624
10 O -0.403 6.403
11 N -0.320 5.320
12 C -0.007 4.007
13 C -0.078 4.078
14 N -0.262 5.262
15 C 0.069 3.931
16 C -0.547 4.547
17 H 0.083 0.917
18 C -0.147 4.147
19 N -0.538 5.538
20 Si 0.726 3.274
21 H -0.196 1.196
22 H -0.211 1.211
23 H -0.210 1.210
24 C -0.086 4.086
25 C -0.039 4.039
26 C -0.237 4.237
27 C 0.037 3.963
28 N -0.181 5.181
29 H 0.108 0.892
30 H 0.104 0.896
31 H 0.104 0.896
32 H 0.184 0.816
33 H 0.115 0.885
34 H 0.114 0.886
35 H 0.110 0.890
36 H 0.096 0.904
37 H 0.109 0.891
38 H 0.044 0.956
39 H 0.117 0.883
40 H 0.009 0.991
41 H 0.049 0.951
42 H 0.070 0.930
43 H 0.043 0.957
44 H 0.099 0.901
45 H 0.144 0.856
46 H 0.093 0.907
47 H 0.189 0.811
Dipole moment (debyes) X Y Z Total
from point charges -25.653 4.071 9.547 27.673
hybrid contribution 0.670 -0.231 -0.881 1.130
sum -24.983 3.840 8.666 26.721
Atomic orbital electron populations
1.20822 0.86922 1.04494 1.04120 1.21914 0.97834 0.87407 0.88565
1.21508 0.91612 1.01173 1.10917 1.20818 0.91900 0.86449 0.92563
1.21055 1.01208 0.90630 1.05059 1.47550 1.07450 1.06011 1.47335
1.77883 0.88589 1.13590 1.30662 1.22187 0.95428 0.90803 0.98774
1.17021 0.81403 0.86125 0.77847 1.90794 1.86172 1.12796 1.50560
1.48126 1.05864 1.08450 1.69537 1.22081 0.82155 0.96619 0.99813
1.22433 1.00616 0.90234 0.94509 1.62103 1.09552 1.03683 1.50825
1.19726 0.91037 0.95825 0.86549 1.21186 0.92570 1.31021 1.09882
0.91693 1.25000 0.99277 0.95289 0.95085 1.69965 1.33037 1.36694
1.14080 0.86435 0.84223 0.78601 0.78127 1.19587 1.21119 1.21026
1.22367 0.90942 0.99795 0.95461 1.22862 1.03398 0.78270 0.99376
1.20891 0.87678 0.99262 1.15910 1.20514 0.88180 0.86445 1.01205
1.68063 1.03771 1.28878 1.17370 0.89167 0.89566 0.89629 0.81591
0.88501 0.88584 0.88982 0.90391 0.89113 0.95618 0.88263 0.99136
0.95062 0.92954 0.95742 0.90128 0.85558 0.90715 0.81078
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.40 10.19 36.01 0.37 -0.03 16
2 C 0.21 1.60 6.83 -82.10 -0.56 1.04 16
3 C -0.23 -1.40 9.37 -39.78 -0.37 -1.77 16
4 C 0.20 1.67 6.86 -81.43 -0.56 1.11 16
5 C -0.12 -0.67 10.09 36.01 0.36 -0.31 16
6 N -0.31 -3.82 3.90 -8.49 -0.03 -3.85 16
7 N -0.28 -3.88 8.81 33.23 0.29 -3.59 16
8 C 0.09 1.33 6.84 -83.07 -0.57 0.76 16
9 C 0.59 10.10 7.71 -12.32 -0.09 10.01 16
10 O -0.53 -10.07 16.36 5.32 0.09 -9.98 16
11 N -0.59 -9.83 3.00 -173.28 -0.52 -10.35 16
12 C 0.12 1.95 6.62 -3.36 -0.02 1.93 16
13 C 0.05 1.01 5.47 -3.47 -0.02 0.99 16
14 N -0.54 -11.43 4.62 -235.47 -1.09 -12.52 16
15 C 0.19 4.98 4.72 -4.98 -0.02 4.95 16
16 C -0.51 -14.03 8.41 -34.44 -0.29 -14.32 16
17 H 0.06 1.77 7.13 -52.48 -0.37 1.39 16
18 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16
19 N -0.90 -26.49 13.29 55.43 0.74 -25.75 16
20 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16
21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16
22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16
24 C 0.04 0.79 5.62 -3.70 -0.02 0.77 16
25 C 0.08 1.32 6.45 -3.60 -0.02 1.29 16
26 C -0.21 -2.98 10.66 -38.84 -0.41 -3.39 16
27 C 0.26 3.51 7.90 -155.42 -1.23 2.28 16
28 N -0.47 -5.39 10.40 -8.47 -0.09 -5.48 16
29 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16
30 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16
31 H 0.08 0.11 8.09 -51.93 -0.42 -0.31 16
32 H 0.17 0.34 8.06 -52.49 -0.42 -0.08 16
33 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16
34 H 0.10 0.24 8.09 -51.93 -0.42 -0.18 16
35 H 0.09 0.62 8.12 -51.92 -0.42 0.20 16
36 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16
37 H 0.09 1.50 7.08 -51.93 -0.37 1.13 16
38 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16
39 H 0.10 2.05 6.67 -51.93 -0.35 1.70 16
40 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16
41 H 0.03 0.85 7.97 -51.93 -0.41 0.44 16
42 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16
43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16
44 H 0.08 1.38 7.99 -51.93 -0.41 0.96 16
45 H 0.13 1.84 3.77 -114.83 -0.43 1.40 16
46 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16
47 H 0.17 2.32 8.06 -52.48 -0.42 1.90 16
LS Contribution 384.88 15.07 5.80 5.80
Total: -1.00 -34.50 384.88 -10.37 -44.87
By element:
Atomic # 1 Polarization: 4.61 SS G_CDS: -6.97 Total: -2.36 kcal
Atomic # 6 Polarization: 10.32 SS G_CDS: -3.56 Total: 6.75 kcal
Atomic # 7 Polarization: -60.83 SS G_CDS: -0.70 Total: -61.53 kcal
Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.98 kcal
Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal
Total LS contribution 5.80 Total: 5.80 kcal
Total: -34.50 -10.37 -44.87 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001150588173.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 150.596 kcal
(2) G-P(sol) polarization free energy of solvation -34.496 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.100 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.370 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.866 kcal
(6) G-S(sol) free energy of system = (1) + (5) 105.730 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds